Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Reverse (-)

391077 .. 394750

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00280.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCCAAGTCCATGGTGAATGCCCCAGCCAGCTGTATCTCTGTTCAGCCTCACAAGCCAACACTGTTGCCTGCAACCAGAGGATTCGGTAGTGTCCATCTGAAGCAGAGAGCTGTCAAGAAGATGACGATGACGATGACCCCCAAGATGTCGATCTCAGCCGTACCCGTTGAGAACACTGCTACCTCCAACACCAACATGTTTGACATTCCTATCATGGTAAACGGTTGTAGTGGTAAGATGGGGAAGGTCATTATCAGCGCAGCAGAGTCTGCTGGACTCAATGTGGTTCCTGTCTCCTTTGGATCTGCTCAAGAGGCTGGCCAAACCGTCCAAGTCGGCACAAAGGAGGTTCTAGTCCATGGTCCTTCGGATAGAGAATCCACACTTGAGTCTCTTCTTGTTAAATATCCCGATTTGATTGTGGTTGACTTCACTGTCCCTTCTGCAGTAAATGATAATGCAGAGCTATATTGCAGAGTTGGAGTGCCCTTTGTGATGGGAACAACCGGTGGAGATAGGGATCTCTTGTATAAGACTGTACAAGACTCTAAAGTCTATGCAGTGATTTCCCCTCAAATGGGGAAACAGGTTGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCCTGCAGGTGATGGAATCACATCAAGCAAGTAAACTTGACACATCTGGAACCGCCAAGGCTGTTATTTCCTGCTTCCAGAAGCTGGGAGTGTCCTTTGATATGGATCAGGTCCAATTGATAAGGGATCCCCAGCAACAGGTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTACCATCTCACTTCACCTGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTTATTTAAAGGCAGACAAACGGATTTACGATATGAGGGATGTACTGCGAGAGGGTTTATTTAAAGGCAGACAAACGGATTTACGATATGAGGGATGTACTGCGAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

360

Amino Acids

39.05

Weight (kDa)

