Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Reverse (-)

30628629 .. 30630984

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGTCACTCTACCGCCTGCTCCTCCGCTCTCTCCGCCGCCCAACCACCACCCCACAACCCATAACCCAATCCCAATCCCTAACCTCCCTCATCCTCCAAAACCCTATCTCCAATCCTCACTCTCTCACCACCACCCGCTCCTTCGCCTATTCCACAGCCGAAGAAGCCGCCGCCGAGCGCCGCCGCCGCAAGCGCCGCCTCCGCATAGAGCCCCCGCTCGACGCGCTCCGTCGCAGCTCCGGCCCGCCCCCTCCGCGCGACCCCAACGCGCCCCGCCTCCCCGACTCGACCTCCGCCCTCGTCGGCCCTCGCCTCAACCTCCACAACCGCGTTCAGTCCCTCATACGCGCCGGCGACCTCGACGCCGCCTCTGCCGTGGCGCGCCACTCCGTCTTCTCCAACACGCGCCCCACCGTCTTCACCTGCAACGCCATCATCGCCGCCATGTACCGCGGCAAGAGGTACAATGACGCTATTGCCCTCTTCCACTTCTTTTTCAACCAATCCAACATTGTTCCCAACATTGTATCTTATAATAATTTGATTAACACTCACTGTGATGAGGGCCGTGTCGATGTGGGTCTTGAGATTTACCGGCATATCATTGCCACTGCCCCTTTTAGCCCCTCGCCGGTGACGTACCGGCATTTGACTAAAGGGCTGATTGATGCCGGTAGGATAGGTGACGCCGTGGACTTGTTGAGGGAGATGTTGAATAAGGGGCATGGTGCTGATTCTTTGGTTTTCAATAACTTGATTAAAGGGTTCTTGGATTTGGAGAATTTGGACAAGGCCAATGAGCTTTTCGACGAGCTTAAGGAGAGGTGTTTGGTGTATGATGGGGTTGTCAATGCCACCTTTATGGATTGGTTCTTCAATAAGGGGAAAGAGAAGGAGGCCATGGATTCATACAGGTACTTGCTTGATAGGCAGTTTAGGATGATCCCAGCTACCTGCAATGTTCTCTTGGAAGTGTTGCTTAAGCATGGCAAGAAGAAGGAGGCATGGGCTTTGTTTGAACAAATGCTGGATAATCACACCCCGCCCAATTTCCAGGCAGTTAATTCTGAGACTTTTAATATAATGGTCAATGAGTGTTTTAAGCTTGGCAAGTTTGGTGAGGCGTTTGACACCTTCAAGAAGGTGGGAACAAATGTGAAGTCAAAGCCTTTTTCCATGGACGTGGCGGGGTATAATAATATCATTGCTAGGTATTGTGAAGTTGGGATGTTATTGGAGGCTGATCAACTATTTACAGAATTATCGTCAAAGTCGCTGACCCCAGACGTAACAACACATAAGACTCTGATTGATGCATATTTGAATGTAGAGAGGATAGATGATGCTCTTAAGATATTTAATAGAATGGTGGATGTTGGGTTGCGAGTGGTTGCTAGTTTTGGTAACAGGGTGTTTACTGAGTTGATTAAGAATGGGAAAGCACTGGACTGTGCAAAATTTTTGAAGAAAATGGGAGAGAAAGATCCTAAACCAGATGCCAGTTGCTATGATGTTGTGATCAGGGGGCTTTGCAATGAAGGTGAACTTGACCCAAGCCTTGATTTACTGGCAGAAATGGTGAGATATGGCATTGGTGTTCCTCCTGCACTGAAGCAATTCGTATACGAGGCTTTTGAAAAAGCTGGGCGTGGCGGACAGATTGAGAGAACATTAACTGAGACTAGGTACACACCACCTCCCAGAATGGCACCACCACGTCAGTTCCCGCCCATAAGATCACCTCAAATGGCAGGACCACAGGAATCACCATCAGGAACCTCTCAGATGGCAGGACTGGATCACCTATCATCAGCTGCCTCTCAAATGGCTGGACCATATCAGCCATCATCTGGGCCTGCTCAAGGGTCTGGATCACACCAATCCCCATCACAATCAGGGAACTCTCAAACGATGGAACATGTAACAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

644

Amino Acids

71.69

Weight (kDa)

8.85

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	318 - 351	2.5e-06	PPR repeat family
PPR_2	PF13041	394 - 441	5.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	2 cut(s)	431, 962
AccB1I	GGYRCC	1 cut(s)	1708
AccB7I	CCANNNNNTGG	1 cut(s)	1850
