Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Forward (+)

20875341 .. 20877878

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGTCATTCTACCGCCTGCTCCTCCGCTCTGTCCGCCGCCCTTCTACCCCAACAACCCTACCCCTAACCCAATCCCTCACCTACCTCCACCTCCACAGTTCTAACCCAAACATTCCTCTCCACCTCACCACCCCCACCCGCACCTTCGCTTTCTCCTCCCCCGAAGAAGCCGCCGCTGAGCGCAGACGTCGCAAGCGCCGCCTCCGCATCGAGCCCCCGCACAACGCCCTCCGTCGGGACTCACGCCCCCCACCCCCACGGGACCCGAACGCCCCCCGCCTACCTGATACCACCTCCGCCCTCGTCGGCCCCCGCCTCAACCTCCACAACCGCGTCCAGTCGCTCATCCGAGCCGGAGACTTGGACGCCGCGTCCGAGGTTGCGCGCCACTCGGTTTTCTCCAACACTCGCCCCACCGTCTTCACCTGCAACGCCATTGTGGCTGCAATGTATCGCGCCAAGAGGTACAATGACGCTATTGCCCTTTTCCACTTCTTCTTCAATCAATCAAACATTGTTCCTAACATTGTATCTTATAATAATTTGATTAATACTCATTGCGATGAGGGCCGTGTCGATGTGGGACTGGAGATTTATCGGCATATAATTGCAAATTGCCCCTACAGTCCCTCGCCAGTGACATACCGGCATTTGACTAAAGGGTTGGTTGATGCTGGGAGGATAGGTGAGGGTGTGGACTTGTTGAGGGAGATGTTGAATAAGGGCCACGGAGCGGATTCTTTGGTTTTTAATAATTTGATTAAGGGATTCTTACATTTGGAGAATATGGATAAGGCTGTTGAGCTGTTTGATGAGCTTAAAGAGAGATGTTTGGTTTATGATGGGGTTGTGAATTCGACCTTTATGGATTGGTTTTTCAACCAGGGGAAAGAGAAAGAGGCGATGGAGTCATACAAGTCCTTGCTTGATAGGCAGTTTAGGATGGTCCCGGCAACCTGTAATGTTCTCTTGGAGGTACTGCTTAAGCATGGGAAGAAGAAGGAAGCCTGGGATTTGATCGATCAGATGTTGGATAATCACACCCCGCCAAATTTCCAGGCTGTGAATTCGGAAACATTTAACATTATGGTTAACGAGTGTTTTAAGCTTGGAAAGTATGATGAGGCAATTGCCACCTTTAAGAAGGTGGGGACAAAGGTGAATTCAAAGCCATTTTCTATGGACGTTGCGGGGTATAACAATATCATTGCGAGGTATTGTGAGAATGAGATGTTACCGGAGGCTGAGACACTGTTTGCAGAATTGTCCTCAAAGTCATTGACCCCGGATGTCACGACTCATAGGACTCTGATTGATGCATATTTGAAAGTAGAGAGTATAGATGATGCTCTTAAGATATTTAGCAGGATGGTGGAGGTTGGTCTGCGAGTGGTTGCTAGTCTTGGTAAAAGGGTGTTCGATGAATTGATTAAGAACGGGAAGGCAGTAGACTGTGCACAGATTTTGAAGAAAATGGGAGAAAAAGATCCAAAACCAGATGCCAGTTTTTATGATGCTGTGATCAAGGGGGTTTGCAATGAAGGTGTGCTTGATACAGGCTGTGATTTACTGGAAGAGATGGTGAGATATGGCATTGGTGTTCCTCCAGAATTGCAGCAATTTGTAAATGAGGTTTTTGGAGAAGCTGGGCGTGGCGAAGAGATTCAGAGAGTATTAAATGCGAATAGGTGGGGATACCGATCACTACCTAGAGAGGCACCACCTCAGCAATTCCAACCAAGATCGCCTCAAATGGCAGGACAATATCGTCCATCGTCAGCACCGCCCCAAATGACTGGACACTGGAACCAATCAGCCACCTTCTGGACTCAATCAGCCACCATCTGGACCCTATCAGCCACCATCTGGAACCTATCACTATCAGCCACCATCTGGAACCAATCAGCCGCCTTCTGGACCTTATCAGCCACCATCTGGAACCTATCACAGCCACCATCCGGAACCAATCAGCCGCCTTCTGGACCCTATCAGCCACCATCCGGAACCTATCAGCCACCATCCGGAACCTATCAGCCACCATCTGGAACCAATCAGCTGCCTTCTGGACCCTATCAAATGACTGGAACTTACCAATCACCACCAAGACCTCCACATATGGCTACAAGCCAGCACCCCACAGCTCAATCCCCTCAAATGGCTGGACAATATTACACTCCATCAAGAGCCCCCCAAACGGCAGTACCACACCACCCTCCGTCCAGACTTCCTCATGTGACAGCTTCGTACACGCCATCTGAAGATTTTCAGAGCTTAGGACCACAACACCCTCTGTCAGGAGCTGCTCAAGGGACAGGATCTGACCAATCATCGTCAGAACCCGCTCAAATTACAGAACAGGTAGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

