Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

10538226 .. 10541205

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1142500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCGACCATGCTCAAACTTCCGGCCGCCAATTGTGCGATTCTTCCTCCTCAGCAACAGAAGCGGGCGTTCTTGGCTGGAGCTGCAACCACCAGATTGGATGCGGCTACCGTCTTCACTGCTCGGAGGCAAACACTTTCATTGTCGTCGTCGTCAGCTGCAGCAACTGCAAAGGTGATGTCAGTTTCAGCCGTAGCCGGCCAAAGCATTGAGCTTGAGCAGTCTCCCTCCAAGAACAAGATTGACATTCCTATCATGGTAAACGGATGTAGTGGCAAAATGGGGAAGGCCATCATCCAAGCAGCAAATTCTGCAGGACTCACCGTGGTTCCAGTTTCTTTTGGCTCCGCTGAAGAATCTGGCCAAACCGTCCAAGTTGGTGCAAACGAGATTCTAGTGCATGGTCCTCATGAAAGAGAAAGCACCCTTGCATCCCTTTTCCAGAAATATCCCAATTTGATTGTTATCGACTTCACCGTTCCTTCTGCGGTCAATGATAATGCAGAGCTATATTGCAAAGTTGGAGTGCCCTTTGTGATGGGAACAACAGGCGGGGACAGGGATCAATTGTATAAGACTGTAGAAGACTCAAAAGTCTATGCAGTGATTTCTCCACAGATGGGGAAACAGGTTGTGGCATTTCTTGCAGCCATGGATATCATGGCTGAGCAATTTCCTGGAGCCTTCTCTGGGTATTCTCTACAGGTGATGGAATCCCATCAAGCAAGTAAAGTTGATGCATCTGGAACCGCCAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGGGTGTCCTTTGATATGGAACAGATCCAATTGATCCGGGATCCCCAGCAACAACTGGAGCTGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCACGCATTTCATATGTATCATCTGACCTCACCTGATAAAACAGTTTCTTTCGAGTTTCAGCATAATGTTTGTGGTAGATCAATTTATGCAGAGGGTACAATCGATGCTGTTATTTTCCTTGCCAACAAGATTCATTCAAAGGCAGACAAGCGGATCTACAATATGATGGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

358

Amino Acids

38.38

Weight (kDa)

