Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Reverse (-)

92570442 .. 92573738

Gene Structure 3297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00156110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTTCAGTCACAAAAGCCGACACTGCTGCCTGGAACTGCGACCAGTAGAGGATTGGGTGCTACTCGGAGTGTCAATCTGAAGCAAAGACTTCCATCACCAGCTGTGAAGAAGAAGAAGATGATGATCCCAAACATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTGAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCGGTGCAGCAGAGTCTGCTGGACTCGATGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCCGGCCAAACCGTCCAAGTCGGCACAAAGGAGATTCTAGTGCATGGTCCTTCTGAAAGAGAAAGCATACTTGAATCTCTTCTTGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTGTCCCTTCTGCAGTAAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCGGAGATAGGGATCGGTTGTATAAGACTGTAGAAGACTCAAAAGTCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCTTGCAGGTGATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGCAACAGTTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCCGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGCGGATATACGATATGAGGGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

351

Amino Acids

38.15

Weight (kDa)

7.66

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	77 - 201	2.2e-18	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	205 - 345	3.7e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	676
AasI	GACNNNNNNGTC	2 cut(s)	458, 575
Acc36I	ACCTGC	1 cut(s)	676
AccB7I	CCANNNNNTGG	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	2 cut(s)	534, 1009
AclWI	GGATC	7 cut(s)	157, 334, 552, 784, 792, 800, 813
AcoI	YGGCCR	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	955
AfiI	CCNNNNNNNGG	4 cut(s)	601, 602, 763, 1039
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	413, 996
AjnI	CCWGG	2 cut(s)	67, 658
AluBI	AGCT	3 cut(s)	140, 490, 665
AluI	AGCT	3 cut(s)	140, 490, 665
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	7 cut(s)	157, 334, 552, 784, 792, 800, 813
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	270, 343
ApeKI	GCWGC	2 cut(s)	64, 284
Asp700I	GAANNNNTTC	1 cut(s)	417
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	126, 253, 700, 879
AvaII	GGWCC	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	51, 296
BccI	CCATC	4 cut(s)	139, 514, 685, 820
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	69, 660
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	468, 561
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	2 cut(s)	65, 285
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	2 cut(s)	66, 286
Bme1390I	CCNGG	2 cut(s)	69, 660
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	312, 807
BmrFI	CCNGG	2 cut(s)	69, 660
BmsI	GCATC	1 cut(s)	952
BpiI	GAAGAC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	735
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	318
BsaBI	GATNNNNATC	3 cut(s)	161, 543, 783
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	836, 866
Bsc4I	CCNNNNNNNGG	4 cut(s)	601, 602, 763, 1039
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	81
Bse8I	GATNNNNATC	3 cut(s)	161, 543, 783
BseBI	CCWGG	2 cut(s)	69, 660
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	1 cut(s)	1033
BseJI	GATNNNNATC	3 cut(s)	161, 543, 783
BseLI	CCNNNNNNNGG	4 cut(s)	601, 602, 763, 1039
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	51, 296
BseYI	CCCAGC	1 cut(s)	810
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	272, 345
BsiSI	CCGG	2 cut(s)	342, 531
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	4 cut(s)	601, 602, 763, 1039
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	272, 345
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
Bsp1720I	GCTNAGC	1 cut(s)	648
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	2 cut(s)	534, 1009
BspANI	GGCC	2 cut(s)	272, 345
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	312, 807
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	7 cut(s)	157, 334, 552, 784, 792, 800, 813
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	633
Bst2UI	CCWGG	2 cut(s)	69, 660
Bst4CI	ACNGT	7 cut(s)	248, 352, 460, 562, 819, 901, 958
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	293, 626
BstDEI	CTNAG	4 cut(s)	207, 648, 735, 981
BstDSI	CCRYGG	1 cut(s)	633
BstENI	CCTNNNNNAGG	1 cut(s)	1037
BstF5I	GGATG	1 cut(s)	1033
BstKTI	GATC	8 cut(s)	165, 329, 547, 787, 792, 808, 895, 938
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 293, 626
BstNI	CCWGG	2 cut(s)	69, 660
BstNSI	RCATGY	2 cut(s)	175, 1051
BstSCI	CCNGG	2 cut(s)	67, 658
BstSFI	CTRYAG	2 cut(s)	468, 561
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	51, 296
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	3 cut(s)	326, 789, 805
BstYI	RGATCY	3 cut(s)	326, 789, 805
BsuRI	GGCC	2 cut(s)	272, 345
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	1033
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	59, 456
BveI	ACCTGC	1 cut(s)	676
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	954
CviAII	CATG	7 cut(s)	10, 172, 238, 383, 634, 860, 1048