AccBSI	CCGCTC	3 cut(s)	27, 138, 217
AccI	GTMKAC	1 cut(s)	1623
AccII	CGCG	9 cut(s)	224, 256, 258, 269, 330, 348, 382, 406, 453
AclWI	GGATC	4 cut(s)	937, 1478, 1806, 1879
AcsI	RAATTY	2 cut(s)	781, 1457
AcuI	CTGAAG	1 cut(s)	1631
AcyI	GRCGYC	2 cut(s)	363, 687
AfaI	GTAC	5 cut(s)	449, 464, 641, 917, 1688
AfiI	CCNNNNNNNGG	3 cut(s)	631, 1850, 1862
AflII	CTTAAG	3 cut(s)	815, 980, 1349
AflIII	ACRYGT	1 cut(s)	1918
AgsI	TTSAA	9 cut(s)	499, 715, 748, 877, 1019, 1138, 1324, 1465, 1637
AjiI	CACGTC	2 cut(s)	1183, 1718
AjnI	CCWGG	1 cut(s)	1053
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AluBI	AGCT	7 cut(s)	237, 802, 814, 950, 1105, 1643, 1814
AluI	AGCT	7 cut(s)	237, 802, 814, 950, 1105, 1643, 1814
Alw26I	GTCTC	2 cut(s)	1064, 1673
AlwI	GGATC	4 cut(s)	937, 1478, 1806, 1879
AoxI	GGCC	6 cut(s)	241, 304, 565, 792, 897, 1853
ApeKI	GCWGC	2 cut(s)	234, 1814
ApoI	RAATTY	2 cut(s)	781, 1457
ArsI	GACNNNNNNTTYG	2 cut(s)	1145, 1177
AscI	GGCGCGCC	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	1616
AspLEI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
AspS9I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
AvaII	GGWCC	2 cut(s)	1754, 1832
BanI	GGYRCC	1 cut(s)	1708
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	2 cut(s)	385, 409
BbvI	GCAGC	2 cut(s)	246, 1801
BccI	CCATC	7 cut(s)	440, 833, 1777, 1780, 1852, 1894, 1906
BceAI	ACGGC	3 cut(s)	359, 552, 674
BciT130I	CCWGG	1 cut(s)	1055
BclI	TGATCA	2 cut(s)	1243, 1518
BcoDI	GTCTC	2 cut(s)	1064, 1673
BfaI	CTAG	3 cut(s)	1209, 1395, 1683
BfoI	RGCGCY	2 cut(s)	181, 196
BfrI	CTTAAG	3 cut(s)	815, 980, 1349
BfuAI	ACCTGC	2 cut(s)	431, 962
Bme1390I	CCNGG	1 cut(s)	1055
Bme18I	GGWCC	2 cut(s)	1754, 1832
BmgBI	CACGTC	2 cut(s)	1183, 1718
BmgT120I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
BmiI	GGNNCC	2 cut(s)	1710, 1777
BmrFI	CCNGG	1 cut(s)	1055
BmsI	GCATC	4 cut(s)	658, 1303, 1333, 1486
BpiI	GAAGAC	2 cut(s)	385, 409
BpuEI	CTTGAG	2 cut(s)	605, 1845
BsaHI	GRCGYC	2 cut(s)	363, 687
BsaJI	CCNNGG	5 cut(s)	375, 451, 690, 900, 1176
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 275, 305, 1681, 1711
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 1850, 1862
Bse118I	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
Bse1I	ACTGG	4 cut(s)	1449, 1500, 1572, 1800
Bse3DI	GCAATG	4 cut(s)	603, 964, 1203, 1540
BseBI	CCWGG	1 cut(s)	1055
BseDI	CCNNGG	5 cut(s)	375, 451, 690, 900, 1176
BseGI	GGATG	4 cut(s)	90, 945, 1233, 1378