791

Amino Acids

88.06

Weight (kDa)

8.19

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	395 - 442	1.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	434
AasI	GACNNNNNNGTC	1 cut(s)	1767
AatII	GACGTC	1 cut(s)	190
Acc36I	ACCTGC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	1717
AccB7I	CCANNNNNTGG	6 cut(s)	1824, 1845, 1866, 1893, 1935, 2042
AccBSI	CCGCTC	3 cut(s)	27, 734, 2342
AccI	GTMKAC	1 cut(s)	1449
AccII	CGCG	4 cut(s)	333, 371, 385, 456
AccIII	TCCGGA	3 cut(s)	1958, 2000, 2021
AclWI	GGATC	2 cut(s)	1481, 2323
AcsI	RAATTY	4 cut(s)	853, 1051, 1066, 1162
AcuI	CTGAAG	1 cut(s)	2277
AcyI	GRCGYC	2 cut(s)	187, 366
AfaI	GTAC	4 cut(s)	467, 978, 2202, 2246
AflII	CTTAAG	2 cut(s)	983, 1352
AgsI	TTSAA	6 cut(s)	502, 718, 880, 1167, 1327, 1468
AhdI	GACNNNNNGTC	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	882, 1007, 1056
Alw21I	GWGCWC	1 cut(s)	1459
Alw26I	GTCTC	2 cut(s)	351, 1241
Alw44I	GTGCAC	1 cut(s)	1455
AlwI	GGATC	2 cut(s)	1481, 2323
AlwNI	CAGNNNCTG	2 cut(s)	2300, 2318
Aor13HI	TCCGGA	3 cut(s)	1958, 2000, 2021
AoxI	GGCC	3 cut(s)	307, 568, 724
ApaLI	GTGCAC	1 cut(s)	1455
ApeKI	GCWGC	6 cut(s)	443, 1615, 2056, 2300, 2363, 2366
ApoI	RAATTY	4 cut(s)	853, 1051, 1066, 1162
AseI	ATTAAT	1 cut(s)	549
Asp700I	GAANNNNTTC	2 cut(s)	1662, 2262
AspLEI	GCGC	5 cut(s)	183, 198, 385, 387, 458
AsuC2I	CCSGG	2 cut(s)	950, 1286
AsuHPI	GGTGA	7 cut(s)	70, 118, 415, 698, 1171, 1594, 2088
AvaII	GGWCC	7 cut(s)	262, 946, 1848, 1917, 1982, 2066, 2276
BaeGI	GKGCMC	1 cut(s)	1459
BaeI	ACNNNNGTAYC	2 cut(s)	2184, 2217
BanI	GGYRCC	1 cut(s)	1717
BanII	GRGCYC	2 cut(s)	216, 2188
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	1459
BbvCI	CCTCAGC	1 cut(s)	1725
BbvI	GCAGC	5 cut(s)	430, 1627, 2043, 2287, 2353
BceAI	ACGGC	2 cut(s)	555, 2211
BciT130I	CCWGG	3 cut(s)	884, 1009, 1058
BciVI	GTATCC	1 cut(s)	1688
BclI	TGATCA	1 cut(s)	1521
BcnI	CCSGG	2 cut(s)	950, 1286
BcoDI	GTCTC	2 cut(s)	351, 1241
BfaI	CTAG	2 cut(s)	1398, 1710
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	1 cut(s)	199
BfrI	CTTAAG	2 cut(s)	983, 1352
BfuAI	ACCTGC	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	1688
BglI	GCCNNNNNGGC	1 cut(s)	440
BlpI	GCTNAGC	1 cut(s)	177
Bme1390I	CCNGG	5 cut(s)	884, 950, 1009, 1058, 1286
Bme18I	GGWCC	7 cut(s)	262, 946, 1848, 1917, 1982, 2066, 2276
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmrFI	CCNGG	5 cut(s)	884, 950, 1009, 1058, 1286
BmsI	GCATC	6 cut(s)	216, 661, 1306, 1336, 1489, 1504
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	2 cut(s)	608, 1590
Bpu10I	CCTNAGC	2 cut(s)	1725, 2272
