Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Forward (+)

31066249 .. 31067231

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1246600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCATTCTACCGCCTGCTCCTCCGCTCTCTCCGCCGCCCTTCTACCCCAACAACCCTACCCCTAACCCAATCCCTCACCTCCCTCCACCTCCACAACCCCAACCCAAACATTCCTCTCCATCTCACCACCCCCACGCGCACCTTCGCTTTCTCCTCCGCCGAAGAAGCCGCTGCTGAGCGCAGACGTCGCAAGCGCCGCCTCCGCATCGAGCCCCCGCTCAACGCCCTCCGTCGGGACTCACGCCCCCCTCCCCCACGGGACCCGAACGCTCCCCGCCTACCTGATACCACCTCCGCCCTCGTCGGCCCCCGCCTCAACCTCCACAACCGCGTCCAGTCGCTCATCCGAGCCGGAGACTTGGACGCAGCCTCCGAGGTTGCGCGCCACTCGGTTTTCTCCAACACTCGCCCCACCGTCTTCACCTGCAACGCCATTGTGGCTGCAATGTATCGCGCCAAGAGGTACAATGACGCTATTGCCCTTTTCCACTTCTTCTTCAATCAATCAAACATTGTTCCTAACATTGTATCTTATAATAATTTGATTAATACTCATTGCGATGAGGGCCGTGTCGATGTGGGACTGGAGATTTATCGGCATATAATTGCAAATTGCCCCTACAGTCCCTCGCCAGTGACATACCGGCATTTGACTAAAGGGTTGGTTGATGCTGGGAGGATAGGTGAGGGTGTGGACTTGTTGAGGGAGATGTTGAATAAGGGCCACGGAGCGGATTCTTTGGTTTTTAATAATTTGATTAAGGGGTTCTTACATTTGGAGAATATGGAGAAGGCTGTTGAGCTTTTTGATGAGCTTAAAGAGAGATGGGAAAGAGAAGGAGGCGATGGAGTCATACAAGTCCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

291

Amino Acids

32.75

Weight (kDa)

9.78

Isoelectric Point (pI)