6.31

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	83 - 207	2e-20	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	211 - 351	5.6e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
AccB7I	CCANNNNNTGG	1 cut(s)	781
AciI	CCGC	8 cut(s)	27, 64, 104, 348, 488, 552, 750, 1027
AclWI	GGATC	6 cut(s)	570, 802, 811, 818, 831, 1037
AcoI	YGGCCR	3 cut(s)	24, 199, 361
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	973
AfiI	CCNNNNNNNGG	4 cut(s)	620, 690, 781, 1057
AgsI	TTSAA	1 cut(s)	1014
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	5 cut(s)	83, 158, 214, 508, 844
AluI	AGCT	5 cut(s)	83, 158, 214, 508, 844
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	6 cut(s)	570, 802, 811, 818, 831, 1037
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	4 cut(s)	24, 199, 288, 361
ApeKI	GCWGC	5 cut(s)	83, 158, 161, 302, 647
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	1 cut(s)	404
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	5 cut(s)	187, 313, 466, 718, 897
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	823
BbsI	GAAGAC	2 cut(s)	106, 591
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	5 cut(s)	70, 145, 173, 314, 659
BccI	CCATC	6 cut(s)	299, 532, 613, 703, 726, 1036
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	678
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	4 cut(s)	159, 312, 579, 701
BisI	GCNGC	7 cut(s)	27, 84, 105, 159, 162, 303, 648
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	7 cut(s)	28, 85, 106, 160, 163, 304, 649
Bme1390I	CCNGG	2 cut(s)	678, 821
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	5 cut(s)	330, 346, 682, 748, 825
BmrFI	CCNGG	2 cut(s)	678, 821
BmsI	GCATC	5 cut(s)	91, 440, 727, 749, 970
BpiI	GAAGAC	2 cut(s)	106, 591
BpmI	CTGGAG	3 cut(s)	99, 699, 860
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	821
Bsa29I	ATCGAT	1 cut(s)	978
BsaBI	GATNNNNATC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	324, 651, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	854, 884
Bsc4I	CCNNNNNNNGG	4 cut(s)	620, 690, 781, 1057
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	332, 843
Bse8I	GATNNNNATC	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	678
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	3 cut(s)	324, 651, 753
BseGI	GGATG	5 cut(s)	106, 272, 294, 431, 1051
BseJI	GATNNNNATC	1 cut(s)	464
BseLI	CCNNNNNNNGG	4 cut(s)	620, 690, 781, 1057
BseMII	CTCAG	2 cut(s)	65, 657
BseNI	ACTGG	2 cut(s)	332, 843
BseRI	GAGGAG	2 cut(s)	39, 875
BseSI	GKGCMC	1 cut(s)	531
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	5 cut(s)	70, 145, 173, 314, 659
BseYI	CCCAGC	1 cut(s)	828
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	4 cut(s)	26, 201, 290, 363
BshVI	ATCGAT	1 cut(s)	978
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	23, 198, 820
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	4 cut(s)	620, 690, 781, 1057
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	4 cut(s)	26, 201, 290, 363
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
Bsp1720I	GCTNAGC	1 cut(s)	666
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	8 cut(s)	27, 64, 104, 348, 488, 552, 750, 1027
BspANI	GGCC	4 cut(s)	26, 201, 290, 363
BspCNI	CTCAG	2 cut(s)	64, 658
BspDI	ATCGAT	1 cut(s)	978
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	5 cut(s)	330, 346, 682, 748, 825
BspMAI	CTGCAG	2 cut(s)	163, 316
BspPI	GGATC	6 cut(s)	570, 802, 811, 818, 831, 1037
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	332, 843
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	324, 651, 753
BssMI	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
BssT1I	CCWWGG	2 cut(s)	651, 753
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	6 cut(s)	112, 325, 370, 478, 580, 919
BstAPI	GCANNNNNTGC	3 cut(s)	167, 311, 644
BstC8I	GCNNGC	2 cut(s)	66, 199
BstDEI	CTNAG	2 cut(s)	51, 666
BstDSI	CCRYGG	2 cut(s)	324, 651
BstENI	CCTNNNNNAGG	1 cut(s)	1055
BstF5I	GGATG	5 cut(s)	106, 272, 294, 431, 1051
BstKTI	GATC	6 cut(s)	565, 810, 819, 826, 956, 1032
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 61, 74, 83, 167, 311, 644
BstNI	CCWGG	1 cut(s)	678
BstNSI	RCATGY	1 cut(s)	1069
BstSCI	CCNGG	2 cut(s)	676, 819
BstSFI	CTRYAG	4 cut(s)	159, 312, 579, 701
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	5 cut(s)	70, 145, 173, 314, 659
BstV2I	GAAGAC	2 cut(s)	106, 591
BstX2I	RGATCY	3 cut(s)	807, 823, 1029
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	3 cut(s)	807, 823, 1029
BstZI	CGGCCG	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	978
BsuRI	GGCC	4 cut(s)	26, 201, 290, 363
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	2 cut(s)	324, 651
BtsCI	GGATG	5 cut(s)	106, 272, 294, 431, 1051
BtsI	GCAGTG	2 cut(s)	117, 609
BtsIMutI	CAGTG	2 cut(s)	117, 609
Cac8I	GCNNGC	2 cut(s)	66, 199
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	404
ClaI	ATCGAT	1 cut(s)	978
Csp6I	GTAC	1 cut(s)	972
CviAII	CATG	7 cut(s)	10, 256, 401, 410, 652, 661, 1066
CviQI	GTAC	1 cut(s)	972