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	2289
BpuMI	CCSGG	2 cut(s)	950, 1286
Bsa29I	ATCGAT	1 cut(s)	1020
BsaBI	GATNNNNATC	1 cut(s)	1699
BsaHI	GRCGYC	2 cut(s)	187, 366
BsaJI	CCNNGG	6 cut(s)	257, 375, 727, 883, 1008, 1284
BsaWI	WCCGGW	4 cut(s)	1237, 1958, 2000, 2021
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bse118I	RCCGGY	1 cut(s)	645
Bse1I	ACTGG	8 cut(s)	337, 591, 635, 1503, 1575, 1801, 1808, 2086
Bse3DI	GCAATG	4 cut(s)	453, 556, 1206, 1543
Bse8I	GATNNNNATC	1 cut(s)	1699
BseAI	TCCGGA	3 cut(s)	1958, 2000, 2021
BseBI	CCWGG	3 cut(s)	884, 1009, 1058
BseCI	ATCGAT	1 cut(s)	1020
BseDI	CCNNGG	6 cut(s)	257, 375, 727, 883, 1008, 1284
BseGI	GGATG	7 cut(s)	345, 948, 1294, 1374, 1955, 1997, 2018
BseJI	GATNNNNATC	1 cut(s)	1699
BseMI	GCAATG	4 cut(s)	453, 556, 1206, 1543
BseMII	CTCAG	3 cut(s)	168, 1236, 1739
BseNI	ACTGG	8 cut(s)	337, 591, 635, 1503, 1575, 1801, 1808, 2086
BsePI	GCGCGC	1 cut(s)	383
BseRI	GAGGAG	2 cut(s)	11, 145
BseSI	GKGCMC	1 cut(s)	1459
BseXI	GCAGC	5 cut(s)	430, 1627, 2043, 2287, 2353
BseYI	CCCAGC	2 cut(s)	674, 1646
Bsh1236I	CGCG	4 cut(s)	333, 371, 385, 456
BshFI	GGCC	3 cut(s)	309, 570, 726
BshNI	GGYRCC	1 cut(s)	1717
BshVI	ATCGAT	1 cut(s)	1020
BsiHKAI	GWGCWC	1 cut(s)	1459
BsiSI	CCGG	8 cut(s)	354, 646, 950, 1238, 1286, 1959, 2001, 2022
BslFI	GGGAC	7 cut(s)	251, 275, 597, 612, 932, 1165, 2323
BsmAI	GTCTC	2 cut(s)	351, 1241
BsmFI	GGGAC	7 cut(s)	251, 275, 597, 612, 932, 1165, 2323
BsnI	GGCC	3 cut(s)	309, 570, 726
Bsp1286I	GDGCHC	3 cut(s)	216, 1459, 2188
Bsp13I	TCCGGA	3 cut(s)	1958, 2000, 2021
Bsp143I	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
Bsp1720I	GCTNAGC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	309, 570, 726
BspCNI	CTCAG	3 cut(s)	169, 1237, 1738
BspDI	ATCGAT	1 cut(s)	1020
BspEI	TCCGGA	3 cut(s)	1958, 2000, 2021
BspFNI	CGCG	4 cut(s)	333, 371, 385, 456
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	1481, 2323
BspT107I	GGYRCC	1 cut(s)	1717
BspTI	CTTAAG	2 cut(s)	983, 1352
BsrBI	CCGCTC	3 cut(s)	27, 734, 2342
BsrDI	GCAATG	4 cut(s)	453, 556, 1206, 1543
BsrFI	RCCGGY	1 cut(s)	645
BsrI	ACTGG	8 cut(s)	337, 591, 635, 1503, 1575, 1801, 1808, 2086
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	6 cut(s)	257, 375, 727, 883, 1008, 1284
BssHII	GCGCGC	1 cut(s)	383
BssMI	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
BssNI	GRCGYC	2 cut(s)	187, 366
Bst2UI	CCWGG	3 cut(s)	884, 1009, 1058
Bst4CI	ACNGT	5 cut(s)	98, 418, 626, 1254, 1454
Bst6I	CTCTTC	2 cut(s)	1569, 1653
BstACI	GRCGYC	2 cut(s)	187, 366
BstAFI	CTTAAG	2 cut(s)	983, 1352
BstC8I	GCNNGC	4 cut(s)	17, 194, 385, 2129