59.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	171 - 194	8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	434
AatII	GACGTC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	434
AccBSI	CCGCTC	3 cut(s)	27, 220, 734
AccII	CGCG	4 cut(s)	139, 333, 385, 456
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	234, 235, 733
AgsI	TTSAA	2 cut(s)	502, 718
AluBI	AGCT	2 cut(s)	805, 817
AluI	AGCT	2 cut(s)	805, 817
Alw26I	GTCTC	1 cut(s)	351
AoxI	GGCC	3 cut(s)	307, 568, 724
ApeKI	GCWGC	3 cut(s)	173, 368, 443
AseI	ATTAAT	1 cut(s)	549
AspLEI	GCGC	6 cut(s)	141, 183, 198, 385, 387, 458
AspS9I	GGNCC	4 cut(s)	262, 308, 568, 724
AsuHPI	GGTGA	4 cut(s)	70, 118, 415, 698
AvaII	GGWCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	160, 380, 430
BccI	CCATC	3 cut(s)	129, 822, 842
BceAI	ACGGC	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	6 cut(s)	37, 171, 174, 199, 369, 444
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	6 cut(s)	38, 172, 175, 200, 370, 445
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	4 cut(s)	262, 308, 568, 724
BmiI	GGNNCC	3 cut(s)	263, 264, 310
BmsI	GCATC	2 cut(s)	216, 661
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	608
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	3 cut(s)	257, 375, 727
BsaXI	ACNNNNNCTCC	4 cut(s)	356, 386, 670, 700
Bsc4I	CCNNNNNNNGG	3 cut(s)	234, 235, 733
Bse118I	RCCGGY	1 cut(s)	645
Bse1I	ACTGG	3 cut(s)	337, 591, 635
Bse3DI	GCAATG	2 cut(s)	453, 556
BseDI	CCNNGG	3 cut(s)	257, 375, 727
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	3 cut(s)	234, 235, 733
BseMI	GCAATG	2 cut(s)	453, 556
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	337, 591, 635
BsePI	GCGCGC	1 cut(s)	383
BseRI	GAGGAG	2 cut(s)	11, 145
BseXI	GCAGC	3 cut(s)	160, 380, 430
BseYI	CCCAGC	1 cut(s)	674
Bsh1236I	CGCG	4 cut(s)	139, 333, 385, 456
BshFI	GGCC	3 cut(s)	309, 570, 726
BsiSI	CCGG	2 cut(s)	354, 646
BslFI	GGGAC	4 cut(s)	251, 275, 597, 612
BslI	CCNNNNNNNGG	3 cut(s)	234, 235, 733
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	4 cut(s)	251, 275, 597, 612
BsnI	GGCC	3 cut(s)	309, 570, 726
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp1720I	GCTNAGC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	309, 570, 726
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	4 cut(s)	139, 333, 385, 456
BspLI	GGNNCC	3 cut(s)	263, 264, 310
BspMI	ACCTGC	1 cut(s)	434
BsrBI	CCGCTC	3 cut(s)	27, 220, 734
BsrDI	GCAATG	2 cut(s)	453, 556
BsrFI	RCCGGY	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	337, 591, 635
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	3 cut(s)	257, 375, 727
BssHII	GCGCGC	1 cut(s)	383
BssNI	GRCGYC	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	418, 626
BstACI	GRCGYC	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	17, 194, 385
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	2 cut(s)	257, 727
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	4 cut(s)	139, 333, 385, 456
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	6 cut(s)	141, 183, 198, 385, 387, 458
BstMAI	GTCTC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 167, 189, 198, 204, 440, 567
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	4 cut(s)	139, 333, 385, 456
BstV1I	GCAGC	3 cut(s)	160, 380, 430
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	309, 570, 726
BtgI	CCRYGG	2 cut(s)	257, 727
BtgZI	GCGATG	2 cut(s)	576, 861
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	17, 194, 385
CfoI	GCGC	6 cut(s)	141, 183, 198, 385, 387, 458
Cfr10I	RCCGGY	1 cut(s)	645
Cfr13I	GGNCC	4 cut(s)	262, 308, 568, 724
CseI	GACGC	3 cut(s)	322, 374, 482
Csp6I	GTAC	1 cut(s)	466
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	177
EciI	GGCGGA	3 cut(s)	23, 148, 286
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	216
FaiI	YATR	6 cut(s)	537, 603, 605, 643, 788, 857
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	4 cut(s)	251, 275, 597, 612
FauI	CCCGC	3 cut(s)	225, 284, 320
Fnu4HI	GCNGC	6 cut(s)	37, 171, 174, 199, 369, 444
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	6 cut(s)	37, 171, 174, 199, 369, 444
GlaI	GCGC	6 cut(s)	140, 182, 197, 384, 386, 457
GluI	GCNGC	6 cut(s)	37, 171, 174, 199, 369, 444
GsaI	CCCAGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	608
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	309, 570, 726
HapII	CCGG	2 cut(s)	354, 646
HgaI	GACGC	3 cut(s)	322, 374, 482
HhaI	GCGC	6 cut(s)	141, 183, 198, 385, 387, 458
Hin1I	GRCGYC	1 cut(s)	187
Hin6I	GCGC	6 cut(s)	139, 181, 196, 383, 385, 456
HinP1I	GCGC	6 cut(s)	139, 181, 196, 383, 385, 456
HinfI	GANTC	3 cut(s)	239, 737, 852
HpaII	CCGG	2 cut(s)	354, 646
HphI	GGTGA	4 cut(s)	70, 118, 415, 698
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	2 cut(s)	350, 376
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	697
Hpy99I	CGWCG	3 cut(s)	192, 237, 308
HpyAV	CCTTC	4 cut(s)	51, 154, 787, 833
HpyCH4III	ACNGT	2 cut(s)	418, 626
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	429, 446, 611
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 167, 189, 198, 204, 440, 567
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	187
Hsp92I	GRCGYC	1 cut(s)	187
HspAI	GCGC	6 cut(s)	139, 181, 196, 383, 385, 456
KflI	GGGWCCC	1 cut(s)	262
LmnI	GCTCC	3 cut(s)	24, 277, 731
LpnPI	CCDG	9 cut(s)	29, 297, 350, 367, 439, 572, 648, 659, 660
Lsp1109I	GCAGC	3 cut(s)	160, 380, 430
LweI	GCATC	2 cut(s)	216, 661
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	637
MbiI	CCGCTC	3 cut(s)	27, 220, 734
MboII	GAAGA	4 cut(s)	176, 412, 487, 490
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	4 cut(s)	541, 606, 613, 754
MlyI	GAGTC	2 cut(s)	233, 861
MmeI	TCCRAC	1 cut(s)	426
MseI	TTAA	4 cut(s)	549, 750, 762, 819
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	354, 646
MvnI	CGCG	4 cut(s)	139, 333, 385, 456
MwoI	GCNNNNNNNGC	7 cut(s)	33, 167, 189, 198, 204, 440, 567
NlaIV	GGNNCC	3 cut(s)	263, 264, 310
NmuCI	GTSAC	1 cut(s)	637
PaqCI	CACCTGC	1 cut(s)	434
PauI	GCGCGC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	737
PkrI	GCNGC	6 cut(s)	38, 172, 175, 200, 370, 445
PleI	GAGTC	2 cut(s)	233, 860
PpsI	GAGTC	2 cut(s)	233, 860
PpuMI	RGGWCCY	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	674
PspN4I	GGNNCC	3 cut(s)	263, 264, 310
PspPI	GGNCC	4 cut(s)	262, 308, 568, 724
PspPPI	RGGWCCY	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	383
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	4 cut(s)	549, 750, 762, 819
SatI	GCNGC	6 cut(s)	37, 171, 174, 199, 369, 444
Sau96I	GGNCC	4 cut(s)	262, 308, 568, 724
SchI	GAGTC	2 cut(s)	233, 861
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	216, 661
SfcI	CTRYAG	1 cut(s)	622
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	561
Sse9I	AATT	4 cut(s)	541, 606, 613, 754
TaaI	ACNGT	2 cut(s)	418, 626
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	210, 576
TasI	AATT	4 cut(s)	541, 606, 613, 754
TauI	GCSGC	3 cut(s)	39, 173, 201
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	4 cut(s)	549, 750, 762, 819
Tru9I	TTAA	4 cut(s)	549, 750, 762, 819
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	173, 368, 443
Tsp45I	GTSAC	1 cut(s)	637
TspGWI	ACGGA	2 cut(s)	221, 744
TspRI	CASTG	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	262
VspI	ATTAAT	1 cut(s)	549
ZraI	GACGTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.