Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025868.1

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Reverse (-)

5988 .. 8936

Gene Structure 2949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025868.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgctgaatgccccacccaattgtatctctgttcagccacaaaagccgacactgctggctggaactgcgaccagtagaggattgggtgctactcggagtatcaatctgaagcaaagacttccatcaccagcgatgatgatgatcccaaagatgtcaatttcagccctaccccttgacaaccctactaagtccaacaacaagtttgacattcctatcatggtaaacggttgtaatggtaaaatggggaaggccattatcagtgcagcggagtctgctggactcgatgtggttcccgtctcctttggatctgctcaagagtctggccaaaccgtccaagtcggcacaaaggagattctagtgcatggtccttctgaaagagaaagcatacttgaatctcttcttgtcaaatatcccaatttgattgtggtcgacttcactgtcccttctgcagttaacgataatgcagagctatattgcagggtcggagtgccctttgtgatgggaacaaccggcggagatagggatcagttgtataagactgtagaagactcaaaagtctatgcagtaatttcccctcaaatggggaaacaggtcgttgcatttcttgcaaccatggaaattatggctgagcaatttcctggagctttctctgggtattccttgcaggttatggaatctcatcaagcaagtaaacttgacacatctggaactgctaaggctgttatctcttgcttccagaagttgggagtgtcttttgatatggatcagatccaattgataagggatccccagcaacagctagagatggtgggagttccagaggagcatttgtctggtcatgcatttcatatgtatcatctgacttcacccgatcaaacagtttcttttgagtttcagcataatgtttgtggtagatcaatatatgcagagggtacagttgatgctgtaattttccttgctaagaaggttcattcaaaggcagacaagcggatatacgatatgagggatgtcctgcgagagggtaacatgcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

344

Amino Acids

37.4

Weight (kDa)