6.75

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	70 - 194	6.3e-19	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	198 - 338	4.6e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
AasI	GACNNNNNNGTC	2 cut(s)	437, 554
Acc36I	ACCTGC	1 cut(s)	655
AccB7I	CCANNNNNTGG	1 cut(s)	742
AciI	CCGC	1 cut(s)	711
AclWI	GGATC	5 cut(s)	313, 531, 771, 779, 792
AcoI	YGGCCR	2 cut(s)	3, 322
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	6 cut(s)	165, 543, 854, 934, 1011, 1066
AfiI	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 796
AflIII	ACRYGT	1 cut(s)	198
AgeI	ACCGGT	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	5 cut(s)	33, 113, 469, 644, 742
AluI	AGCT	5 cut(s)	33, 113, 469, 644, 742
Alw26I	GTCTC	2 cut(s)	301, 399
AlwI	GGATC	5 cut(s)	313, 531, 771, 779, 792
AlwNI	CAGNNNCTG	2 cut(s)	272, 742
AoxI	GGCC	2 cut(s)	3, 322
ApeKI	GCWGC	1 cut(s)	263
AsiGI	ACCGGT	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	365, 769
AsuHPI	GGTGA	3 cut(s)	28, 679, 858
AvaII	GGWCC	2 cut(s)	365, 769
BaeGI	GKGCMC	1 cut(s)	492
BalI	TGGCCA	2 cut(s)	5, 324
BamHI	GGATCC	1 cut(s)	784
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	6 cut(s)	105, 235, 493, 664, 799, 864
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	2 cut(s)	301, 399
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	2 cut(s)	447, 662
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	2 cut(s)	365, 769
BmgT120I	GGNCC	2 cut(s)	365, 769
BmiI	GGNNCC	3 cut(s)	291, 709, 786
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	931
BpmI	CTGGAG	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	297, 410
BsaBI	GATNNNNATC	3 cut(s)	152, 522, 762
BsaJI	CCNNGG	4 cut(s)	12, 361, 612, 714
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bsc4I	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 796
Bse118I	RCCGGY	1 cut(s)	509
Bse8I	GATNNNNATC	3 cut(s)	152, 522, 762
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	4 cut(s)	12, 361, 612, 714
BseGI	GGATG	2 cut(s)	1012, 1067
BseJI	GATNNNNATC	3 cut(s)	152, 522, 762
BseLI	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 796
BseMII	CTCAG	2 cut(s)	171, 618
BseRI	GAGGAG	1 cut(s)	836
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	3 cut(s)	25, 742, 789
BshFI	GGCC	2 cut(s)	5, 324
BshTI	ACCGGT	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 796
BsmAI	GTCTC	2 cut(s)	301, 399
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	5, 324
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	3 cut(s)	12, 361, 612
BspACI	CCGC	1 cut(s)	711
BspANI	GGCC	2 cut(s)	5, 324
BspCNI	CTCAG	2 cut(s)	170, 619
BspLI	GGNNCC	3 cut(s)	291, 709, 786
BspMAI	CTGCAG	2 cut(s)	451, 666
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	5 cut(s)	313, 531, 771, 779, 792
BsrFI	RCCGGY	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	12, 361, 612, 714
BssMI	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
BssT1I	CCWWGG	4 cut(s)	12, 361, 612, 714
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	7 cut(s)	66, 227, 331, 439, 541, 880, 937
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	2 cut(s)	272, 605
BstAUI	TGTACA	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	31, 72, 322
BstDEI	CTNAG	3 cut(s)	157, 627, 960
BstDSI	CCRYGG	3 cut(s)	12, 361, 612
BstF5I	GGATG	2 cut(s)	1012, 1067
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	7 cut(s)	156, 308, 526, 766, 787, 874, 917
BstMAI	GTCTC	2 cut(s)	301, 399
BstMBI	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 272, 317, 605
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	2 cut(s)	447, 662
BstSLI	GKGCMC	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	3 cut(s)	305, 523, 784
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	3 cut(s)	305, 523, 784
BsuRI	GGCC	2 cut(s)	5, 324
BtgI	CCRYGG	3 cut(s)	12, 361, 612
BtsCI	GGATG	2 cut(s)	1012, 1067
BtsI	GCAGTG	2 cut(s)	177, 570
BtsIMutI	CAGTG	4 cut(s)	62, 177, 435, 570
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	3 cut(s)	31, 72, 322
CaiI	CAGNNNCTG	2 cut(s)	272, 742
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	365, 769
Csp6I	GTAC	6 cut(s)	164, 542, 853, 933, 1010, 1065
CspAI	ACCGGT	1 cut(s)	509
CviAII	CATG	6 cut(s)	13, 199, 217, 362, 613, 839
CviQI	GTAC	6 cut(s)	164, 542, 853, 933, 1010, 1065
DdeI	CTNAG	3 cut(s)	157, 627, 960
DpnI	GATC	7 cut(s)	155, 307, 525, 765, 786, 873, 916
DpnII	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
DraI	TTTAAA	2 cut(s)	975, 1030
DrdI	GACNNNNNNGTC	2 cut(s)	437, 554
DseDI	GACNNNNNNGTC	2 cut(s)	437, 554