BstDEI	CTNAG	4 cut(s)	177, 1245, 1725, 2272
BstDSI	CCRYGG	2 cut(s)	257, 727
BstENI	CCTNNNNNAGG	1 cut(s)	2292
BstF5I	GGATG	7 cut(s)	345, 948, 1294, 1374, 1955, 1997, 2018
BstFNI	CGCG	4 cut(s)	333, 371, 385, 456
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	5 cut(s)	183, 198, 385, 387, 458
BstKTI	GATC	7 cut(s)	1020, 1024, 1489, 1524, 1703, 1745, 2318
BstMAI	GTCTC	2 cut(s)	351, 1241
BstMBI	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 189, 198, 204, 440, 567, 931
BstNI	CCWGG	3 cut(s)	884, 1009, 1058
BstSCI	CCNGG	5 cut(s)	882, 948, 1007, 1056, 1284
BstSFI	CTRYAG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	1459
BstUI	CGCG	4 cut(s)	333, 371, 385, 456
BstV1I	GCAGC	5 cut(s)	430, 1627, 2043, 2287, 2353
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	1486, 2315
BstXI	CCANNNNNNTGG	1 cut(s)	1796
BstYI	RGATCY	2 cut(s)	1486, 2315
Bsu15I	ATCGAT	1 cut(s)	1020
BsuI	GTATCC	1 cut(s)	1688
BsuRI	GGCC	3 cut(s)	309, 570, 726
BsuTUI	ATCGAT	1 cut(s)	1020
BtgI	CCRYGG	2 cut(s)	257, 727
BtgZI	GCGATG	2 cut(s)	576, 917
BtsCI	GGATG	7 cut(s)	345, 948, 1294, 1374, 1955, 1997, 2018
BtsIMutI	CAGTG	3 cut(s)	642, 1250, 1801
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	4 cut(s)	17, 194, 385, 2129
CaiI	CAGNNNCTG	2 cut(s)	2300, 2318
CfoI	GCGC	5 cut(s)	183, 198, 385, 387, 458
Cfr10I	RCCGGY	1 cut(s)	645
ClaI	ATCGAT	1 cut(s)	1020
CseI	GACGC	4 cut(s)	322, 360, 374, 482
Csp6I	GTAC	4 cut(s)	466, 977, 2201, 2245
CviAII	CATG	2 cut(s)	989, 2231
CviQI	GTAC	4 cut(s)	466, 977, 2201, 2245
DdeI	CTNAG	4 cut(s)	177, 1245, 1725, 2272
DpnI	GATC	7 cut(s)	1019, 1023, 1488, 1523, 1702, 1744, 2317
DpnII	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
DrdI	GACNNNNNNGTC	1 cut(s)	1767
DriI	GACNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	1767
Eam1104I	CTCTTC	2 cut(s)	1569, 1653
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	2 cut(s)	1569, 1653
EciI	GGCGGA	2 cut(s)	23, 286
Eco24I	GRGCYC	2 cut(s)	216, 2188
Eco47I	GGWCC	7 cut(s)	262, 946, 1848, 1917, 1982, 2066, 2276
Eco57I	CTGAAG	1 cut(s)	2277
EcoNI	CCTNNNNNAGG	1 cut(s)	2292
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRI	GAATTC	3 cut(s)	853, 1066, 1162
EcoRII	CCWGG	3 cut(s)	882, 1007, 1056
EcoT22I	ATGCAT	1 cut(s)	1321
EcoT38I	GRGCYC	2 cut(s)	216, 2188
FaeI	CATG	2 cut(s)	992, 2234
FalI	AAGNNNNNCTT	4 cut(s)	755, 787, 1533, 1565
FaqI	GGGAC	7 cut(s)	251, 275, 597, 612, 932, 1165, 2323
FatI	CATG	2 cut(s)	988, 2230
FauI	CCCGC	7 cut(s)	146, 225, 284, 320, 1053, 1183, 2347
FauNDI	CATATG	1 cut(s)	2115
FbaI	TGATCA	1 cut(s)	1521
FblI	GTMKAC	1 cut(s)	1449