BseLI	CCNNNNNNNGG	3 cut(s)	631, 1850, 1862
BseMI	GCAATG	4 cut(s)	603, 964, 1203, 1540
BseMII	CTCAG	4 cut(s)	1059, 1410, 1668, 1796
BseNI	ACTGG	4 cut(s)	1449, 1500, 1572, 1800
BsePI	GCGCGC	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	246, 1801
BseYI	CCCAGC	2 cut(s)	946, 1643
BsgI	GTGCAG	1 cut(s)	1590
Bsh1236I	CGCG	9 cut(s)	224, 256, 258, 269, 330, 348, 382, 406, 453
BshFI	GGCC	6 cut(s)	243, 306, 567, 794, 899, 1855
BshNI	GGYRCC	1 cut(s)	1708
BsiSI	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	631, 1850, 1862
BsmAI	GTCTC	2 cut(s)	1064, 1673
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	6 cut(s)	243, 306, 567, 794, 899, 1855
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
Bsp19I	CCATGG	2 cut(s)	900, 1176
BspANI	GGCC	6 cut(s)	243, 306, 567, 794, 899, 1855
BspCNI	CTCAG	4 cut(s)	1060, 1411, 1669, 1795
BspFNI	CGCG	9 cut(s)	224, 256, 258, 269, 330, 348, 382, 406, 453
BspLI	GGNNCC	2 cut(s)	1710, 1777
BspMI	ACCTGC	2 cut(s)	431, 962
BspPI	GGATC	4 cut(s)	937, 1478, 1806, 1879
BspT107I	GGYRCC	1 cut(s)	1708
BspTI	CTTAAG	3 cut(s)	815, 980, 1349
BsrBI	CCGCTC	3 cut(s)	27, 138, 217
BsrDI	GCAATG	4 cut(s)	603, 964, 1203, 1540
BsrFI	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
BsrI	ACTGG	4 cut(s)	1449, 1500, 1572, 1800
BssAI	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
BssECI	CCNNGG	5 cut(s)	375, 451, 690, 900, 1176
BssHII	GCGCGC	1 cut(s)	380
BssMI	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
BssNAI	GTATAC	1 cut(s)	1624
BssNI	GRCGYC	2 cut(s)	363, 687
BssT1I	CCWWGG	2 cut(s)	900, 1176
Bst1107I	GTATAC	1 cut(s)	1624
Bst2UI	CCWGG	1 cut(s)	1055
Bst4CI	ACNGT	4 cut(s)	415, 557, 1451, 1927
Bst6I	CTCTTC	1 cut(s)	488
BstACI	GRCGYC	2 cut(s)	363, 687
BstAFI	CTTAAG	3 cut(s)	815, 980, 1349
BstC8I	GCNNGC	6 cut(s)	17, 191, 245, 352, 382, 1857
BstDEI	CTNAG	4 cut(s)	1068, 1419, 1677, 1782
BstDSI	CCRYGG	5 cut(s)	375, 451, 690, 900, 1176
BstENI	CCTNNNNNAGG	1 cut(s)	1860
BstF5I	GGATG	4 cut(s)	90, 945, 1233, 1378
BstFNI	CGCG	9 cut(s)	224, 256, 258, 269, 330, 348, 382, 406, 453
BstH2I	RGCGCY	2 cut(s)	181, 196
BstHHI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
BstKTI	GATC	7 cut(s)	945, 1246, 1486, 1521, 1739, 1801, 1874
BstMAI	GTCTC	2 cut(s)	1064, 1673
BstMBI	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
BstNI	CCWGG	1 cut(s)	1055
BstNSI	RCATGY	1 cut(s)	1922
BstSCI	CCNGG	1 cut(s)	1053
BstUI	CGCG	9 cut(s)	224, 256, 258, 269, 330, 348, 382, 406, 453