DdeI	CTNAG	2 cut(s)	51, 666
DpnI	GATC	6 cut(s)	564, 809, 818, 825, 955, 1031
DpnII	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
EaeI	YGGCCR	3 cut(s)	24, 199, 361
EagI	CGGCCG	1 cut(s)	24
EclXI	CGGCCG	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	651, 753
Eco32I	GATATC	1 cut(s)	658
Eco47I	GGWCC	1 cut(s)	404
Eco52I	CGGCCG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	658
EcoT14I	CCWWGG	2 cut(s)	651, 753
EcoT22I	ATGCAT	1 cut(s)	742
ErhI	CCWWGG	2 cut(s)	651, 753
FaeI	CATG	7 cut(s)	13, 259, 404, 413, 655, 664, 1069
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	7 cut(s)	9, 255, 400, 409, 651, 660, 1065
FauI	CCCGC	2 cut(s)	57, 545
FauNDI	CATATG	1 cut(s)	888
Fnu4HI	GCNGC	7 cut(s)	27, 84, 105, 159, 162, 303, 648
FokI	GGATG	5 cut(s)	113, 279, 281, 418, 1058
Fsp4HI	GCNGC	7 cut(s)	27, 84, 105, 159, 162, 303, 648
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	7 cut(s)	27, 84, 105, 159, 162, 303, 648
GsaI	CCCAGC	1 cut(s)	832
GsuI	CTGGAG	3 cut(s)	99, 699, 860
HaeIII	GGCC	4 cut(s)	26, 201, 290, 363
HapII	CCGG	3 cut(s)	23, 198, 820
Hin1II	CATG	7 cut(s)	13, 259, 404, 413, 655, 664, 1069
HinfI	GANTC	7 cut(s)	40, 318, 356, 391, 587, 713, 1006
HpaII	CCGG	3 cut(s)	23, 198, 820
HphI	GGTGA	5 cut(s)	187, 313, 466, 718, 897
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	126, 900
Hpy188III	TCNNGA	5 cut(s)	410, 442, 744, 775, 857
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	2 cut(s)	151, 154
HpyAV	CCTTC	3 cut(s)	280, 492, 694
HpyCH4III	ACNGT	6 cut(s)	112, 325, 370, 478, 580, 919
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 61, 74, 83, 167, 311, 644
HpyF3I	CTNAG	2 cut(s)	51, 666
Hsp92II	CATG	7 cut(s)	13, 259, 404, 413, 655, 664, 1069
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
LmnI	GCTCC	5 cut(s)	80, 350, 680, 841, 862
Lsp1109I	GCAGC	5 cut(s)	70, 145, 173, 314, 659
LweI	GCATC	5 cut(s)	91, 440, 727, 749, 970
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	875, 1061
MalI	GATC	6 cut(s)	564, 809, 818, 825, 955, 1031
MboI	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
MboII	GAAGA	4 cut(s)	35, 106, 365, 596
MfeI	CAATTG	3 cut(s)	31, 566, 812
MflI	RGATCY	3 cut(s)	807, 823, 1029
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	7 cut(s)	31, 307, 454, 566, 671, 812, 957
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	2 cut(s)	312, 581
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	9 cut(s)	57, 60, 120, 238, 417, 853, 913, 961, 1051
Mox20I	TGGCCA	1 cut(s)	363
Mph1103I	ATGCAT	1 cut(s)	742
MroNI	GCCGGC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	158, 350
MspI	CCGG	3 cut(s)	23, 198, 820
MspR9I	CCNGG	2 cut(s)	678, 821
MunI	CAATTG	3 cut(s)	31, 566, 812
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	7 cut(s)	35, 61, 74, 83, 167, 311, 644
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	651
NdeI	CATATG	1 cut(s)	888
NdeII	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	7 cut(s)	13, 259, 404, 413, 655, 664, 1069
NlaIV	GGNNCC	5 cut(s)	330, 346, 682, 748, 825
NmuCI	GTSAC	1 cut(s)	875
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	1069
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	5 cut(s)	40, 356, 391, 713, 1006
PflMI	CCANNNNNTGG	1 cut(s)	781
PfoI	TCCNGGA	2 cut(s)	676, 819
PkrI	GCNGC	7 cut(s)	28, 85, 106, 160, 163, 304, 649
PleI	GAGTC	2 cut(s)	312, 581
PpsI	GAGTC	2 cut(s)	312, 581
Psp6I	CCWGG	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	828
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	5 cut(s)	330, 346, 682, 748, 825
PspPI	GGNCC	1 cut(s)	404
PstI	CTGCAG	2 cut(s)	163, 316
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	3 cut(s)	807, 823, 1029
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	973
RsaNI	GTAC	1 cut(s)	972
SatI	GCNGC	7 cut(s)	27, 84, 105, 159, 162, 303, 648
Sau3AI	GATC	6 cut(s)	562, 807, 816, 823, 953, 1029
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	2 cut(s)	312, 581
ScrFI	CCNGG	2 cut(s)	678, 821
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	5 cut(s)	91, 440, 727, 749, 970
SfcI	CTRYAG	4 cut(s)	159, 312, 579, 701
SinI	GGWCC	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	31, 307, 454, 566, 671, 812, 957
SsiI	CCGC	8 cut(s)	27, 64, 104, 348, 488, 552, 750, 1027
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	676, 819
StyI	CCWWGG	2 cut(s)	651, 753
TaaI	ACNGT	6 cut(s)	112, 325, 370, 478, 580, 919
TaqI	TCGA	3 cut(s)	468, 927, 978
TasI	AATT	7 cut(s)	31, 307, 454, 566, 671, 812, 957
TauI	GCSGC	2 cut(s)	29, 107
TfiI	GAWTC	5 cut(s)	40, 356, 391, 713, 1006
TscAI	CASTG	2 cut(s)	124, 609
TseFI	GTSAC	1 cut(s)	875
TseI	GCWGC	5 cut(s)	83, 158, 161, 302, 647
Tsp45I	GTSAC	1 cut(s)	875
TspDTI	ATGAA	4 cut(s)	129, 426, 875, 998
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	124, 609
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	1 cut(s)	404
XagI	CCTNNNNNAGG	1 cut(s)	1055
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XspI	CTAG	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.