CviJI	RGCY	9 cut(s)	55, 140, 185, 272, 345, 490, 647, 665, 740
CviKI_1	RGCY	9 cut(s)	55, 140, 185, 272, 345, 490, 647, 665, 740
CviQI	GTAC	1 cut(s)	954
DdeI	CTNAG	4 cut(s)	207, 648, 735, 981
DpnI	GATC	8 cut(s)	164, 328, 546, 786, 791, 807, 894, 937
DpnII	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
DrdI	GACNNNNNNGTC	2 cut(s)	458, 575
DseDI	GACNNNNNNGTC	2 cut(s)	458, 575
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	549
Eco130I	CCWWGG	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	1037
EcoRII	CCWGG	2 cut(s)	67, 658
EcoT14I	CCWWGG	1 cut(s)	633
EcoT22I	ATGCAT	1 cut(s)	865
ErhI	CCWWGG	1 cut(s)	633
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	7 cut(s)	13, 175, 241, 386, 637, 863, 1051
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	7 cut(s)	9, 171, 237, 382, 633, 859, 1047
FauNDI	CATATG	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	65, 285
FokI	GGATG	1 cut(s)	1040
Fsp4HI	GCNGC	2 cut(s)	65, 285
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	65, 285
GsaI	CCCAGC	1 cut(s)	814
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	272, 345
HapII	CCGG	2 cut(s)	342, 531
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	13, 175, 241, 386, 637, 863, 1051
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	8 cut(s)	290, 300, 338, 373, 413, 501, 569, 695
HpaII	CCGG	2 cut(s)	342, 531
HphI	GGTGA	4 cut(s)	126, 253, 700, 879
Hpy166II	GTNNAC	4 cut(s)	244, 451, 475, 713
Hpy188I	TCNGA	6 cut(s)	105, 117, 394, 506, 789, 882
Hpy188III	TCNNGA	4 cut(s)	335, 726, 757, 839
Hpy8I	GTNNAC	4 cut(s)	244, 451, 475, 713
HpyAV	CCTTC	4 cut(s)	262, 399, 474, 979
HpyCH4III	ACNGT	7 cut(s)	248, 352, 460, 562, 819, 901, 958
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 293, 626
HpyF3I	CTNAG	4 cut(s)	207, 648, 735, 981
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	13, 175, 241, 386, 637, 863, 1051
Kzo9I	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
LmnI	GCTCC	2 cut(s)	662, 844
Lsp1109I	GCAGC	2 cut(s)	51, 296
LweI	GCATC	1 cut(s)	952
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	45, 1043
MalI	GATC	8 cut(s)	164, 328, 546, 786, 791, 807, 894, 937
MboI	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
MboII	GAAGA	6 cut(s)	157, 160, 163, 166, 410, 578
MfeI	CAATTG	2 cut(s)	28, 794
MflI	RGATCY	3 cut(s)	326, 789, 805
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	8 cut(s)	28, 177, 436, 588, 639, 653, 794, 969
MlyI	GAGTC	5 cut(s)	294, 299, 347, 510, 563
MmeI	TCCRAC	2 cut(s)	237, 484
MnlI	CCTC	6 cut(s)	80, 606, 835, 943, 1017, 1033
Mph1103I	ATGCAT	1 cut(s)	865
MroXI	GAANNNNTTC	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	2 cut(s)	342, 531
MspR9I	CCNGG	2 cut(s)	69, 660
MunI	CAATTG	2 cut(s)	28, 794
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	69, 660
MwoI	GCNNNNNNNGC	3 cut(s)	61, 293, 626
NcoI	CCATGG	1 cut(s)	633
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
NlaIII	CATG	7 cut(s)	13, 175, 241, 386, 637, 863, 1051
NlaIV	GGNNCC	2 cut(s)	312, 807
NmuCI	GTSAC	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	865
NspI	RCATGY	2 cut(s)	175, 1051
PaqCI	CACCTGC	1 cut(s)	676
PciI	ACATGT	1 cut(s)	171
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	373, 413, 695
PflMI	CCANNNNNTGG	1 cut(s)	763
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	2 cut(s)	66, 286
PleI	GAGTC	5 cut(s)	294, 298, 346, 509, 563
PpsI	GAGTC	5 cut(s)	294, 298, 346, 509, 563
PscI	ACATGT	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	67, 658
PspFI	CCCAGC	1 cut(s)	810
PspGI	CCWGG	2 cut(s)	67, 658
PspN4I	GGNNCC	2 cut(s)	312, 807
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	3 cut(s)	326, 789, 805
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	955
RsaNI	GTAC	1 cut(s)	954
SalI	GTCGAC	1 cut(s)	449
SatI	GCNGC	2 cut(s)	65, 285
Sau3AI	GATC	8 cut(s)	162, 326, 544, 784, 789, 805, 892, 935
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	5 cut(s)	294, 299, 347, 510, 563
ScrFI	CCNGG	2 cut(s)	69, 660
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	6 cut(s)	142, 492, 615, 667, 690, 990
SfaNI	GCATC	1 cut(s)	952
SfcI	CTRYAG	2 cut(s)	468, 561
SinI	GGWCC	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	8 cut(s)	28, 177, 436, 588, 639, 653, 794, 969
SsiI	CCGC	2 cut(s)	534, 1009
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	67, 658
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	7 cut(s)	248, 352, 460, 562, 819, 901, 958
TaqI	TCGA	2 cut(s)	303, 450
TasI	AATT	8 cut(s)	28, 177, 436, 588, 639, 653, 794, 969
TfiI	GAWTC	3 cut(s)	373, 413, 695
TscAI	CASTG	2 cut(s)	66, 463
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	64, 284
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	857, 980
TspRI	CASTG	2 cut(s)	66, 463
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	386
XagI	CCTNNNNNAGG	1 cut(s)	1037
XceI	RCATGY	2 cut(s)	175, 1051
XcmI	CCANNNNNNNNNTGG	3 cut(s)	88, 442, 640
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.