BstV1I	GCAGC	2 cut(s)	246, 1801
BstV2I	GAAGAC	2 cut(s)	385, 409
BstX2I	RGATCY	1 cut(s)	1483
BstXI	CCANNNNNNTGG	2 cut(s)	862, 1183
BstYI	RGATCY	1 cut(s)	1483
BstZ17I	GTATAC	1 cut(s)	1624
BsuRI	GGCC	6 cut(s)	243, 306, 567, 794, 899, 1855
BtgI	CCRYGG	5 cut(s)	375, 451, 690, 900, 1176
BtgZI	GCGATG	1 cut(s)	421
BtrI	CACGTC	2 cut(s)	1183, 1718
BtsCI	GGATG	4 cut(s)	90, 945, 1233, 1378
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	4 cut(s)	553, 609, 1442, 1607
BveI	ACCTGC	2 cut(s)	431, 962
Cac8I	GCNNGC	6 cut(s)	17, 191, 245, 352, 382, 1857
CfoI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
Cfr10I	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
Cfr13I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
Cfr42I	CCGCGG	1 cut(s)	454
CseI	GACGC	4 cut(s)	230, 371, 479, 695
Csp6I	GTAC	5 cut(s)	448, 463, 640, 916, 1687
CviAII	CATG	7 cut(s)	445, 725, 901, 986, 1005, 1177, 1919
CviQI	GTAC	5 cut(s)	448, 463, 640, 916, 1687
DdeI	CTNAG	4 cut(s)	1068, 1419, 1677, 1782
DpnI	GATC	7 cut(s)	944, 1245, 1485, 1520, 1738, 1800, 1873
DpnII	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
EciI	GGCGGA	3 cut(s)	23, 283, 1668
Eco130I	CCWWGG	2 cut(s)	900, 1176
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	1754, 1832
Eco57I	CTGAAG	1 cut(s)	1631
EcoNI	CCTNNNNNAGG	1 cut(s)	1860
EcoRII	CCWGG	1 cut(s)	1053
EcoT14I	CCWWGG	2 cut(s)	900, 1176
EcoT22I	ATGCAT	1 cut(s)	1318
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	2 cut(s)	900, 1176
FaeI	CATG	7 cut(s)	448, 728, 904, 989, 1008, 1180, 1922
FalI	AAGNNNNNCTT	4 cut(s)	963, 995, 1530, 1562
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	7 cut(s)	444, 724, 900, 985, 1004, 1176, 1918
FauI	CCCGC	7 cut(s)	143, 222, 252, 281, 1050, 1180, 1734
FbaI	TGATCA	2 cut(s)	1243, 1518
FblI	GTMKAC	1 cut(s)	1623
FokI	GGATG	4 cut(s)	77, 952, 1240, 1385
FriOI	GRGCYC	1 cut(s)	213
FspBI	CTAG	3 cut(s)	1209, 1395, 1683
GlaI	GCGC	9 cut(s)	179, 194, 225, 257, 270, 349, 381, 383, 407
GsaI	CCCAGC	2 cut(s)	950, 1647
HaeII	RGCGCY	2 cut(s)	181, 196
HaeIII	GGCC	6 cut(s)	243, 306, 567, 794, 899, 1855
HapII	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
HgaI	GACGC	4 cut(s)	230, 371, 479, 695
HhaI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
Hin1I	GRCGYC	2 cut(s)	363, 687
Hin1II	CATG	7 cut(s)	448, 728, 904, 989, 1008, 1180, 1922
Hin6I	GCGC	9 cut(s)	178, 193, 224, 256, 269, 348, 380, 382, 406
