Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

147860 .. 151391

Gene Structure 3532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCTGAGGCTCCGAGTCGAAACAGAGCAAGAGCCTGGGTTCGTTGCCTCTTCCAAGGTTGTAGAATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTGAAGCCACAAAAGCCGACACTGCTGGCTGGAACTGCGACCAGTAGAGGATTGGGTGCTACTCGGAGTATCAATCTGAAGCAAAGACTTCCATCACCAGCGATGATGATGATCCCAAAGATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTAAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCAGTGCAGCGGAGTCTGCTGGACTCGACGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCTGGCCAAACCGTCCAAGTCGGCACAAAGGAGATTCTAGTGCATGGTCCTTCTGAAAGAGAAAGCATTCTTGAATCTCTTCTTGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTGTCCCTTCTGCAGTTAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCGGAGATAGGGATCAGTTGTATAAGACTGTAGAAGACTCAAAAGTCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCTTGCAGGTTATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGCAACAGCTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCCGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGCAGATATACGATATGAGGGATGTCCTGCGAGAGGGTAACATGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

369

Amino Acids

40.24

Weight (kDa)

7.62

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	95 - 219	3.3e-19	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	223 - 363	3.6e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	512, 629
Acc36I	ACCTGC	1 cut(s)	730
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	3 cut(s)	341, 588, 1105
AclWI	GGATC	7 cut(s)	211, 388, 606, 838, 846, 854, 867
AcoI	YGGCCR	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	1009
AfiI	CCNNNNNNNGG	4 cut(s)	655, 656, 817, 1093
AgsI	TTSAA	2 cut(s)	467, 1050
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	35, 712
AluBI	AGCT	3 cut(s)	544, 719, 874
AluI	AGCT	3 cut(s)	544, 719, 874
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	7 cut(s)	211, 388, 606, 838, 846, 854, 867
AoxI	GGCC	2 cut(s)	324, 397
ApeKI	GCWGC	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	459, 471
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	192, 933
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	567
BalI	TGGCCA	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	205, 568, 874
BciT130I	CCWGG	2 cut(s)	37, 714
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	431, 875
BfmI	CTRYAG	2 cut(s)	522, 615
BfuAI	ACCTGC	1 cut(s)	730
BisI	GCNGC	1 cut(s)	339
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	37, 714
Bme18I	GGWCC	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	3 cut(s)	12, 366, 861
BmrFI	CCNGG	2 cut(s)	37, 714
BmsI	GCATC	1 cut(s)	1006
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	372
BsaBI	GATNNNNATC	3 cut(s)	215, 597, 837
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	36, 55, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	4 cut(s)	655, 656, 817, 1093
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	147
Bse8I	GATNNNNATC	3 cut(s)	215, 597, 837
BseBI	CCWGG	2 cut(s)	37, 714
BseDI	CCNNGG	3 cut(s)	36, 55, 687
BseGI	GGATG	1 cut(s)	1087
BseJI	GATNNNNATC	3 cut(s)	215, 597, 837
BseLI	CCNNNNNNNGG	4 cut(s)	655, 656, 817, 1093
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	911
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	864
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	326, 399
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	4 cut(s)	655, 656, 817, 1093
BsmAI	GTCTC	1 cut(s)	376
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	2 cut(s)	88, 459
BsnI	GGCC	2 cut(s)	326, 399
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
Bsp1720I	GCTNAGC	1 cut(s)	702
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	3 cut(s)	341, 588, 1105
BspANI	GGCC	2 cut(s)	326, 399
BspCNI	CTCAG	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	12, 366, 861
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	730
BspPI	GGATC	7 cut(s)	211, 388, 606, 838, 846, 854, 867
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	3 cut(s)	36, 55, 687
BssMI	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	55, 687
Bst2UI	CCWGG	2 cut(s)	37, 714
Bst4CI	ACNGT	6 cut(s)	302, 406, 514, 616, 955, 1012
Bst6I	CTCTTC	2 cut(s)	56, 477
BstACI	GRCGYC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	5 cut(s)	6, 261, 702, 789, 1035
BstDSI	CCRYGG	1 cut(s)	687
BstENI	CCTNNNNNAGG	1 cut(s)	1091
BstF5I	GGATG	1 cut(s)	1087
BstKTI	GATC	8 cut(s)	219, 383, 601, 841, 846, 862, 949, 992
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 127, 140, 347, 680
BstNI	CCWGG	2 cut(s)	37, 714
BstNSI	RCATGY	1 cut(s)	1105
BstSCI	CCNGG	2 cut(s)	35, 712
BstSFI	CTRYAG	2 cut(s)	522, 615
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	3 cut(s)	380, 843, 859
BstYI	RGATCY	3 cut(s)	380, 843, 859
BsuRI	GGCC	2 cut(s)	326, 399
BtgI	CCRYGG	1 cut(s)	687
BtgZI	GCGATG	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	1087
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	125, 340, 510
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	440
