Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Reverse (-)

13260544 .. 13264217

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G152500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGTCCATGCTCAAACTGCCAGCCAATTGTGTCGTTTTTCAGCAACAGAGGCGGGCAGTCTTAGCTAGAGCTGGAACCAGTAGATTAGATGCTACTGGTTTCAATTGGAAGCAAAGAGCTTCATCATCATCATCATCGGCTATGAATATGATCCCAAAGATGTCAATTTCAGCCATACCCAATCAAAGTCTTGAGAAGTCTTTGCCCAAGAACAAGATTGACATCCCTATCATGGTAAACTCATGTAGTGGCAAAATGGGGAAGGCCATTATACAAGCAGCAGATTCTGCAGGACTGAGTGTGGTTCCCGCATCATTTGGCTCTGCCGAGGAATCGGGGCAAACCGTCCAAGTCGGCGCAAACGAGATTCTGATCCATGGTCCTTCTGAAAGAGAAAGAACCCTTGCATCTCTTCTCGAGAAATATCCCAATTTGATTGTGGTGGACTTCACTGTGCCTTCGGCAGTAAATGATAATGCAGAACTATATTGCAAAGTTGGAGTGCCATTTGTGATGGGAACAACCGGTGGAGACAGGGATCGGTTGTACAAGACTGTAGAAGACTCACTAGTCTATGCAGTAATTTCCCCACAAATGGGAAAACAGGTTGTGGCATTTCTTGCAGCCGTGGAAATTATGGCCGAGCAATTCCCTGGAGCTTTCTCTGGGTATTCCCTACAGGTTATGGAATCCCATCAAGCAAGTAAAGTTGACACATCTGGAACTGCAAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGTGTGTCCTTTGATATGGAGCAGGTCCAATTGGTCCGGGATCCCCAGCAACAATTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGAGTTCACCTGATGAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGCACAATTGATTCTGTAATTTTCCTTGCTAAGAAGGTCCATTCGAAGGCAGAGAAGCGGTTATACAATATGATAGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

351

Amino Acids

38.07

Weight (kDa)