HinP1I	GCGC	9 cut(s)	178, 193, 224, 256, 269, 348, 380, 382, 406
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	5 cut(s)	284, 734, 905, 1303, 1763
HpaII	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
Hpy166II	GTNNAC	5 cut(s)	694, 1416, 1544, 1624, 1689
Hpy188I	TCNGA	3 cut(s)	1069, 1308, 1785
Hpy188III	TCNNGA	4 cut(s)	584, 1138, 1773, 1869
Hpy8I	GTNNAC	5 cut(s)	694, 1416, 1544, 1624, 1689
Hpy99I	CGWCG	5 cut(s)	224, 234, 305, 365, 812
HpyAV	CCTTC	6 cut(s)	151, 886, 991, 1135, 1144, 1532
HpyCH4III	ACNGT	4 cut(s)	415, 557, 1451, 1927
HpyCH4IV	ACGT	4 cut(s)	638, 1182, 1287, 1717
HpyCH4V	TGCA	6 cut(s)	426, 957, 1316, 1454, 1533, 1607
HpyF3I	CTNAG	4 cut(s)	1068, 1419, 1677, 1782
HpySE526I	ACGT	4 cut(s)	638, 1182, 1287, 1717
Hsp92I	GRCGYC	2 cut(s)	363, 687
Hsp92II	CATG	7 cut(s)	448, 728, 904, 989, 1008, 1180, 1922
HspAI	GCGC	9 cut(s)	178, 193, 224, 256, 269, 348, 380, 382, 406
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	2 cut(s)	1243, 1518
KspI	CCGCGG	1 cut(s)	454
Kzo9I	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
LmnI	GCTCC	4 cut(s)	24, 143, 231, 242
Lsp1109I	GCAGC	2 cut(s)	246, 1801
LweI	GCATC	4 cut(s)	658, 1303, 1333, 1486
MaeI	CTAG	3 cut(s)	1209, 1395, 1683
MaeII	ACGT	4 cut(s)	638, 1182, 1287, 1717
MaeIII	GTNAC	6 cut(s)	3, 634, 683, 1288, 1403, 1921
MalI	GATC	7 cut(s)	944, 1245, 1485, 1520, 1738, 1800, 1873
MbiI	CCGCTC	3 cut(s)	27, 138, 217
MboI	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
MboII	GAAGA	7 cut(s)	173, 385, 409, 475, 865, 1006, 1477
MflI	RGATCY	1 cut(s)	1483
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	7 cut(s)	538, 781, 1048, 1063, 1259, 1457, 1616
MlyI	GAGTC	2 cut(s)	278, 1297
MmeI	TCCRAC	2 cut(s)	423, 531
Mph1103I	ATGCAT	1 cut(s)	1318
MreI	CGCCGGCG	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	1616
MslI	CAYNNNNRTG	3 cut(s)	558, 860, 1181
MspA1I	CMGCKG	2 cut(s)	453, 1814
MspCI	CTTAAG	3 cut(s)	815, 980, 1349
MspI	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
MspR9I	CCNGG	1 cut(s)	1055
MvaI	CCWGG	1 cut(s)	1055
MvnI	CGCG	9 cut(s)	224, 256, 258, 269, 330, 348, 382, 406, 453
NaeI	GCCGGC	1 cut(s)	352
NcoI	CCATGG	2 cut(s)	900, 1176
NdeII	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	7 cut(s)	448, 728, 904, 989, 1008, 1180, 1922
NlaIV	GGNNCC	2 cut(s)	1710, 1777
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	3 cut(s)	3, 634, 683
NsiI	ATGCAT	1 cut(s)	1318
NspI	RCATGY	1 cut(s)	1922