EaeI	YGGCCR	2 cut(s)	3, 322
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	4 cut(s)	12, 361, 612, 714
Eco47I	GGWCC	2 cut(s)	365, 769
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	637
EcoT14I	CCWWGG	4 cut(s)	12, 361, 612, 714
EcoT22I	ATGCAT	1 cut(s)	844
ErhI	CCWWGG	4 cut(s)	12, 361, 612, 714
FaeI	CATG	6 cut(s)	16, 202, 220, 365, 616, 842
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	6 cut(s)	12, 198, 216, 361, 612, 838
FauNDI	CATATG	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	2 cut(s)	1019, 1074
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	264
GsaI	CCCAGC	3 cut(s)	29, 746, 793
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	2 cut(s)	5, 324
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	6 cut(s)	16, 202, 220, 365, 616, 842
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	7 cut(s)	84, 269, 279, 380, 392, 548, 674
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	3 cut(s)	28, 679, 858
Hpy166II	GTNNAC	3 cut(s)	223, 430, 692
Hpy188I	TCNGA	2 cut(s)	102, 373
Hpy188III	TCNNGA	6 cut(s)	118, 314, 413, 705, 736, 818
Hpy8I	GTNNAC	3 cut(s)	223, 430, 692
HpyAV	CCTTC	4 cut(s)	241, 378, 453, 958
HpyCH4III	ACNGT	7 cut(s)	66, 227, 331, 439, 541, 880, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 272, 317, 605
HpyF3I	CTNAG	3 cut(s)	157, 627, 960
Hsp92II	CATG	6 cut(s)	16, 202, 220, 365, 616, 842
HspAI	GCGC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
LmnI	GCTCC	2 cut(s)	641, 823
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	1 cut(s)	356
MalI	GATC	7 cut(s)	155, 307, 525, 765, 786, 873, 916
MboI	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
MboII	GAAGA	2 cut(s)	133, 389
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	3 cut(s)	305, 523, 784
MhlI	GDGCHC	1 cut(s)	492
MlsI	TGGCCA	2 cut(s)	5, 324
MluCI	AATT	4 cut(s)	618, 632, 773, 948
MluNI	TGGCCA	2 cut(s)	5, 324
MlyI	GAGTC	4 cut(s)	273, 278, 401, 542
MmeI	TCCRAC	2 cut(s)	213, 463
Mox20I	TGGCCA	2 cut(s)	5, 324
Mph1103I	ATGCAT	1 cut(s)	844
MscI	TGGCCA	2 cut(s)	5, 324
MseI	TTAA	3 cut(s)	405, 974, 1029
MslI	CAYNNNNRTG	1 cut(s)	197
Msp20I	TGGCCA	2 cut(s)	5, 324
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	1 cut(s)	773
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	4 cut(s)	55, 272, 317, 605
NcoI	CCATGG	3 cut(s)	12, 361, 612
NdeI	CATATG	1 cut(s)	849
NdeII	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
NlaIII	CATG	6 cut(s)	16, 202, 220, 365, 616, 842
NlaIV	GGNNCC	3 cut(s)	291, 709, 786
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	1 cut(s)	202
PaqCI	CACCTGC	1 cut(s)	655
PciI	ACATGT	1 cut(s)	198
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	84, 380, 674
PflMI	CCANNNNNTGG	1 cut(s)	742
PfoI	TCCNGGA	1 cut(s)	637
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	4 cut(s)	273, 277, 400, 542
PpsI	GAGTC	4 cut(s)	273, 277, 400, 542
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	637
PspFI	CCCAGC	3 cut(s)	25, 742, 789
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	3 cut(s)	291, 709, 786
PspPI	GGNCC	2 cut(s)	365, 769
PstI	CTGCAG	2 cut(s)	451, 666
PstNI	CAGNNNCTG	2 cut(s)	272, 742
PsuI	RGATCY	3 cut(s)	305, 523, 784
PvuII	CAGCTG	1 cut(s)	33
RsaI	GTAC	6 cut(s)	165, 543, 854, 934, 1011, 1066
RsaNI	GTAC	6 cut(s)	164, 542, 853, 933, 1010, 1065
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	405, 974, 1029
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	7 cut(s)	153, 305, 523, 763, 784, 871, 914
Sau96I	GGNCC	2 cut(s)	365, 769
SbfI	CCTGCAGG	1 cut(s)	666
SchI	GAGTC	4 cut(s)	273, 278, 401, 542
ScrFI	CCNGG	1 cut(s)	639
SdaI	CCTGCAGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	931
SfcI	CTRYAG	2 cut(s)	447, 662
SinI	GGWCC	2 cut(s)	365, 769
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	312, 389
SmoI	CTYRAG	2 cut(s)	312, 389
Sse8387I	CCTGCAGG	1 cut(s)	666
Sse9I	AATT	4 cut(s)	618, 632, 773, 948
SsiI	CCGC	1 cut(s)	711
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	4 cut(s)	12, 361, 612, 714
TaaI	ACNGT	7 cut(s)	66, 227, 331, 439, 541, 880, 937
TaqI	TCGA	1 cut(s)	152
TasI	AATT	4 cut(s)	618, 632, 773, 948
TatI	WGTACW	3 cut(s)	541, 1009, 1064
TfiI	GAWTC	3 cut(s)	84, 380, 674
Tru1I	TTAA	3 cut(s)	405, 974, 1029
Tru9I	TTAA	3 cut(s)	405, 974, 1029
TscAI	CASTG	4 cut(s)	69, 184, 442, 570
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	836
TspGWI	ACGGA	2 cut(s)	1003, 1058
TspRI	CASTG	4 cut(s)	69, 184, 442, 570
Van91I	CCANNNNNTGG	1 cut(s)	742
VpaK11BI	GGWCC	2 cut(s)	365, 769
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.