FokI	GGATG	7 cut(s)	332, 955, 1301, 1381, 1942, 1984, 2005
FriOI	GRGCYC	2 cut(s)	216, 2188
FspBI	CTAG	2 cut(s)	1398, 1710
GlaI	GCGC	5 cut(s)	182, 197, 384, 386, 457
GsaI	CCCAGC	2 cut(s)	678, 1650
GsuI	CTGGAG	2 cut(s)	608, 1590
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	309, 570, 726
HapII	CCGG	8 cut(s)	354, 646, 950, 1238, 1286, 1959, 2001, 2022
HgaI	GACGC	4 cut(s)	322, 360, 374, 482
HhaI	GCGC	5 cut(s)	183, 198, 385, 387, 458
Hin1I	GRCGYC	2 cut(s)	187, 366
Hin1II	CATG	2 cut(s)	992, 2234
Hin6I	GCGC	5 cut(s)	181, 196, 383, 385, 456
HinP1I	GCGC	5 cut(s)	181, 196, 383, 385, 456
HincII	GTYRAC	1 cut(s)	1093
HindII	GTYRAC	1 cut(s)	1093
HindIII	AAGCTT	1 cut(s)	1106
HinfI	GANTC	8 cut(s)	239, 737, 768, 908, 1297, 1306, 1663, 1828
HpaI	GTTAAC	1 cut(s)	1093
HpaII	CCGG	8 cut(s)	354, 646, 950, 1238, 1286, 1959, 2001, 2022
HphI	GGTGA	7 cut(s)	70, 118, 415, 698, 1171, 1594, 2088
Hpy166II	GTNNAC	5 cut(s)	697, 1093, 1450, 1457, 2247
Hpy8I	GTNNAC	5 cut(s)	697, 1093, 1450, 1457, 2247
Hpy99I	CGWCG	3 cut(s)	192, 237, 308
HpyCH4III	ACNGT	5 cut(s)	98, 418, 626, 1254, 1454
HpyCH4IV	ACGT	2 cut(s)	187, 1185
HpyCH4V	TGCA	8 cut(s)	429, 446, 611, 1259, 1319, 1457, 1536, 1615
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 189, 198, 204, 440, 567, 931
HpyF3I	CTNAG	4 cut(s)	177, 1245, 1725, 2272
HpySE526I	ACGT	2 cut(s)	187, 1185
Hsp92I	GRCGYC	2 cut(s)	187, 366
Hsp92II	CATG	2 cut(s)	992, 2234
HspAI	GCGC	5 cut(s)	181, 196, 383, 385, 456
KflI	GGGWCCC	1 cut(s)	262
Kpn2I	TCCGGA	3 cut(s)	1958, 2000, 2021
Ksp22I	TGATCA	1 cut(s)	1521
KspAI	GTTAAC	1 cut(s)	1093
Kzo9I	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
LmnI	GCTCC	3 cut(s)	24, 731, 2297
Lsp1109I	GCAGC	5 cut(s)	430, 1627, 2043, 2287, 2353
LweI	GCATC	6 cut(s)	216, 661, 1306, 1336, 1489, 1504
MaeI	CTAG	2 cut(s)	1398, 1710
MaeII	ACGT	2 cut(s)	187, 1185
MaeIII	GTNAC	4 cut(s)	637, 1233, 1291, 2233
MalI	GATC	7 cut(s)	1019, 1023, 1488, 1523, 1702, 1744, 2317
MbiI	CCGCTC	3 cut(s)	27, 734, 2342
MboI	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
MfeI	CAATTG	1 cut(s)	1128
MflI	RGATCY	2 cut(s)	1486, 2315
MhlI	GDGCHC	3 cut(s)	216, 1459, 2188
MlyI	GAGTC	5 cut(s)	233, 917, 1291, 1300, 1822
MmeI	TCCRAC	3 cut(s)	426, 1011, 1759
Mph1103I	ATGCAT	1 cut(s)	1321
MroI	TCCGGA	3 cut(s)	1958, 2000, 2021
MroXI	GAANNNNTTC	2 cut(s)	1662, 2262
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	3 cut(s)	176, 2056, 2366
MspCI	CTTAAG	2 cut(s)	983, 1352
MspI	CCGG	8 cut(s)	354, 646, 950, 1238, 1286, 1959, 2001, 2022
MspR9I	CCNGG	5 cut(s)	884, 950, 1009, 1058, 1286
MunI	CAATTG	1 cut(s)	1128
MvaI	CCWGG	3 cut(s)	884, 1009, 1058
