Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10270 AT3G60980 |
| fragaria_vesca | FvH4_5g27880 |
| malus_domestica | MD08G1246600.v1.1 MD15G1441500.v1.1 |
| prunus_persica | Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 |
| pyrus_communis | pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590 |
| rosa_chinensis | RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071 |
| rosa_laevigata | RLG00000002259 RLG00000024069 |
| rosa_multiflora | Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00239800 Rroxscaffold_6G00408800 |
| rosa_rugosa | Rorug07G0188700 |
| rosa_samantha | Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000 |
| rosa_wichuraiana | Rw7G027990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 19 |
| AclWI | GGATC | 1 cut(s) | 113 |
| AcsI | RAATTY | 3 cut(s) | 93, 263, 332 |
| AgsI | TTSAA | 3 cut(s) | 100, 221, 281 |
| AluBI | AGCT | 1 cut(s) | 240 |
| AluI | AGCT | 1 cut(s) | 240 |
| Alw26I | GTCTC | 1 cut(s) | 316 |
| AlwI | GGATC | 1 cut(s) | 113 |
| ApoI | RAATTY | 3 cut(s) | 93, 263, 332 |
| AsuHPI | GGTGA | 2 cut(s) | 50, 188 |
| BclI | TGATCA | 1 cut(s) | 153 |
| BcoDI | GTCTC | 1 cut(s) | 316 |
| BfaI | CTAG | 1 cut(s) | 30 |
| BmrI | ACTGGG | 1 cut(s) | 302 |
| BmsI | GCATC | 1 cut(s) | 121 |
| BmuI | ACTGGG | 1 cut(s) | 302 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaWI | WCCGGW | 1 cut(s) | 298 |
| Bse1I | ACTGG | 3 cut(s) | 135, 207, 308 |
| Bse3DI | GCAATG | 1 cut(s) | 175 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseGI | GGATG | 2 cut(s) | 13, 227 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseMI | GCAATG | 1 cut(s) | 175 |
| BseMII | CTCAG | 1 cut(s) | 45 |
| BseNI | ACTGG | 3 cut(s) | 135, 207, 308 |
| BseRI | GAGGAG | 4 cut(s) | 232, 235, 238, 241 |
| BsiSI | CCGG | 1 cut(s) | 299 |
| BslFI | GGGAC | 1 cut(s) | 289 |
| BsmAI | GTCTC | 1 cut(s) | 316 |
| BsmFI | GGGAC | 1 cut(s) | 289 |
| Bsp143I | GATC | 2 cut(s) | 118, 153 |
| BspACI | CCGC | 1 cut(s) | 19 |
| BspCNI | CTCAG | 1 cut(s) | 46 |
| BspPI | GGATC | 1 cut(s) | 113 |
| BsrDI | GCAATG | 1 cut(s) | 175 |
| BsrI | ACTGG | 3 cut(s) | 135, 207, 308 |
| BssMI | GATC | 2 cut(s) | 118, 153 |
| Bst4CI | ACNGT | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 1 cut(s) | 238 |
| BstDEI | CTNAG | 1 cut(s) | 54 |
| BstF5I | GGATG | 2 cut(s) | 13, 227 |
| BstKTI | GATC | 2 cut(s) | 121, 156 |
| BstMAI | GTCTC | 1 cut(s) | 316 |
| BstMBI | GATC | 2 cut(s) | 118, 153 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 281, 290 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BtsCI | GGATG | 2 cut(s) | 13, 227 |
| BtsI | GCAGTG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 1 cut(s) | 238 |
| CviJI | RGCY | 5 cut(s) | 163, 192, 236, 240, 275 |
| CviKI_1 | RGCY | 5 cut(s) | 163, 192, 236, 240, 275 |
| DdeI | CTNAG | 1 cut(s) | 54 |
| DpnI | GATC | 2 cut(s) | 120, 155 |
| DpnII | GATC | 2 cut(s) | 118, 153 |
| FaiI | YATR | 5 cut(s) | 144, 200, 257, 319, 321 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FaqI | GGGAC | 1 cut(s) | 289 |
| FauI | CCCGC | 1 cut(s) | 12 |
| FauNDI | CATATG | 1 cut(s) | 319 |
| FbaI | TGATCA | 1 cut(s) | 153 |
| FokI | GGATG | 2 cut(s) | 20, 214 |
| FspBI | CTAG | 1 cut(s) | 30 |
| HapII | CCGG | 1 cut(s) | 299 |
| HinfI | GANTC | 1 cut(s) | 302 |
| HpaII | CCGG | 1 cut(s) | 299 |
| HphI | GGTGA | 2 cut(s) | 50, 188 |
| Hpy166II | GTNNAC | 3 cut(s) | 51, 82, 179 |
| Hpy188I | TCNGA | 1 cut(s) | 158 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 278 |
| Hpy8I | GTNNAC | 3 cut(s) | 51, 82, 179 |
| HpyAV | CCTTC | 2 cut(s) | 67, 167 |
| HpyCH4III | ACNGT | 1 cut(s) | 86 |
| HpyCH4V | TGCA | 2 cut(s) | 89, 168 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 281, 290 |
| HpyF3I | CTNAG | 1 cut(s) | 54 |
| Ksp22I | TGATCA | 1 cut(s) | 153 |
| Kzo9I | GATC | 2 cut(s) | 118, 153 |
| LmnI | GCTCC | 1 cut(s) | 245 |
| LpnPI | CCDG | 6 cut(s) | 141, 148, 188, 250, 312, 321 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeI | CTAG | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 38 |
| MalI | GATC | 2 cut(s) | 120, 155 |
| MboI | GATC | 2 cut(s) | 118, 153 |
| MboII | GAAGA | 2 cut(s) | 112, 335 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MluCI | AATT | 3 cut(s) | 93, 263, 332 |
| MlyI | GAGTC | 1 cut(s) | 311 |
| MnlI | CCTC | 6 cut(s) | 152, 225, 253, 256, 259, 262 |
| MspI | CCGG | 1 cut(s) | 299 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 281, 290 |
| NdeI | CATATG | 1 cut(s) | 319 |
| NdeII | GATC | 2 cut(s) | 118, 153 |
| NmuCI | GTSAC | 1 cut(s) | 38 |
| PleI | GAGTC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 310 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| Sau3AI | GATC | 2 cut(s) | 118, 153 |
| SchI | GAGTC | 1 cut(s) | 311 |
| SetI | ASST | 3 cut(s) | 48, 178, 242 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| Sse9I | AATT | 3 cut(s) | 93, 263, 332 |
| SsiI | CCGC | 1 cut(s) | 19 |
| SspMI | CTAG | 1 cut(s) | 30 |
| TaaI | ACNGT | 1 cut(s) | 86 |
| TasI | AATT | 3 cut(s) | 93, 263, 332 |
| TscAI | CASTG | 1 cut(s) | 84 |
| TseFI | GTSAC | 1 cut(s) | 38 |
| Tsp45I | GTSAC | 1 cut(s) | 38 |
| TspDTI | ATGAA | 2 cut(s) | 186, 336 |
| TspRI | CASTG | 1 cut(s) | 84 |
| XapI | RAATTY | 3 cut(s) | 93, 263, 332 |
| XspI | CTAG | 1 cut(s) | 30 |