Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Reverse (-)

18521488 .. 18522695

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTACCGCGGCAAGAGGTACAATGACGCTATTGCTCTCTTCCACTTCTTTTTCAACCAATCCAACATTGTTCCCAACATTGTCTCTTATAATTATTTGATTAACACTCATTGTGATGAGAGCCGTGTCGACGTGGGGCTTGAGATTTACCGCCATATCATTGCCACCTCCCCCTTTAGTCCCTCGCCGGTGACGTACCGGCATTTGACTAAAGGGTTGATTGATGCCGGTAGGATAGGTGACGCCGTGGACTTGTTGAGGGAGATGTTGAATAAGGGGCACGGTGCTGATTTTTTGGTTTTCAATAACTTGATCAAAGGGTTCTTGAATTTGGAGAATTTGGACAAGGCCAATGAGCTTTTTGACGAGCAGGTGTTTGGTGTAGATGGGGTTGTCAATGCCACCTTTATGGATTGGTTCTTCAATAAGGGGAAAGAGAAGGAGGCAATGGATTCATACAGGTCATTGCTTGATAGGCAGTTTAGGATGATCCCAGCTACCTGCAATGTTCTCTTGGAAGTGTTGCTTAAGCATGACAAGAAGGAGGCGTGGGCTTTGTTCGAACAAATACTGGATAATCACACCCCACCCAATACCCAGGCAGTTAACTCCGAGACTTTTAATATGATGGTCAATGAGTGTTTTAAGCTTGGGAAGTTTGGTGAGGCGTTTGACACCTTCAAGAAGGTGGGAACAAATGTGAAGTCAAAGCCTTTTTCCATGGACGTTGCGGGGTATAATAATATCATTGCTAGGTATTGTGAGAATGGGATGTTATCGGAGGCTGATGAACTATTTAGAGAATTGTCGTCAAAGTCACTGACCCCAGACGTAACAACACATAGGACTCTGATTGATGCATATTTGAATTTAGAGAGGATAGATGATGCTCTTAAGATATTTAACAGAATGGTGGATGTTGGGTTGCGGGTGGTTGCTAGTTTTGGTGACAAGGTGTTTACTGAGTTGATTGAGAATGGGAAGGCAGTGGACTGTGCAAAAATTTTGAAGAAAATGGGAGATAAAGATCCTAAACCAGATGCCAGTTGCTATGATGTAGTGATCAGAGGGCTTTGCAATGAAGGTGAACTTGACCCAAGCCTTGATATACTGGCAGAAATGGTGAGATATGGCATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

380

Amino Acids

43.12

Weight (kDa)

5.26

Isoelectric Point (pI)