MvnI	CGCG	4 cut(s)	333, 371, 385, 456
MwoI	GCNNNNNNNGC	7 cut(s)	33, 189, 198, 204, 440, 567, 931
NciI	CCSGG	2 cut(s)	950, 1286
NdeI	CATATG	1 cut(s)	2115
NdeII	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
NlaIII	CATG	2 cut(s)	992, 2234
NmuCI	GTSAC	3 cut(s)	637, 1291, 2233
NsiI	ATGCAT	1 cut(s)	1321
PaqCI	CACCTGC	1 cut(s)	434
PauI	GCGCGC	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdmI	GAANNNNTTC	2 cut(s)	1662, 2262
PfeI	GAWTC	3 cut(s)	737, 768, 1663
PflMI	CCANNNNNTGG	6 cut(s)	1824, 1845, 1866, 1893, 1935, 2042
PleI	GAGTC	5 cut(s)	233, 916, 1291, 1300, 1822
PpsI	GAGTC	5 cut(s)	233, 916, 1291, 1300, 1822
PpuMI	RGGWCCY	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	882, 1007, 1056
PspFI	CCCAGC	2 cut(s)	674, 1646
PspGI	CCWGG	3 cut(s)	882, 1007, 1056
PspPPI	RGGWCCY	1 cut(s)	262
PstNI	CAGNNNCTG	2 cut(s)	2300, 2318
PsuI	RGATCY	2 cut(s)	1486, 2315
PteI	GCGCGC	1 cut(s)	383
PvuII	CAGCTG	2 cut(s)	2056, 2366
RsaI	GTAC	4 cut(s)	467, 978, 2202, 2246
RsaNI	GTAC	4 cut(s)	466, 977, 2201, 2245
RseI	CAYNNNNRTG	1 cut(s)	561
Sau3AI	GATC	7 cut(s)	1017, 1021, 1486, 1521, 1700, 1742, 2315
SchI	GAGTC	5 cut(s)	233, 917, 1291, 1300, 1822
ScrFI	CCNGG	5 cut(s)	884, 950, 1009, 1058, 1286
SduI	GDGCHC	3 cut(s)	216, 1459, 2188
SfaNI	GCATC	6 cut(s)	216, 661, 1306, 1336, 1489, 1504
SfcI	CTRYAG	1 cut(s)	622
SinI	GGWCC	7 cut(s)	262, 946, 1848, 1917, 1982, 2066, 2276
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	3 cut(s)	983, 1352, 2304
SmoI	CTYRAG	3 cut(s)	983, 1352, 2304
SspI	AATATT	1 cut(s)	2168
SspMI	CTAG	2 cut(s)	1398, 1710
StyD4I	CCNGG	5 cut(s)	882, 948, 1007, 1056, 1284
TaaI	ACNGT	5 cut(s)	98, 418, 626, 1254, 1454
TaiI	ACGT	2 cut(s)	190, 1188
TaqI	TCGA	5 cut(s)	210, 576, 857, 1020, 1419
TauI	GCSGC	7 cut(s)	39, 173, 176, 201, 371, 1910, 1975
TfiI	GAWTC	3 cut(s)	737, 768, 1663
TscAI	CASTG	3 cut(s)	642, 1257, 1808
TseFI	GTSAC	3 cut(s)	637, 1291, 2233
TseI	GCWGC	6 cut(s)	443, 1615, 2056, 2300, 2363, 2366
Tsp45I	GTSAC	3 cut(s)	637, 1291, 2233
TspDTI	ATGAA	2 cut(s)	1437, 1554
TspGWI	ACGGA	3 cut(s)	221, 744, 2205
TspRI	CASTG	3 cut(s)	642, 1257, 1808
Van91I	CCANNNNNTGG	6 cut(s)	1824, 1845, 1866, 1893, 1935, 2042
Vha464I	CTTAAG	2 cut(s)	983, 1352
VneI	GTGCAC	1 cut(s)	1455
VpaK11BI	GGWCC	7 cut(s)	262, 946, 1848, 1917, 1982, 2066, 2276
VspI	ATTAAT	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	2292
XapI	RAATTY	4 cut(s)	853, 1051, 1066, 1162
XmiI	GTMKAC	1 cut(s)	1449
XmnI	GAANNNNTTC	2 cut(s)	1662, 2262
XspI	CTAG	2 cut(s)	1398, 1710
ZraI	GACGTC	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.