PalAI	GGCGCGCC	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	431
PauI	GCGCGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	1918
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PdiI	GCCGGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	1616
PfeI	GAWTC	3 cut(s)	734, 905, 1763
PflMI	CCANNNNNTGG	1 cut(s)	1850
PleI	GAGTC	2 cut(s)	278, 1297
PpsI	GAGTC	2 cut(s)	278, 1297
PscI	ACATGT	1 cut(s)	1918
PsiI	TTATAA	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	1053
PspFI	CCCAGC	2 cut(s)	946, 1643
PspGI	CCWGG	1 cut(s)	1053
PspN4I	GGNNCC	2 cut(s)	1710, 1777
PspPI	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
PsuI	RGATCY	1 cut(s)	1483
PteI	GCGCGC	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	1814
RsaI	GTAC	5 cut(s)	449, 464, 641, 917, 1688
RsaNI	GTAC	5 cut(s)	448, 463, 640, 916, 1687
RseI	CAYNNNNRTG	3 cut(s)	558, 860, 1181
SacII	CCGCGG	1 cut(s)	454
Sau3AI	GATC	7 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871
Sau96I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
SchI	GAGTC	2 cut(s)	278, 1297
ScrFI	CCNGG	1 cut(s)	1055
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	658, 1303, 1333, 1486
Sfr303I	CCGCGG	1 cut(s)	454
SgrAI	CRCCGGYG	2 cut(s)	350, 631
SgrBI	CCGCGG	1 cut(s)	454
SgsI	GGCGCGCC	1 cut(s)	380
SinI	GGWCC	2 cut(s)	1754, 1832
SmiMI	CAYNNNNRTG	3 cut(s)	558, 860, 1181
SmlI	CTYRAG	5 cut(s)	584, 815, 980, 1349, 1860
SmoI	CTYRAG	5 cut(s)	584, 815, 980, 1349, 1860
Sse9I	AATT	7 cut(s)	538, 781, 1048, 1063, 1259, 1457, 1616
SspMI	CTAG	3 cut(s)	1209, 1395, 1683
StyD4I	CCNGG	1 cut(s)	1053
StyI	CCWWGG	2 cut(s)	900, 1176
TaaI	ACNGT	4 cut(s)	415, 557, 1451, 1927
TaiI	ACGT	4 cut(s)	641, 1185, 1290, 1720
TaqI	TCGA	5 cut(s)	219, 287, 360, 573, 807
TasI	AATT	7 cut(s)	538, 781, 1048, 1063, 1259, 1457, 1616
TfiI	GAWTC	3 cut(s)	734, 905, 1763
TscAI	CASTG	4 cut(s)	560, 616, 1449, 1614
TseFI	GTSAC	3 cut(s)	3, 634, 683
TseI	GCWGC	2 cut(s)	234, 1814
Tsp45I	GTSAC	3 cut(s)	3, 634, 683
TspDTI	ATGAA	2 cut(s)	897, 1551
TspGWI	ACGGA	2 cut(s)	218, 379
TspRI	CASTG	4 cut(s)	560, 616, 1449, 1614
Van91I	CCANNNNNTGG	1 cut(s)	1850
Vha464I	CTTAAG	3 cut(s)	815, 980, 1349
VpaK11BI	GGWCC	2 cut(s)	1754, 1832
XagI	CCTNNNNNAGG	1 cut(s)	1860
XapI	RAATTY	2 cut(s)	781, 1457
XceI	RCATGY	1 cut(s)	1922
XmiI	GTMKAC	1 cut(s)	1623
XmnI	GAANNNNTTC	1 cut(s)	1616
XspI	CTAG	3 cut(s)	1209, 1395, 1683
Zsp2I	ATGCAT	1 cut(s)	1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.