Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

198025 .. 201604

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCTGAGGCTCCAAGTCGAAACAGAGCGAGAGCCTTCCAAGGTTGTAGAATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTTCAGCCACAAAAGCCGACACTGCTGGCTGGAACTGCGACCAGTAGAGGATTGGGTGCTACTCGGAGTATCAATCTGAAGCAAAGACTTCCATCACCAGCTGTGAACAAGATGATGATGATCCCAAAGATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTAAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCAGTGCAGGGGAGTCTGCTGGACTCGATGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCTGGCCAAACCGTCCAAGTCGGCACAAAGGAGATTCTAGTGCATGGTCCTTCTGAAAGAGAAAGCATACTTGAATCTCTTCTTGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTGTCCCTTCTGCAGTAAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCGGAGATAGGGATCAGTTGTATAAGACTGTAGAAGACTCAAAAGTCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCTTGCAGGTTATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGCAACAGCTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCCGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGCGGATATATGATATGAGGGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

367

Amino Acids

39.93

Weight (kDa)

7.64

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	93 - 217	1.7e-18	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	221 - 361	4.1e-15	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	506, 623
Acc36I	ACCTGC	1 cut(s)	724
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccI	GTMKAC	1 cut(s)	498
AciI	CCGC	2 cut(s)	582, 1057
AclWI	GGATC	7 cut(s)	205, 382, 600, 832, 840, 848, 861
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	1003
AfiI	CCNNNNNNNGG	4 cut(s)	649, 650, 811, 1087
AgsI	TTSAA	2 cut(s)	461, 1044
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	4 cut(s)	191, 538, 713, 868
AluI	AGCT	4 cut(s)	191, 538, 713, 868
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	7 cut(s)	205, 382, 600, 832, 840, 848, 861
AoxI	GGCC	2 cut(s)	318, 391
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	177, 927
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	621
BccI	CCATC	3 cut(s)	190, 562, 868
BciT130I	CCWGG	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	425, 869
BfmI	CTRYAG	2 cut(s)	516, 609
BfuAI	ACCTGC	1 cut(s)	724
BlpI	GCTNAGC	1 cut(s)	696
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	3 cut(s)	12, 360, 855
BmrFI	CCNGG	1 cut(s)	708
BmsI	GCATC	1 cut(s)	1000
BpiI	GAAGAC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	729
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	366
BsaBI	GATNNNNATC	3 cut(s)	209, 591, 831
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	40, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	649, 650, 811, 1087
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	1 cut(s)	132
Bse8I	GATNNNNATC	3 cut(s)	209, 591, 831
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	40, 681
BseGI	GGATG	1 cut(s)	1081
BseJI	GATNNNNATC	3 cut(s)	209, 591, 831
BseLI	CCNNNNNNNGG	4 cut(s)	649, 650, 811, 1087
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	905
BseSI	GKGCMC	1 cut(s)	561
BseYI	CCCAGC	1 cut(s)	858
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	320, 393
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	4 cut(s)	649, 650, 811, 1087
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	320, 393
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
Bsp1720I	GCTNAGC	1 cut(s)	696
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	2 cut(s)	582, 1057
BspANI	GGCC	2 cut(s)	320, 393
BspCNI	CTCAG	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	12, 360, 855
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	7 cut(s)	205, 382, 600, 832, 840, 848, 861
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	2 cut(s)	40, 681
BssMI	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	40, 681
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	6 cut(s)	296, 400, 508, 610, 949, 1006
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	5 cut(s)	6, 255, 696, 783, 1029
BstDSI	CCRYGG	1 cut(s)	681
BstENI	CCTNNNNNAGG	1 cut(s)	1085
BstF5I	GGATG	1 cut(s)	1081
BstKTI	GATC	8 cut(s)	213, 377, 595, 835, 840, 856, 943, 986
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 112, 125, 674
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	1 cut(s)	1099
BstSCI	CCNGG	1 cut(s)	706
BstSFI	CTRYAG	2 cut(s)	516, 609
BstSLI	GKGCMC	1 cut(s)	561
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	3 cut(s)	374, 837, 853
BstYI	RGATCY	3 cut(s)	374, 837, 853
BsuRI	GGCC	2 cut(s)	320, 393
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	1081