6.46

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	760
AciI	CCGC	3 cut(s)	55, 312, 1006
AclWI	GGATC	5 cut(s)	148, 370, 549, 797, 810
AcoI	YGGCCR	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	6 cut(s)	235, 598, 599, 760, 994, 1036
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	1 cut(s)	106
AhlI	ACTAGT	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	4 cut(s)	68, 74, 122, 662
AluI	AGCT	4 cut(s)	68, 74, 122, 662
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	5 cut(s)	148, 370, 549, 797, 810
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	267, 642
ApeKI	GCWGC	2 cut(s)	281, 626
AsiGI	ACCGGT	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	4 cut(s)	383, 787, 796, 985
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	876
AsuII	TTCGAA	1 cut(s)	992
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	4 cut(s)	383, 787, 796, 985
BaeGI	GKGCMC	1 cut(s)	953
BamHI	GGATCC	1 cut(s)	802
BarI	GAAGNNNNNNTAC	2 cut(s)	995, 1027
BbsI	GAAGAC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	293, 638
BccI	CCATC	3 cut(s)	511, 705, 817
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	800
BcoDI	GTCTC	1 cut(s)	528
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	2 cut(s)	69, 572
BfmI	CTRYAG	3 cut(s)	291, 558, 680
BfuAI	ACCTGC	1 cut(s)	775
BisI	GCNGC	2 cut(s)	282, 627
BlsI	GCNGC	2 cut(s)	283, 628
Bme1390I	CCNGG	2 cut(s)	657, 800
Bme18I	GGWCC	4 cut(s)	383, 787, 796, 985
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	4 cut(s)	383, 787, 796, 985
BmiI	GGNNCC	3 cut(s)	79, 309, 804
BmrFI	CCNGG	2 cut(s)	657, 800
BmsI	GCATC	3 cut(s)	82, 323, 419
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	992
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	800
BsaBI	GATNNNNATC	2 cut(s)	224, 374
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	330, 379, 630, 655
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	833, 863
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 598, 599, 760, 994, 1036
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	81, 103
Bse8I	GATNNNNATC	2 cut(s)	224, 374
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	4 cut(s)	330, 379, 630, 655
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	2 cut(s)	224, 374
BseLI	CCNNNNNNNGG	6 cut(s)	235, 598, 599, 760, 994, 1036
BseMII	CTCAG	2 cut(s)	290, 869
BseNI	ACTGG	2 cut(s)	81, 103
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	1 cut(s)	953
BseXI	GCAGC	2 cut(s)	293, 638
BseYI	CCCAGC	1 cut(s)	807
BshFI	GGCC	2 cut(s)	269, 644
BshTI	ACCGGT	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	2 cut(s)	528, 799
BslI	CCNNNNNNNGG	6 cut(s)	235, 598, 599, 760, 994, 1036
BsmAI	GTCTC	1 cut(s)	528
BsnI	GGCC	2 cut(s)	269, 644
BsoBI	CYCGRG	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	992
Bsp1286I	GDGCHC	1 cut(s)	953
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	5 cut(s)	153, 375, 541, 802, 932
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	3 cut(s)	55, 312, 1006
BspANI	GGCC	2 cut(s)	269, 644
BspCNI	CTCAG	2 cut(s)	291, 870
BspLI	GGNNCC	3 cut(s)	79, 309, 804
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	5 cut(s)	148, 370, 549, 797, 810
BspT104I	TTCGAA	1 cut(s)	992
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	81, 103
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	330, 379, 630, 655
BssMI	GATC	5 cut(s)	153, 375, 541, 802, 932
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	4 cut(s)	349, 457, 559, 898
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	290, 623
BstAUI	TGTACA	1 cut(s)	549
BstBI	TTCGAA	1 cut(s)	992
BstC8I	GCNNGC	2 cut(s)	24, 57
BstDEI	CTNAG	4 cut(s)	64, 299, 878, 978
BstDSI	CCRYGG	2 cut(s)	379, 630
BstENI	CCTNNNNNAGG	1 cut(s)	1034
BstF5I	GGATG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	5 cut(s)	156, 378, 544, 805, 935
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	5 cut(s)	153, 375, 541, 802, 932
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 52, 65, 290, 623
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	1048
BstSCI	CCNGG	2 cut(s)	655, 798
BstSFI	CTRYAG	3 cut(s)	291, 558, 680
BstSLI	GKGCMC	1 cut(s)	953
BstV1I	GCAGC	2 cut(s)	293, 638
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuRI	GGCC	2 cut(s)	269, 644
BtgI	CCRYGG	2 cut(s)	379, 630
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	2 cut(s)	24, 57
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	4 cut(s)	383, 787, 796, 985
Csp6I	GTAC	1 cut(s)	550
