Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Reverse (-)

22565309 .. 22566773

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCTCTGATCGGCCGCCTCAATCTTGGTCGGCGCTTCTGCACCGCCGTGCCAAGAAGATCGGAAGACATAATGTCAAACCCAGATTGCCGCCCTTCTGATCTATGCTTGAGGGTCTCGTACTTGATCAGATGCGTTGGGGATCTCGACACGGCGGCGAAGTACGCTCGTTTGGCTGTTTTCACCAGCATCAAATCGGAGTCAACAACAACAATATGTCAATCCATCATCGGAGGCATGTTACGGGATAAAAGGCTCAAGGACGCTTATGATCTCTACGAGTTCTTCTTCAATCAGCATAACCTCAGACCCAACAGCCATTGCTGGAACTACATCATCGAATCTGGTTTCCAACAAGGTCTTGTCAACGATGCTCTGCATTTCCACCACCGATGCATCAATTCCGGTCAGGTCCACGACTACCCAAGCGACGATTCTTTCAGGATCTTGACTAAAGGGTTAGTCCACTCCGGTCGGTTGGACCAAGCCGAAGCCTTTCTTAGAGGCAGGACAGTCAATCGAACCACCTACCCAGATCACGTGGCGTACAACAATCTGATTCGCGGGTTTTTGGATCTTGGAAATTTTAAAAAGGCGAATCTAGTCTTGGGCGAATTCAAACGCTTGTTTTTGATTGCCCTATCCGAGACCAAAGATGATTTGCACCATTCAAACTATGAAAACAGAGTCGCATTCCTGATGGCCACATTCATGGAGTACTGGTTTAAGCAAGGTAAACAGGTGGAAGCTATGGAGTGTTACAACCGCTGTGTTCTATCAAACAGGTTACTGGTTTGTGCCGAAACGGGTAACGCCCTTTTGAAAGTCCTGCTCAAATACGGTGAAAAAAAAAATGCTTGGGCATTGTACCATGAACTCTTAGATAAAAATGGAACCGGTAAGGGTTGCTTGGACTCTGATACCATTAAGATAATGGTGGACGAGTGCTTTGATATGGGTTGGTTTAGTGAGGCTATGGAGACCTACAAAAAGGCGAGACCCAAGAACGACTACCTCAGTGACAAATACATTATTACAAGGTTTTGCGAAAACAGGATGTTGTCAGAAGCAGAGTCTGTTTTTGTTGATTCACTTGCTGATGATTTTGGATATATTGATGTTAACACTTATAAAACAATGATCGATGCTTATGTGAAGGCTGGGAGAATACATGATGCTATAAAAACCTCCAACAAGATGATCGATGCAACTCTAAAGGAGGTCTCCCATCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

412

Amino Acids

47.37

Weight (kDa)

