Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

164905 .. 168468

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G000140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCTGACTCTAGACTCACCGATTCAATACATGCATTATACCCAAACAACACAAGGTTGTAGAATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTGAAGCCACAAAAGCCGACACTGCTGGCTGGAACTGCGACCAGTAGAGGATTGGGTGCTACTCGGAGTATCAATCTGAAGCAAAGACTTCCATCACCAGCGATGATGATGATCCCAAAGATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTAAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCAGTGCAGCGGAGTCTGCTGGACTCGATGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCTGGCCAAACCGTCCAAGTCGGCACAAAGGAGATTCTAGTGCATGGTCCTTCTGAAAGAGAAAGCATTCTTGAATCTCTTCTCGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTGTCCCTTCTGCAGTAAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCGGAGATAGGGATCAGTTGTATAAGACTGTAGAAGACTCAAAAGTCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCTTGCAGGTTATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATCTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGCAACAGCTAGAGATGGTTGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCCGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGCGGATATACGATATGAGGGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

368

Amino Acids

40.16

Weight (kDa)

6.51

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	94 - 218	3.3e-19	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	222 - 362	4.1e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	509, 626
Acc36I	ACCTGC	1 cut(s)	727
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	3 cut(s)	338, 585, 1060
AclWI	GGATC	7 cut(s)	208, 385, 603, 835, 843, 851, 864
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	1006
AfiI	CCNNNNNNNGG	4 cut(s)	652, 653, 814, 1090
AgsI	TTSAA	3 cut(s)	26, 464, 1047
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	3 cut(s)	541, 716, 871
AluI	AGCT	3 cut(s)	541, 716, 871
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	7 cut(s)	208, 385, 603, 835, 843, 851, 864
AoxI	GGCC	2 cut(s)	321, 394
ApeKI	GCWGC	1 cut(s)	335
Asp700I	GAANNNNTTC	2 cut(s)	456, 468
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	9, 189, 930
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	856
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	3 cut(s)	202, 565, 871
BciT130I	CCWGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	3 cut(s)	11, 428, 872
BfmI	CTRYAG	2 cut(s)	519, 612
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	363, 858
BmrFI	CCNGG	1 cut(s)	711
BmsI	GCATC	1 cut(s)	1003
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu1102I	GCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	369
BsaBI	GATNNNNATC	3 cut(s)	212, 594, 834
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	684
BsaXI	ACNNNNNCTCC	2 cut(s)	887, 917
Bsc4I	CCNNNNNNNGG	4 cut(s)	652, 653, 814, 1090
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	144
Bse8I	GATNNNNATC	3 cut(s)	212, 594, 834
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	1 cut(s)	1084
BseJI	GATNNNNATC	3 cut(s)	212, 594, 834
BseLI	CCNNNNNNNGG	4 cut(s)	652, 653, 814, 1090
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	908
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	861
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	323, 396
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	4 cut(s)	652, 653, 814, 1090
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	497
BsmI	GAATGC	2 cut(s)	85, 456
BsnI	GGCC	2 cut(s)	323, 396
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
Bsp1720I	GCTNAGC	1 cut(s)	699
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	3 cut(s)	338, 585, 1060
BspANI	GGCC	2 cut(s)	323, 396
BspCNI	CTCAG	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	363, 858
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	7 cut(s)	208, 385, 603, 835, 843, 851, 864
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	6 cut(s)	299, 403, 511, 613, 952, 1009
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	258, 699, 786, 1032
BstDSI	CCRYGG	1 cut(s)	684
BstENI	CCTNNNNNAGG	1 cut(s)	1088
BstF5I	GGATG	1 cut(s)	1084
BstKTI	GATC	8 cut(s)	216, 380, 598, 838, 843, 859, 946, 989
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 124, 137, 344, 677
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	34, 1102
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	2 cut(s)	519, 612
BstSLI	GKGCMC	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	3 cut(s)	377, 840, 856
BstYI	RGATCY	3 cut(s)	377, 840, 856
BsuRI	GGCC	2 cut(s)	323, 396
BtgI	CCRYGG	1 cut(s)	684
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	1084
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	122, 337, 507
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	437