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	1008
CviAII	CATG	6 cut(s)	76, 292, 437, 688, 914, 1102
CviQI	GTAC	1 cut(s)	1008
DdeI	CTNAG	5 cut(s)	6, 261, 702, 789, 1035
DpnI	GATC	8 cut(s)	218, 382, 600, 840, 845, 861, 948, 991
DpnII	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
DrdI	GACNNNNNNGTC	2 cut(s)	512, 629
DseDI	GACNNNNNNGTC	2 cut(s)	512, 629
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	56, 477
EarI	CTCTTC	2 cut(s)	56, 477
EciI	GGCGGA	1 cut(s)	603
Eco130I	CCWWGG	2 cut(s)	55, 687
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	1091
EcoRII	CCWGG	2 cut(s)	35, 712
EcoT14I	CCWWGG	2 cut(s)	55, 687
EcoT22I	ATGCAT	1 cut(s)	919
ErhI	CCWWGG	2 cut(s)	55, 687
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	6 cut(s)	79, 295, 440, 691, 917, 1105
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	75, 291, 436, 687, 913, 1101
FauNDI	CATATG	1 cut(s)	924
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	1094
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	431, 875
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	326, 399
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	6 cut(s)	79, 295, 440, 691, 917, 1105
HincII	GTYRAC	2 cut(s)	505, 529
HindII	GTYRAC	2 cut(s)	505, 529
HinfI	GANTC	9 cut(s)	16, 344, 354, 392, 427, 467, 555, 623, 749
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	2 cut(s)	192, 933
Hpy166II	GTNNAC	4 cut(s)	298, 505, 529, 767
Hpy188I	TCNGA	8 cut(s)	7, 15, 171, 183, 448, 560, 843, 936
Hpy188III	TCNNGA	5 cut(s)	389, 464, 780, 811, 893
Hpy8I	GTNNAC	4 cut(s)	298, 505, 529, 767
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	4 cut(s)	316, 453, 528, 1033
HpyCH4III	ACNGT	6 cut(s)	302, 406, 514, 616, 955, 1012
HpyCH4IV	ACGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 127, 140, 347, 680
HpyF3I	CTNAG	5 cut(s)	6, 261, 702, 789, 1035
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	6 cut(s)	79, 295, 440, 691, 917, 1105
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
LmnI	GCTCC	3 cut(s)	16, 716, 898
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	1006
MaeI	CTAG	2 cut(s)	431, 875
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	1097
MalI	GATC	8 cut(s)	218, 382, 600, 840, 845, 861, 948, 991
MboI	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
MboII	GAAGA	3 cut(s)	43, 464, 632
MfeI	CAATTG	2 cut(s)	94, 848
MflI	RGATCY	3 cut(s)	380, 843, 859
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	8 cut(s)	94, 231, 490, 642, 693, 707, 848, 1023
MluNI	TGGCCA	1 cut(s)	399
MlyI	GAGTC	6 cut(s)	25, 348, 353, 401, 564, 617
MmeI	TCCRAC	2 cut(s)	291, 538
MnlI	CCTC	7 cut(s)	59, 146, 660, 889, 997, 1071, 1087
Mox20I	TGGCCA	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	919
MroXI	GAANNNNTTC	2 cut(s)	459, 471
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	2 cut(s)	37, 714
MunI	CAATTG	2 cut(s)	94, 848
Mva1269I	GAATGC	2 cut(s)	88, 459
MvaI	CCWGG	2 cut(s)	37, 714
MwoI	GCNNNNNNNGC	5 cut(s)	118, 127, 140, 347, 680
NcoI	CCATGG	1 cut(s)	687
NdeI	CATATG	1 cut(s)	924
NdeII	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
NlaIII	CATG	6 cut(s)	79, 295, 440, 691, 917, 1105
NlaIV	GGNNCC	3 cut(s)	12, 366, 861
NsiI	ATGCAT	1 cut(s)	919
NspI	RCATGY	1 cut(s)	1105
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	2 cut(s)	88, 459
PdmI	GAANNNNTTC	2 cut(s)	459, 471
PfeI	GAWTC	3 cut(s)	427, 467, 749
PflMI	CCANNNNNTGG	1 cut(s)	817
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	6 cut(s)	24, 348, 352, 400, 563, 617
PpsI	GAGTC	6 cut(s)	24, 348, 352, 400, 563, 617
Psp6I	CCWGG	2 cut(s)	35, 712
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	2 cut(s)	35, 712
PspN4I	GGNNCC	3 cut(s)	12, 366, 861
PspPI	GGNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	3 cut(s)	380, 843, 859
RsaI	GTAC	1 cut(s)	1009
RsaNI	GTAC	1 cut(s)	1008
SalI	GTCGAC	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	6 cut(s)	25, 348, 353, 401, 564, 617
ScrFI	CCNGG	2 cut(s)	37, 714
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	8 cut(s)	61, 363, 546, 669, 721, 744, 876, 1044
SfaNI	GCATC	1 cut(s)	1006
SfcI	CTRYAG	2 cut(s)	522, 615
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	8 cut(s)	94, 231, 490, 642, 693, 707, 848, 1023
SsiI	CCGC	3 cut(s)	341, 588, 1105
SspMI	CTAG	2 cut(s)	431, 875
StyD4I	CCNGG	2 cut(s)	35, 712
StyI	CCWWGG	2 cut(s)	55, 687
TaaI	ACNGT	6 cut(s)	302, 406, 514, 616, 955, 1012
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	3 cut(s)	19, 357, 504
TasI	AATT	8 cut(s)	94, 231, 490, 642, 693, 707, 848, 1023
TfiI	GAWTC	3 cut(s)	427, 467, 749
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	3 cut(s)	132, 340, 517
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	911, 1034
TspRI	CASTG	3 cut(s)	132, 340, 517
Van91I	CCANNNNNTGG	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	440
XagI	CCTNNNNNAGG	1 cut(s)	1091
XceI	RCATGY	1 cut(s)	1105
XcmI	CCANNNNNNNNNTGG	3 cut(s)	154, 496, 694
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	2 cut(s)	459, 471
XspI	CTAG	2 cut(s)	431, 875
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.