7.89

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1131
AccII	CGCG	1 cut(s)	564
AciI	CCGC	6 cut(s)	16, 45, 91, 155, 564, 766
AclWI	GGATC	3 cut(s)	150, 452, 582
AcoI	YGGCCR	2 cut(s)	13, 702
AcsI	RAATTY	2 cut(s)	583, 614
AcvI	CACGTG	1 cut(s)	541
AfaI	GTAC	5 cut(s)	122, 164, 548, 719, 869
AgeI	ACCGGT	1 cut(s)	896
AgsI	TTSAA	4 cut(s)	292, 619, 672, 823
AhdI	GACNNNNNGTC	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	4 cut(s)	418, 450, 590, 622
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	749
AluI	AGCT	1 cut(s)	749
Alw26I	GTCTC	6 cut(s)	9, 121, 641, 974, 991, 1228
AlwI	GGATC	3 cut(s)	150, 452, 582
AlwNI	CAGNNNCTG	1 cut(s)	1076
AoxI	GGCC	2 cut(s)	13, 702
ApoI	RAATTY	2 cut(s)	583, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	932, 964
AsiGI	ACCGGT	1 cut(s)	896
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	412, 481
AsuHPI	GGTGA	2 cut(s)	175, 854
AvaII	GGWCC	2 cut(s)	412, 481
BalI	TGGCCA	1 cut(s)	704
BbrPI	CACGTG	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	72
BccI	CCATC	3 cut(s)	233, 694, 1236
BceAI	ACGGC	2 cut(s)	32, 168
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	6 cut(s)	9, 121, 641, 974, 991, 1228
BfaI	CTAG	1 cut(s)	602
BfoI	RGCGCY	1 cut(s)	37
BisI	GCNGC	3 cut(s)	16, 91, 156
BlsI	GCNGC	3 cut(s)	17, 92, 157
BmcAI	AGTACT	1 cut(s)	719
Bme18I	GGWCC	2 cut(s)	412, 481
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	412, 481
BmiI	GGNNCC	1 cut(s)	895
BmsI	GCATC	8 cut(s)	122, 198, 361, 383, 405, 1135, 1165, 1195
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	130, 242
Bsa29I	ATCGAT	2 cut(s)	1143, 1203
BsaAI	YACGTR	1 cut(s)	541
BsaI	GGTCTC	5 cut(s)	121, 641, 974, 991, 1228
BsaWI	WCCGGW	3 cut(s)	404, 470, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	2 cut(s)	725, 795
Bse3DI	GCAATG	1 cut(s)	319
BseCI	ATCGAT	2 cut(s)	1143, 1203
BseGI	GGATG	1 cut(s)	1062
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	319, 1030
BseNI	ACTGG	2 cut(s)	725, 795
BseX3I	CGGCCG	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	1160
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	564
Bsh1285I	CGRYCG	2 cut(s)	16, 475
BshFI	GGCC	2 cut(s)	15, 704
BshTI	ACCGGT	1 cut(s)	896
BshVI	ATCGAT	2 cut(s)	1143, 1203
BsiEI	CGRYCG	2 cut(s)	16, 475
BsiSI	CCGG	3 cut(s)	405, 471, 897
BsmAI	GTCTC	6 cut(s)	9, 121, 641, 974, 991, 1228
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	2 cut(s)	15, 704
Bso31I	GGTCTC	5 cut(s)	121, 641, 974, 991, 1228
BspACI	CCGC	6 cut(s)	16, 45, 91, 155, 564, 766
BspANI	GGCC	2 cut(s)	15, 704
BspCNI	CTCAG	2 cut(s)	318, 1029
BspDI	ATCGAT	2 cut(s)	1143, 1203
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	895
BspPI	GGATC	3 cut(s)	150, 452, 582
BspTNI	GGTCTC	5 cut(s)	121, 641, 974, 991, 1228
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	2 cut(s)	725, 795
BssAI	RCCGGY	1 cut(s)	896
Bst4CI	ACNGT	2 cut(s)	514, 842
BstBAI	YACGTR	1 cut(s)	541
BstDEI	CTNAG	4 cut(s)	305, 500, 880, 1016
BstF5I	GGATG	1 cut(s)	1062
BstFNI	CGCG	1 cut(s)	564
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstMAI	GTCTC	6 cut(s)	9, 121, 641, 974, 991, 1228
BstMCI	CGRYCG	2 cut(s)	16, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 173
BstNSI	RCATGY	1 cut(s)	241
BstUI	CGCG	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	3 cut(s)	142, 444, 574
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	3 cut(s)	142, 444, 574
BstZI	CGGCCG	1 cut(s)	13
Bsu15I	ATCGAT	2 cut(s)	1143, 1203
BsuRI	GGCC	2 cut(s)	15, 704
BsuTUI	ATCGAT	2 cut(s)	1143, 1203
BtsCI	GGATG	1 cut(s)	1062
BtsIMutI	CAGTG	1 cut(s)	1024
CaiI	CAGNNNCTG	1 cut(s)	1076
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	2 cut(s)	412, 481
ClaI	ATCGAT	2 cut(s)	1143, 1203
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	5 cut(s)	121, 163, 547, 718, 868
CspAI	ACCGGT	1 cut(s)	896
CviAII	CATG	4 cut(s)	238, 712, 872, 1172
CviQI	GTAC	5 cut(s)	121, 163, 547, 718, 868
DdeI	CTNAG	4 cut(s)	305, 500, 880, 1016
DraI	TTTAAA	1 cut(s)	589
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	2 cut(s)	13, 702
EagI	CGGCCG	1 cut(s)	13
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	13
Eco31I	GGTCTC	5 cut(s)	121, 641, 974, 991, 1228
Eco47I	GGWCC	2 cut(s)	412, 481
Eco52I	CGGCCG	1 cut(s)	13
Eco72I	CACGTG	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	614
EcoT22I	ATGCAT	1 cut(s)	398
