Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

200972 .. 204782

Gene Structure 3811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46001

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTTCAGCCACAAAAGCCGACACTGCTGGCTGGAACTGCGACCAGTAGAGGATTGGGTGCTACTCGGAGTATCAATCTGAAGCAAAGACTTCCATCACCAGCTGTGAACAAGATGATGATGATCCCAAAGATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTAAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCAGTGCAGGGGAGTCTGCTGGACTCGATGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCTGGCCAAACCGTCCAAGTCGGCACAAAGGAGATTCTAGTGCATGGTCCTTCTGAAAGAGAAAGCATACTTGAATCTCTTCTTGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTGTCCCTTCTGCAGTAAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCGGAGATAGGGATCAGTTGTATAAGACTGTAGAAGACTCAAAAGTCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCTTGCAGGTTATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGCAACAGCTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCCGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGCGGATATATGATATGAGGGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

350

Amino Acids

38.02

Weight (kDa)

6.45

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	76 - 200	1.6e-18	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	204 - 344	3.7e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	455, 572
Acc36I	ACCTGC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	2 cut(s)	531, 1006
AclWI	GGATC	7 cut(s)	154, 331, 549, 781, 789, 797, 810
AcoI	YGGCCR	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	952
AfiI	CCNNNNNNNGG	4 cut(s)	598, 599, 760, 1036
AgsI	TTSAA	2 cut(s)	410, 993
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	4 cut(s)	140, 487, 662, 817
AluI	AGCT	4 cut(s)	140, 487, 662, 817
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	7 cut(s)	154, 331, 549, 781, 789, 797, 810
AoxI	GGCC	2 cut(s)	267, 340
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	126, 876
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	510
BalI	TGGCCA	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	570
BccI	CCATC	3 cut(s)	139, 511, 817
BciT130I	CCWGG	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	2 cut(s)	374, 818
BfmI	CTRYAG	2 cut(s)	465, 558
BfuAI	ACCTGC	1 cut(s)	673
BlpI	GCTNAGC	1 cut(s)	645
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	309, 804
BmrFI	CCNGG	1 cut(s)	657
BmsI	GCATC	1 cut(s)	949
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	315
BsaBI	GATNNNNATC	3 cut(s)	158, 540, 780
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	833, 863
Bsc4I	CCNNNNNNNGG	4 cut(s)	598, 599, 760, 1036
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	81
Bse8I	GATNNNNATC	3 cut(s)	158, 540, 780
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	1030
BseJI	GATNNNNATC	3 cut(s)	158, 540, 780
BseLI	CCNNNNNNNGG	4 cut(s)	598, 599, 760, 1036
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	1 cut(s)	510
BseYI	CCCAGC	1 cut(s)	807
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	269, 342
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	4 cut(s)	598, 599, 760, 1036
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	269, 342
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
Bsp1720I	GCTNAGC	1 cut(s)	645
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	2 cut(s)	531, 1006
BspANI	GGCC	2 cut(s)	269, 342
BspCNI	CTCAG	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	309, 804
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	7 cut(s)	154, 331, 549, 781, 789, 797, 810
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	6 cut(s)	245, 349, 457, 559, 898, 955
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	4 cut(s)	204, 645, 732, 978
BstDSI	CCRYGG	1 cut(s)	630
BstENI	CCTNNNNNAGG	1 cut(s)	1034
BstF5I	GGATG	1 cut(s)	1030
BstKTI	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 61, 74, 623
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	1048
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	2 cut(s)	465, 558
BstSLI	GKGCMC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	3 cut(s)	323, 786, 802
BstYI	RGATCY	3 cut(s)	323, 786, 802
BsuRI	GGCC	2 cut(s)	269, 342
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	1030
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	59, 283, 453