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	6 cut(s)	10, 235, 246, 380, 857, 1045
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	4 cut(s)	64, 299, 878, 978
DpnI	GATC	5 cut(s)	155, 377, 543, 804, 934
DpnII	GATC	5 cut(s)	153, 375, 541, 802, 932
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	4 cut(s)	383, 787, 796, 985
Eco88I	CYCGRG	1 cut(s)	419
EcoNI	CCTNNNNNAGG	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	6 cut(s)	13, 238, 249, 383, 860, 1048
FatI	CATG	6 cut(s)	9, 234, 245, 379, 856, 1044
FauI	CCCGC	2 cut(s)	48, 319
FauNDI	CATATG	1 cut(s)	867
Fnu4HI	GCNGC	2 cut(s)	282, 627
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	282, 627
FspBI	CTAG	2 cut(s)	69, 572
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	282, 627
GsaI	CCCAGC	1 cut(s)	811
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	269, 644
HapII	CCGG	2 cut(s)	528, 799
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	13, 238, 249, 383, 860, 1048
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	6 cut(s)	287, 335, 370, 566, 692, 959
HpaII	CCGG	2 cut(s)	528, 799
HphI	GGTGA	1 cut(s)	876
Hpy166II	GTNNAC	4 cut(s)	241, 448, 715, 884
Hpy188I	TCNGA	3 cut(s)	375, 391, 879
Hpy188III	TCNNGA	6 cut(s)	194, 419, 421, 723, 754, 836
Hpy8I	GTNNAC	4 cut(s)	241, 448, 715, 884
HpyAV	CCTTC	5 cut(s)	259, 396, 471, 976, 988
HpyCH4III	ACNGT	4 cut(s)	349, 457, 559, 898
HpyCH4V	TGCA	9 cut(s)	293, 410, 482, 495, 581, 626, 731, 860, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 52, 65, 290, 623
HpyF3I	CTNAG	4 cut(s)	64, 299, 878, 978
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	13, 238, 249, 383, 860, 1048
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	153, 375, 541, 802, 932
LmnI	GCTCC	3 cut(s)	659, 781, 841
Lsp1109I	GCAGC	2 cut(s)	293, 638
LweI	GCATC	3 cut(s)	82, 323, 419
MaeI	CTAG	2 cut(s)	69, 572
MaeIII	GTNAC	1 cut(s)	1040
MalI	GATC	5 cut(s)	155, 377, 543, 804, 934
MboI	GATC	5 cut(s)	153, 375, 541, 802, 932
MboII	GAAGA	2 cut(s)	407, 575
MfeI	CAATTG	4 cut(s)	28, 106, 791, 954
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	953
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	5 cut(s)	45, 325, 832, 940, 1030
Mph1103I	ATGCAT	1 cut(s)	862
MspI	CCGG	2 cut(s)	528, 799
MspR9I	CCNGG	2 cut(s)	657, 800
MunI	CAATTG	4 cut(s)	28, 106, 791, 954
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	5 cut(s)	19, 52, 65, 290, 623
NciI	CCSGG	1 cut(s)	800
NcoI	CCATGG	1 cut(s)	379
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	5 cut(s)	153, 375, 541, 802, 932
NlaIII	CATG	6 cut(s)	13, 238, 249, 383, 860, 1048
NlaIV	GGNNCC	3 cut(s)	79, 309, 804
NmeAIII	GCCGAG	2 cut(s)	355, 670
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	1 cut(s)	1048
NspV	TTCGAA	1 cut(s)	992
PaeR7I	CTCGAG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	5 cut(s)	287, 335, 370, 692, 959
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	798
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	283, 628
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	655
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	3 cut(s)	79, 309, 804
PspPI	GGNCC	4 cut(s)	383, 787, 796, 985
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SatI	GCNGC	2 cut(s)	282, 627
Sau3AI	GATC	5 cut(s)	153, 375, 541, 802, 932
Sau96I	GGNCC	4 cut(s)	383, 787, 796, 985
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	657, 800
SduI	GDGCHC	1 cut(s)	953
SetI	ASST	9 cut(s)	70, 76, 124, 612, 664, 687, 789, 889, 987
SfaNI	GCATC	3 cut(s)	82, 323, 419
SfcI	CTRYAG	3 cut(s)	291, 558, 680
Sfr274I	CTCGAG	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	992
SinI	GGWCC	4 cut(s)	383, 787, 796, 985
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	2 cut(s)	194, 419
SmoI	CTYRAG	2 cut(s)	194, 419
SpeI	ACTAGT	1 cut(s)	571
SsiI	CCGC	3 cut(s)	55, 312, 1006
SspMI	CTAG	2 cut(s)	69, 572
StyD4I	CCNGG	2 cut(s)	655, 798
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	349, 457, 559, 898
TaqI	TCGA	2 cut(s)	420, 992
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	5 cut(s)	287, 335, 370, 692, 959
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	2 cut(s)	281, 626
TspDTI	ATGAA	4 cut(s)	114, 161, 854, 906
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	4 cut(s)	383, 787, 796, 985
XagI	CCTNNNNNAGG	1 cut(s)	1034
XceI	RCATGY	1 cut(s)	1048
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	2 cut(s)	69, 572
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.