FaeI	CATG	4 cut(s)	241, 715, 875, 1175
FalI	AAGNNNNNCTT	4 cut(s)	483, 515, 893, 925
FatI	CATG	4 cut(s)	237, 711, 871, 1171
FauI	CCCGC	1 cut(s)	557
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	16, 91, 156
FokI	GGATG	1 cut(s)	1069
Fsp4HI	GCNGC	3 cut(s)	16, 91, 156
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	16, 91, 156
GsaI	CCCAGC	1 cut(s)	1164
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	15, 704
HapII	CCGG	3 cut(s)	405, 471, 897
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	241, 715, 875, 1175
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	3 cut(s)	204, 367, 1123
HindII	GTYRAC	3 cut(s)	204, 367, 1123
HinfI	GANTC	9 cut(s)	200, 341, 434, 559, 598, 687, 914, 1073, 1088
HpaI	GTTAAC	1 cut(s)	1123
HpaII	CCGG	3 cut(s)	405, 471, 897
HphI	GGTGA	2 cut(s)	175, 854
Hpy166II	GTNNAC	7 cut(s)	204, 367, 415, 466, 737, 940, 1123
Hpy188III	TCNNGA	4 cut(s)	146, 442, 448, 697
Hpy8I	GTNNAC	7 cut(s)	204, 367, 415, 466, 737, 940, 1123
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	105, 1150
HpyCH4III	ACNGT	2 cut(s)	514, 842
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	5 cut(s)	42, 379, 396, 664, 1208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 173
HpyF3I	CTNAG	4 cut(s)	305, 500, 880, 1016
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	4 cut(s)	241, 715, 875, 1175
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	126
KspAI	GTTAAC	1 cut(s)	1123
LweI	GCATC	8 cut(s)	122, 198, 361, 383, 405, 1135, 1165, 1195
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	5 cut(s)	240, 758, 786, 809, 1019
MboII	GAAGA	4 cut(s)	69, 77, 277, 280
MflI	RGATCY	3 cut(s)	142, 444, 574
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	3 cut(s)	400, 583, 614
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	4 cut(s)	209, 696, 908, 1082
MmeI	TCCRAC	3 cut(s)	376, 459, 1215
MnlI	CCTC	9 cut(s)	29, 105, 227, 314, 497, 964, 1025, 1198, 1213
Mox20I	TGGCCA	1 cut(s)	704
Mph1103I	ATGCAT	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	4 cut(s)	588, 726, 927, 1122
MslI	CAYNNNNRTG	2 cut(s)	47, 710
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	768
MspI	CCGG	3 cut(s)	405, 471, 897
Mva1269I	GAATGC	1 cut(s)	692
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	2 cut(s)	164, 173
NlaIII	CATG	4 cut(s)	241, 715, 875, 1175
NlaIV	GGNNCC	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	1019
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	47
PctI	GAATGC	1 cut(s)	692
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	5 cut(s)	341, 434, 559, 598, 1088
PinAI	ACCGGT	1 cut(s)	896
PkrI	GCNGC	3 cut(s)	17, 92, 157
PleI	GAGTC	4 cut(s)	208, 695, 908, 1081
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	4 cut(s)	208, 695, 908, 1081
Ppu21I	YACGTR	1 cut(s)	541
PsiI	TTATAA	1 cut(s)	1131
PspCI	CACGTG	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	1160
PspN4I	GGNNCC	1 cut(s)	895
PspPI	GGNCC	2 cut(s)	412, 481
PstNI	CAGNNNCTG	1 cut(s)	1076
PsuI	RGATCY	3 cut(s)	142, 444, 574
RsaI	GTAC	5 cut(s)	122, 164, 548, 719, 869
RsaNI	GTAC	5 cut(s)	121, 163, 547, 718, 868
RseI	CAYNNNNRTG	2 cut(s)	47, 710
SaqAI	TTAA	4 cut(s)	588, 726, 927, 1122
SatI	GCNGC	3 cut(s)	16, 91, 156
Sau96I	GGNCC	2 cut(s)	412, 481
ScaI	AGTACT	1 cut(s)	719
SchI	GAGTC	4 cut(s)	209, 696, 908, 1082
SfaNI	GCATC	8 cut(s)	122, 198, 361, 383, 405, 1135, 1165, 1195
SinI	GGWCC	2 cut(s)	412, 481
SmiMI	CAYNNNNRTG	2 cut(s)	47, 710
SmlI	CTYRAG	2 cut(s)	109, 257
SmoI	CTYRAG	2 cut(s)	109, 257
Sse9I	AATT	3 cut(s)	400, 583, 614
SsiI	CCGC	6 cut(s)	16, 45, 91, 155, 564, 766
SspMI	CTAG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	514, 842
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	5 cut(s)	147, 339, 520, 1143, 1203
TasI	AATT	3 cut(s)	400, 583, 614
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	3 cut(s)	18, 93, 158
TfiI	GAWTC	5 cut(s)	341, 434, 559, 598, 1088
Tru1I	TTAA	4 cut(s)	588, 726, 927, 1122
Tru9I	TTAA	4 cut(s)	588, 726, 927, 1122
TscAI	CASTG	1 cut(s)	1024
TseFI	GTSAC	1 cut(s)	1019
Tsp45I	GTSAC	1 cut(s)	1019
TspDTI	ATGAA	3 cut(s)	693, 700, 888
TspRI	CASTG	1 cut(s)	1024
VpaK11BI	GGWCC	2 cut(s)	412, 481
XapI	RAATTY	2 cut(s)	583, 614
XceI	RCATGY	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	602
ZrmI	AGTACT	1 cut(s)	719
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.