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	951
CviAII	CATG	6 cut(s)	10, 235, 380, 631, 857, 1045
CviQI	GTAC	1 cut(s)	951
DdeI	CTNAG	4 cut(s)	204, 645, 732, 978
DpnI	GATC	8 cut(s)	161, 325, 543, 783, 788, 804, 891, 934
DpnII	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
DrdI	GACNNNNNNGTC	2 cut(s)	455, 572
DseDI	GACNNNNNNGTC	2 cut(s)	455, 572
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	630
EcoT22I	ATGCAT	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	630
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	6 cut(s)	13, 238, 383, 634, 860, 1048
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	6 cut(s)	9, 234, 379, 630, 856, 1044
FauNDI	CATATG	1 cut(s)	867
FblI	GTMKAC	1 cut(s)	447
FokI	GGATG	1 cut(s)	1037
FspBI	CTAG	2 cut(s)	374, 818
GsaI	CCCAGC	1 cut(s)	811
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	269, 342
HapII	CCGG	1 cut(s)	528
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	13, 238, 383, 634, 860, 1048
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	8 cut(s)	287, 297, 335, 370, 410, 498, 566, 692
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	2 cut(s)	126, 876
Hpy166II	GTNNAC	5 cut(s)	145, 241, 448, 472, 710
Hpy188I	TCNGA	6 cut(s)	105, 117, 391, 503, 786, 879
Hpy188III	TCNNGA	4 cut(s)	332, 723, 754, 836
Hpy8I	GTNNAC	5 cut(s)	145, 241, 448, 472, 710
HpyAV	CCTTC	4 cut(s)	259, 396, 471, 976
HpyCH4III	ACNGT	6 cut(s)	245, 349, 457, 559, 898, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 61, 74, 623
HpyF3I	CTNAG	4 cut(s)	204, 645, 732, 978
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	13, 238, 383, 634, 860, 1048
Kzo9I	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
LmnI	GCTCC	2 cut(s)	659, 841
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	2 cut(s)	374, 818
MaeIII	GTNAC	1 cut(s)	1040
MalI	GATC	8 cut(s)	161, 325, 543, 783, 788, 804, 891, 934
MboI	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
MboII	GAAGA	2 cut(s)	407, 575
MfeI	CAATTG	2 cut(s)	28, 791
MflI	RGATCY	3 cut(s)	323, 786, 802
MhlI	GDGCHC	1 cut(s)	510
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	8 cut(s)	28, 174, 433, 585, 636, 650, 791, 966
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	5 cut(s)	291, 296, 344, 507, 560
MmeI	TCCRAC	2 cut(s)	234, 481
MnlI	CCTC	6 cut(s)	80, 603, 832, 940, 1014, 1030
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	862
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	657
MunI	CAATTG	2 cut(s)	28, 791
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	4 cut(s)	52, 61, 74, 623
NcoI	CCATGG	1 cut(s)	630
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
NlaIII	CATG	6 cut(s)	13, 238, 383, 634, 860, 1048
NlaIV	GGNNCC	2 cut(s)	309, 804
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	1 cut(s)	1048
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	370, 410, 692
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	655
PleI	GAGTC	5 cut(s)	291, 295, 343, 506, 560
PpsI	GAGTC	5 cut(s)	291, 295, 343, 506, 560
Psp6I	CCWGG	1 cut(s)	655
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	309, 804
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	3 cut(s)	323, 786, 802
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	952
RsaNI	GTAC	1 cut(s)	951
SalI	GTCGAC	1 cut(s)	446
Sau3AI	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	5 cut(s)	291, 296, 344, 507, 560
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	1 cut(s)	510
SetI	ASST	7 cut(s)	142, 489, 612, 664, 687, 819, 987
SfaNI	GCATC	1 cut(s)	949
SfcI	CTRYAG	2 cut(s)	465, 558
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
Sse9I	AATT	8 cut(s)	28, 174, 433, 585, 636, 650, 791, 966
SsiI	CCGC	2 cut(s)	531, 1006
SspMI	CTAG	2 cut(s)	374, 818
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	6 cut(s)	245, 349, 457, 559, 898, 955
TaqI	TCGA	2 cut(s)	300, 447
TasI	AATT	8 cut(s)	28, 174, 433, 585, 636, 650, 791, 966
TfiI	GAWTC	3 cut(s)	370, 410, 692
TscAI	CASTG	3 cut(s)	66, 283, 460
TspDTI	ATGAA	2 cut(s)	854, 977
TspRI	CASTG	3 cut(s)	66, 283, 460
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	1034
XceI	RCATGY	1 cut(s)	1048
XcmI	CCANNNNNNNNNTGG	3 cut(s)	88, 439, 637
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	2 cut(s)	374, 818
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.