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	1005
CviAII	CATG	7 cut(s)	31, 73, 289, 434, 685, 911, 1099
CviQI	GTAC	1 cut(s)	1005
DdeI	CTNAG	4 cut(s)	258, 699, 786, 1032
DpnI	GATC	8 cut(s)	215, 379, 597, 837, 842, 858, 945, 988
DpnII	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
DrdI	GACNNNNNNGTC	2 cut(s)	509, 626
DseDI	GACNNNNNNGTC	2 cut(s)	509, 626
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	1088
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	684
EcoT22I	ATGCAT	2 cut(s)	36, 916
ErhI	CCWWGG	1 cut(s)	684
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	7 cut(s)	34, 76, 292, 437, 688, 914, 1102
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	7 cut(s)	30, 72, 288, 433, 684, 910, 1098
FauNDI	CATATG	1 cut(s)	921
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	1091
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	3 cut(s)	11, 428, 872
GluI	GCNGC	1 cut(s)	336
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	2 cut(s)	323, 396
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	7 cut(s)	34, 76, 292, 437, 688, 914, 1102
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	3 cut(s)	9, 189, 930
Hpy166II	GTNNAC	4 cut(s)	295, 502, 526, 764
Hpy188I	TCNGA	6 cut(s)	168, 180, 445, 557, 840, 933
Hpy188III	TCNNGA	6 cut(s)	11, 386, 461, 777, 808, 890
Hpy8I	GTNNAC	4 cut(s)	295, 502, 526, 764
HpyAV	CCTTC	4 cut(s)	313, 450, 525, 1030
HpyCH4III	ACNGT	6 cut(s)	299, 403, 511, 613, 952, 1009
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 124, 137, 344, 677
HpyF3I	CTNAG	4 cut(s)	258, 699, 786, 1032
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	7 cut(s)	34, 76, 292, 437, 688, 914, 1102
Kzo9I	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
LmnI	GCTCC	2 cut(s)	713, 895
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	1 cut(s)	1003
MaeI	CTAG	3 cut(s)	11, 428, 872
MaeIII	GTNAC	1 cut(s)	1094
MalI	GATC	8 cut(s)	215, 379, 597, 837, 842, 858, 945, 988
MboI	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
MboII	GAAGA	2 cut(s)	461, 629
MfeI	CAATTG	2 cut(s)	91, 845
MflI	RGATCY	3 cut(s)	377, 840, 856
MhlI	GDGCHC	1 cut(s)	564
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	8 cut(s)	91, 228, 487, 639, 690, 704, 845, 1020
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	6 cut(s)	8, 345, 350, 398, 561, 614
MmeI	TCCRAC	3 cut(s)	288, 535, 862
MnlI	CCTC	6 cut(s)	143, 657, 886, 994, 1068, 1084
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	2 cut(s)	36, 916
MroXI	GAANNNNTTC	2 cut(s)	456, 468
MscI	TGGCCA	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	711
MunI	CAATTG	2 cut(s)	91, 845
Mva1269I	GAATGC	2 cut(s)	85, 456
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	5 cut(s)	115, 124, 137, 344, 677
NcoI	CCATGG	1 cut(s)	684
NdeI	CATATG	1 cut(s)	921
NdeII	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
NlaIII	CATG	7 cut(s)	34, 76, 292, 437, 688, 914, 1102
NlaIV	GGNNCC	2 cut(s)	363, 858
NsiI	ATGCAT	2 cut(s)	36, 916
NspI	RCATGY	2 cut(s)	34, 1102
PctI	GAATGC	2 cut(s)	85, 456
PdmI	GAANNNNTTC	2 cut(s)	456, 468
PfeI	GAWTC	4 cut(s)	22, 424, 464, 746
PflMI	CCANNNNNTGG	1 cut(s)	814
PfoI	TCCNGGA	1 cut(s)	709
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	6 cut(s)	8, 345, 349, 397, 560, 614
PpsI	GAGTC	6 cut(s)	8, 345, 349, 397, 560, 614
Psp6I	CCWGG	1 cut(s)	709
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	2 cut(s)	363, 858
PspPI	GGNCC	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	3 cut(s)	377, 840, 856
RsaI	GTAC	1 cut(s)	1006
RsaNI	GTAC	1 cut(s)	1005
SalI	GTCGAC	1 cut(s)	500
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	6 cut(s)	8, 345, 350, 398, 561, 614
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	1 cut(s)	564
SetI	ASST	7 cut(s)	58, 543, 666, 718, 741, 873, 1041
SfaNI	GCATC	1 cut(s)	1003
SfcI	CTRYAG	2 cut(s)	519, 612
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	8 cut(s)	91, 228, 487, 639, 690, 704, 845, 1020
SsiI	CCGC	3 cut(s)	338, 585, 1060
SspMI	CTAG	3 cut(s)	11, 428, 872
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	6 cut(s)	299, 403, 511, 613, 952, 1009
TaqI	TCGA	2 cut(s)	354, 501
TasI	AATT	8 cut(s)	91, 228, 487, 639, 690, 704, 845, 1020
TfiI	GAWTC	4 cut(s)	22, 424, 464, 746
TscAI	CASTG	3 cut(s)	129, 337, 514
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	908, 1031
TspRI	CASTG	3 cut(s)	129, 337, 514
Van91I	CCANNNNNTGG	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	1088
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	2 cut(s)	34, 1102
XcmI	CCANNNNNNNNNTGG	3 cut(s)	151, 493, 691
XmiI	GTMKAC	1 cut(s)	501
XmnI	GAANNNNTTC	2 cut(s)	456, 468
XspI	CTAG	3 cut(s)	11, 428, 872
Zsp2I	ATGCAT	2 cut(s)	36, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.