23.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	242 - 289	7e-12	PPR repeat family
TPR_24	PF23276	256 - 370	4.2e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	2 cut(s)	361, 509
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	9
AciI	CCGC	5 cut(s)	7, 9, 151, 731, 928
AclWI	GGATC	2 cut(s)	484, 1022
AcsI	RAATTY	4 cut(s)	328, 337, 868, 1002
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	3 cut(s)	5, 20, 197
AflII	CTTAAG	2 cut(s)	527, 893
AgsI	TTSAA	8 cut(s)	55, 271, 304, 328, 424, 682, 868, 1009
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	3 cut(s)	358, 497, 649
AluI	AGCT	3 cut(s)	358, 497, 649
Alw26I	GTCTC	2 cut(s)	88, 608
AlwI	GGATC	2 cut(s)	484, 1022
AoxI	GGCC	1 cut(s)	348
ApoI	RAATTY	4 cut(s)	328, 337, 868, 1002
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
AsuHPI	GGTGA	6 cut(s)	202, 251, 674, 959, 1097, 1135
AsuII	TTCGAA	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	282
BccI	CCATC	2 cut(s)	380, 622
BceAI	ACGGC	2 cut(s)	108, 230
BciT130I	CCWGG	1 cut(s)	599
BclI	TGATCA	2 cut(s)	312, 1062
BcoDI	GTCTC	2 cut(s)	88, 608
BfaI	CTAG	2 cut(s)	753, 939
BfrI	CTTAAG	2 cut(s)	527, 893
BfuAI	ACCTGC	2 cut(s)	361, 509
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	4 cut(s)	214, 847, 877, 1030
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	4 cut(s)	7, 246, 597, 720
Bse118I	RCCGGY	3 cut(s)	187, 198, 227
Bse1I	ACTGG	3 cut(s)	576, 1044, 1116
Bse3DI	GCAATG	6 cut(s)	159, 453, 464, 511, 747, 1084
Bse8I	GATNNNNATC	1 cut(s)	1026
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	4 cut(s)	7, 246, 597, 720
BseGI	GGATG	3 cut(s)	492, 777, 922
BseJI	GATNNNNATC	1 cut(s)	1026
BseMI	GCAATG	6 cut(s)	159, 453, 464, 511, 747, 1084
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	3 cut(s)	576, 1044, 1116
BseSI	GKGCMC	1 cut(s)	282
BseYI	CCCAGC	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	188, 199, 228
BslFI	GGGAC	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	88, 608
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	312, 489, 1027, 1062
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	5 cut(s)	7, 9, 151, 731, 928
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	955
BspFNI	CGCG	1 cut(s)	9
BspMI	ACCTGC	2 cut(s)	361, 509
BspPI	GGATC	2 cut(s)	484, 1022
BspT104I	TTCGAA	1 cut(s)	561
BspTI	CTTAAG	2 cut(s)	527, 893
BsrDI	GCAATG	6 cut(s)	159, 453, 464, 511, 747, 1084
BsrFI	RCCGGY	3 cut(s)	187, 198, 227
BsrI	ACTGG	3 cut(s)	576, 1044, 1116
BssAI	RCCGGY	3 cut(s)	187, 198, 227
BssECI	CCNNGG	4 cut(s)	7, 246, 597, 720
BssMI	GATC	4 cut(s)	312, 489, 1027, 1062
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	284, 995
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	243
BstAFI	CTTAAG	2 cut(s)	527, 893
BstBI	TTCGAA	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	963
BstDSI	CCRYGG	3 cut(s)	7, 246, 720
BstF5I	GGATG	3 cut(s)	492, 777, 922
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	4 cut(s)	315, 492, 1030, 1065
BstMAI	GTCTC	2 cut(s)	88, 608
BstMBI	GATC	4 cut(s)	312, 489, 1027, 1062
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	282
BstUI	CGCG	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	1027
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	1027
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	3 cut(s)	7, 246, 720
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	492, 777, 922
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	2 cut(s)	818, 993
BveI	ACCTGC	2 cut(s)	361, 509
Cfr10I	RCCGGY	3 cut(s)	187, 198, 227
Cfr42I	CCGCGG	1 cut(s)	10
CseI	GACGC	2 cut(s)	35, 251
Csp6I	GTAC	3 cut(s)	4, 19, 196
CviAII	CATG	2 cut(s)	533, 721
CviQI	GTAC	3 cut(s)	4, 19, 196
DdeI	CTNAG	1 cut(s)	963
DpnI	GATC	4 cut(s)	314, 491, 1029, 1064
DpnII	GATC	4 cut(s)	312, 489, 1027, 1062
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	720
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	720