6.25

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	437, 554
Acc36I	ACCTGC	1 cut(s)	655
AccB7I	CCANNNNNTGG	1 cut(s)	742
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	3 cut(s)	266, 513, 988
AclWI	GGATC	7 cut(s)	136, 313, 531, 763, 771, 779, 792
AcoI	YGGCCR	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 1018
AgsI	TTSAA	2 cut(s)	392, 975
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	3 cut(s)	469, 644, 799
AluI	AGCT	3 cut(s)	469, 644, 799
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	7 cut(s)	136, 313, 531, 763, 771, 779, 792
AoxI	GGCC	2 cut(s)	249, 322
ApeKI	GCWGC	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	117, 858
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	3 cut(s)	130, 493, 799
BciT130I	CCWGG	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	356, 800
BfmI	CTRYAG	2 cut(s)	447, 540
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	291, 786
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	931
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	297
BsaBI	GATNNNNATC	3 cut(s)	140, 522, 762
BsaJI	CCNNGG	1 cut(s)	612
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bsc4I	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 1018
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	72
Bse8I	GATNNNNATC	3 cut(s)	140, 522, 762
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	1 cut(s)	1012
BseJI	GATNNNNATC	3 cut(s)	140, 522, 762
BseLI	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 1018
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	836
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	789
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	251, 324
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	580, 581, 742, 1018
BsmAI	GTCTC	1 cut(s)	301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	251, 324
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	3 cut(s)	266, 513, 988
BspANI	GGCC	2 cut(s)	251, 324
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	291, 786
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	7 cut(s)	136, 313, 531, 763, 771, 779, 792
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	6 cut(s)	227, 331, 439, 541, 880, 937
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	186, 627, 714, 960
BstDSI	CCRYGG	1 cut(s)	612
BstENI	CCTNNNNNAGG	1 cut(s)	1016
BstF5I	GGATG	1 cut(s)	1012
BstKTI	GATC	8 cut(s)	144, 308, 526, 766, 771, 787, 874, 917
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 52, 65, 272, 605
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	1 cut(s)	1030
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	2 cut(s)	447, 540
BstSLI	GKGCMC	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	3 cut(s)	305, 768, 784
BstYI	RGATCY	3 cut(s)	305, 768, 784
BsuRI	GGCC	2 cut(s)	251, 324
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	1012
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	3 cut(s)	50, 265, 435
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	933
CviAII	CATG	5 cut(s)	217, 362, 613, 839, 1027
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	4 cut(s)	186, 627, 714, 960
DpnI	GATC	8 cut(s)	143, 307, 525, 765, 770, 786, 873, 916
DpnII	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
DrdI	GACNNNNNNGTC	2 cut(s)	437, 554
DseDI	GACNNNNNNGTC	2 cut(s)	437, 554
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	1016
EcoRII	CCWGG	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	612
EcoT22I	ATGCAT	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	5 cut(s)	220, 365, 616, 842, 1030
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	5 cut(s)	216, 361, 612, 838, 1026
FauNDI	CATATG	1 cut(s)	849
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	1019
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	356, 800
GluI	GCNGC	1 cut(s)	264
GsaI	CCCAGC	1 cut(s)	793
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	2 cut(s)	251, 324
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	5 cut(s)	220, 365, 616, 842, 1030
HincII	GTYRAC	2 cut(s)	430, 454
HindII	GTYRAC	2 cut(s)	430, 454
HinfI	GANTC	7 cut(s)	269, 279, 317, 352, 392, 548, 674
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	2 cut(s)	117, 858
Hpy166II	GTNNAC	4 cut(s)	223, 430, 454, 692
Hpy188I	TCNGA	6 cut(s)	96, 108, 373, 485, 768, 861
Hpy188III	TCNNGA	4 cut(s)	314, 705, 736, 818
Hpy8I	GTNNAC	4 cut(s)	223, 430, 454, 692
HpyAV	CCTTC	4 cut(s)	241, 378, 453, 958
HpyCH4III	ACNGT	6 cut(s)	227, 331, 439, 541, 880, 937
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 52, 65, 272, 605
HpyF3I	CTNAG	4 cut(s)	186, 627, 714, 960
Hsp92II	CATG	5 cut(s)	220, 365, 616, 842, 1030
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
LmnI	GCTCC	2 cut(s)	641, 823
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	2 cut(s)	356, 800
MaeIII	GTNAC	1 cut(s)	1022
MalI	GATC	8 cut(s)	143, 307, 525, 765, 770, 786, 873, 916
MboI	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
MboII	GAAGA	2 cut(s)	389, 557
MfeI	CAATTG	2 cut(s)	19, 773
MflI	RGATCY	3 cut(s)	305, 768, 784
MhlI	GDGCHC	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	8 cut(s)	19, 156, 415, 567, 618, 632, 773, 948
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	4 cut(s)	273, 278, 326, 542
MmeI	TCCRAC	2 cut(s)	216, 463
MnlI	CCTC	6 cut(s)	71, 585, 814, 922, 996, 1012
Mox20I	TGGCCA	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	2 cut(s)	19, 773
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	5 cut(s)	43, 52, 65, 272, 605
NcoI	CCATGG	1 cut(s)	612
NdeI	CATATG	1 cut(s)	849
NdeII	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
NlaIII	CATG	5 cut(s)	220, 365, 616, 842, 1030
NlaIV	GGNNCC	2 cut(s)	291, 786
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	1 cut(s)	1030
PctI	GAATGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	352, 392, 674
PflMI	CCANNNNNTGG	1 cut(s)	742
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	4 cut(s)	273, 277, 325, 542
PpsI	GAGTC	4 cut(s)	273, 277, 325, 542
Psp6I	CCWGG	1 cut(s)	637
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	291, 786
PspPI	GGNCC	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	305, 768, 784
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	8 cut(s)	141, 305, 523, 763, 768, 784, 871, 914
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	4 cut(s)	273, 278, 326, 542
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	6 cut(s)	471, 594, 646, 669, 801, 969
SfaNI	GCATC	1 cut(s)	931
SfcI	CTRYAG	2 cut(s)	447, 540
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	8 cut(s)	19, 156, 415, 567, 618, 632, 773, 948
SsiI	CCGC	3 cut(s)	266, 513, 988
SspMI	CTAG	2 cut(s)	356, 800
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	6 cut(s)	227, 331, 439, 541, 880, 937
TaqI	TCGA	2 cut(s)	282, 429
TasI	AATT	8 cut(s)	19, 156, 415, 567, 618, 632, 773, 948
TfiI	GAWTC	3 cut(s)	352, 392, 674
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	57, 265, 442
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	836, 959
TspRI	CASTG	3 cut(s)	57, 265, 442
Van91I	CCANNNNNTGG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	1016
XceI	RCATGY	1 cut(s)	1030
XcmI	CCANNNNNNNNNTGG	3 cut(s)	79, 421, 619
XmiI	GTMKAC	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	2 cut(s)	356, 800
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.