Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

696378 .. 697003

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAAAGACCCATTGGAGGAAGCTCTGGCCGGTGGCCGTGGAATAGAGGACTTACGGCGAAGTCCATGGTGAATGCCCCAGCCAGCTGTATCTCTGTTCAGCCTCACAAGCTAACACTGTTTCCTGCAACCAGAGGATTCGGTAGTGTCCATCTCAAGCAGAGAGCTGTCAAGAAGACGATGATGACGATGACCCCCAAGATGTCGATCTCAGCCGTACCCGTTGAGAACCCTGCTACCTCCAACACCAACAAGTTTGACGTTCCTGCAGGTACCCTGATGGTTCTTGTAATTTGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

101

Amino Acids

10.83

Weight (kDa)

10.46

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	260
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AcoI	YGGCCR	2 cut(s)	28, 35
AfaI	GTAC	2 cut(s)	219, 274
AfiI	CCNNNNNNNGG	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	24, 87, 112, 167
AluI	AGCT	4 cut(s)	24, 87, 112, 167
AoxI	GGCC	2 cut(s)	28, 35
Asp718I	GGTACC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	182
BccI	CCATC	2 cut(s)	159, 274
BceAI	ACGGC	3 cut(s)	22, 72, 200
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	38, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse118I	RCCGGY	1 cut(s)	30
Bse8I	GATNNNNATC	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	38, 66
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	30, 37
BshNI	GGYRCC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	30, 37
Bsp143I	GATC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	66
BspANI	GGCC	2 cut(s)	30, 37
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	274
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	38, 66
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	2 cut(s)	38, 66
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	30, 37
BtgI	CCRYGG	2 cut(s)	38, 66
BtsIMutI	CAGTG	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	218, 273
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	24, 30, 37, 83, 87, 103, 112, 167, 215
CviKI_1	RGCY	9 cut(s)	24, 30, 37, 83, 87, 103, 112, 167, 215
CviQI	GTAC	2 cut(s)	218, 273
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	2 cut(s)	28, 35
Eco130I	CCWWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	70
FaiI	YATR	1 cut(s)	68
FatI	CATG	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	30, 37
HapII	CCGG	1 cut(s)	31
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	128, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	187
MluCI	AATT	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	11, 41, 114, 128, 250
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	87
RsaI	GTAC	2 cut(s)	219, 274
RsaNI	GTAC	2 cut(s)	218, 273
Sau3AI	GATC	1 cut(s)	207
SbfI	CCTGCAGG	1 cut(s)	271
SdaI	CCTGCAGG	1 cut(s)	271
SetI	ASST	7 cut(s)	26, 89, 114, 169, 242, 264, 274
SfcI	CTRYAG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse8387I	CCTGCAGG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	138
TscAI	CASTG	1 cut(s)	123
TspRI	CASTG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.