EcoT22I	ATGCAT	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	2 cut(s)	536, 724
FalI	AAGNNNNNCTT	4 cut(s)	510, 542, 1074, 1106
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	2 cut(s)	532, 720
FauI	CCCGC	2 cut(s)	724, 921
FbaI	TGATCA	2 cut(s)	312, 1062
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	3 cut(s)	499, 784, 929
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	2 cut(s)	753, 939
GluI	GCNGC	1 cut(s)	10
GsaI	CCCAGC	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	188, 199, 228
HgaI	GACGC	2 cut(s)	35, 251
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	536, 724
HincII	GTYRAC	2 cut(s)	130, 607
HindII	GTYRAC	2 cut(s)	130, 607
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	2 cut(s)	452, 847
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	3 cut(s)	188, 199, 228
HphI	GGTGA	6 cut(s)	202, 251, 674, 959, 1097, 1135
Hpy166II	GTNNAC	6 cut(s)	130, 250, 607, 960, 991, 1088
Hpy188I	TCNGA	4 cut(s)	613, 781, 852, 1067
Hpy188III	TCNNGA	2 cut(s)	325, 682
Hpy8I	GTNNAC	6 cut(s)	130, 250, 607, 960, 991, 1088
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	6 cut(s)	433, 535, 679, 688, 976, 1076
HpyCH4III	ACNGT	2 cut(s)	284, 995
HpyCH4IV	ACGT	4 cut(s)	132, 194, 726, 831
HpyCH4V	TGCA	4 cut(s)	504, 860, 998, 1077
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	1 cut(s)	963
HpySE526I	ACGT	4 cut(s)	132, 194, 726, 831
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	536, 724
Ksp22I	TGATCA	2 cut(s)	312, 1062
KspAI	GTTAAC	1 cut(s)	607
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	312, 489, 1027, 1062
LweI	GCATC	4 cut(s)	214, 847, 877, 1030
MaeI	CTAG	2 cut(s)	753, 939
MaeII	ACGT	4 cut(s)	132, 194, 726, 831
MaeIII	GTNAC	5 cut(s)	190, 239, 816, 832, 947
MalI	GATC	4 cut(s)	314, 491, 1029, 1064
MboI	GATC	4 cut(s)	312, 489, 1027, 1062
MboII	GAAGA	3 cut(s)	31, 412, 1021
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	6 cut(s)	91, 328, 337, 803, 868, 1002
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	862
MseI	TTAA	7 cut(s)	102, 528, 606, 621, 645, 894, 903
MslI	CAYNNNNRTG	2 cut(s)	114, 407
MspA1I	CMGCKG	1 cut(s)	9
MspCI	CTTAAG	2 cut(s)	527, 893
MspI	CCGG	3 cut(s)	188, 199, 228
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	4 cut(s)	312, 489, 1027, 1062
NlaIII	CATG	2 cut(s)	536, 724
NmuCI	GTSAC	4 cut(s)	190, 239, 816, 947
NsiI	ATGCAT	1 cut(s)	862
NspV	TTCGAA	1 cut(s)	561
PaqCI	CACCTGC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	597
PsuI	RGATCY	1 cut(s)	1027
RsaI	GTAC	3 cut(s)	5, 20, 197
RsaNI	GTAC	3 cut(s)	4, 19, 196
RseI	CAYNNNNRTG	2 cut(s)	114, 407
SacII	CCGCGG	1 cut(s)	10
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	7 cut(s)	102, 528, 606, 621, 645, 894, 903
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	4 cut(s)	312, 489, 1027, 1062
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	4 cut(s)	214, 847, 877, 1030
Sfr303I	CCGCGG	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	561
SgrAI	CRCCGGYG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	114, 407
SmlI	CTYRAG	3 cut(s)	140, 527, 893
SmoI	CTYRAG	3 cut(s)	140, 527, 893
Sse9I	AATT	6 cut(s)	91, 328, 337, 803, 868, 1002
SsiI	CCGC	5 cut(s)	7, 9, 151, 731, 928
SspMI	CTAG	2 cut(s)	753, 939
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	284, 995
TaiI	ACGT	4 cut(s)	135, 197, 729, 834
TaqI	TCGA	2 cut(s)	129, 561
TasI	AATT	6 cut(s)	91, 328, 337, 803, 868, 1002
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	7 cut(s)	102, 528, 606, 621, 645, 894, 903
Tru9I	TTAA	7 cut(s)	102, 528, 606, 621, 645, 894, 903
TscAI	CASTG	2 cut(s)	825, 993
TseFI	GTSAC	4 cut(s)	190, 239, 816, 947
Tsp45I	GTSAC	4 cut(s)	190, 239, 816, 947
TspDTI	ATGAA	3 cut(s)	444, 804, 1095
TspRI	CASTG	2 cut(s)	825, 993
Vha464I	CTTAAG	2 cut(s)	527, 893
XapI	RAATTY	4 cut(s)	328, 337, 868, 1002
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	753, 939
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.