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	3 cut(s)	110, 334, 504
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	1002
CviAII	CATG	6 cut(s)	61, 286, 431, 682, 908, 1096
CviQI	GTAC	1 cut(s)	1002
DdeI	CTNAG	5 cut(s)	6, 255, 696, 783, 1029
DpnI	GATC	8 cut(s)	212, 376, 594, 834, 839, 855, 942, 985
DpnII	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
DrdI	GACNNNNNNGTC	2 cut(s)	506, 623
DseDI	GACNNNNNNGTC	2 cut(s)	506, 623
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	2 cut(s)	40, 681
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	1085
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	40, 681
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	2 cut(s)	40, 681
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	6 cut(s)	64, 289, 434, 685, 911, 1099
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	6 cut(s)	60, 285, 430, 681, 907, 1095
FauNDI	CATATG	1 cut(s)	918
FblI	GTMKAC	1 cut(s)	498
FokI	GGATG	1 cut(s)	1088
FspBI	CTAG	2 cut(s)	425, 869
GsaI	CCCAGC	1 cut(s)	862
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	320, 393
HapII	CCGG	1 cut(s)	579
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	6 cut(s)	64, 289, 434, 685, 911, 1099
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	8 cut(s)	338, 348, 386, 421, 461, 549, 617, 743
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	2 cut(s)	177, 927
Hpy166II	GTNNAC	5 cut(s)	196, 292, 499, 523, 761
Hpy188I	TCNGA	7 cut(s)	7, 156, 168, 442, 554, 837, 930
Hpy188III	TCNNGA	4 cut(s)	383, 774, 805, 887
Hpy8I	GTNNAC	5 cut(s)	196, 292, 499, 523, 761
HpyAV	CCTTC	5 cut(s)	46, 310, 447, 522, 1027
HpyCH4III	ACNGT	6 cut(s)	296, 400, 508, 610, 949, 1006
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 112, 125, 674
HpyF3I	CTNAG	5 cut(s)	6, 255, 696, 783, 1029
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	6 cut(s)	64, 289, 434, 685, 911, 1099
Kzo9I	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
LmnI	GCTCC	3 cut(s)	16, 710, 892
LweI	GCATC	1 cut(s)	1000
MaeI	CTAG	2 cut(s)	425, 869
MaeIII	GTNAC	1 cut(s)	1091
MalI	GATC	8 cut(s)	212, 376, 594, 834, 839, 855, 942, 985
MboI	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
MboII	GAAGA	2 cut(s)	458, 626
MfeI	CAATTG	2 cut(s)	79, 842
MflI	RGATCY	3 cut(s)	374, 837, 853
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	8 cut(s)	79, 225, 484, 636, 687, 701, 842, 1017
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	5 cut(s)	342, 347, 395, 558, 611
MmeI	TCCRAC	2 cut(s)	285, 532
MnlI	CCTC	6 cut(s)	131, 654, 883, 991, 1065, 1081
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	708
MunI	CAATTG	2 cut(s)	79, 842
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	4 cut(s)	103, 112, 125, 674
NcoI	CCATGG	1 cut(s)	681
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
NlaIII	CATG	6 cut(s)	64, 289, 434, 685, 911, 1099
NlaIV	GGNNCC	3 cut(s)	12, 360, 855
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	1099
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	421, 461, 743
PflMI	CCANNNNNTGG	1 cut(s)	811
PfoI	TCCNGGA	1 cut(s)	706
PleI	GAGTC	5 cut(s)	342, 346, 394, 557, 611
PpsI	GAGTC	5 cut(s)	342, 346, 394, 557, 611
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	858
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	3 cut(s)	12, 360, 855
PspPI	GGNCC	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	3 cut(s)	374, 837, 853
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	1003
RsaNI	GTAC	1 cut(s)	1002
SalI	GTCGAC	1 cut(s)	497
Sau3AI	GATC	8 cut(s)	210, 374, 592, 832, 837, 853, 940, 983
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	5 cut(s)	342, 347, 395, 558, 611
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	8 cut(s)	46, 193, 540, 663, 715, 738, 870, 1038
SfaNI	GCATC	1 cut(s)	1000
SfcI	CTRYAG	2 cut(s)	516, 609
SinI	GGWCC	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	8 cut(s)	79, 225, 484, 636, 687, 701, 842, 1017
SsiI	CCGC	2 cut(s)	582, 1057
SspMI	CTAG	2 cut(s)	425, 869
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	2 cut(s)	40, 681
TaaI	ACNGT	6 cut(s)	296, 400, 508, 610, 949, 1006
TaqI	TCGA	3 cut(s)	19, 351, 498
TasI	AATT	8 cut(s)	79, 225, 484, 636, 687, 701, 842, 1017
TfiI	GAWTC	3 cut(s)	421, 461, 743
TscAI	CASTG	3 cut(s)	117, 334, 511
TspDTI	ATGAA	2 cut(s)	905, 1028
TspRI	CASTG	3 cut(s)	117, 334, 511
Van91I	CCANNNNNTGG	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	1085
XceI	RCATGY	1 cut(s)	1099
XcmI	CCANNNNNNNNNTGG	3 cut(s)	139, 490, 688
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	2 cut(s)	425, 869
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.