Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Forward (+)

39738322 .. 39740879

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG349900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGTCACTCTACCGTCTGCTCCTCCGCTCTCTCCGCCGCCCAACCACCACCCCACAACCCATAACCCAATCCCAATCCCTAACCTCCCTCACCCTCCAAAACCCCATCTCCAATCCTCACTCTCTCACCGCCACCCGCTCCTTCGCCTATTCCACCGCCGAAGAAGCCGCCGCCGAGCGCCGCCGCCGCAAGCGCCGCCTCCGCATAGAGCCCCCGCTCGACGCGCTCCGTCGCGGCTCCGGCCCGCCGCCTCCGCGCGACCCCAACGCGCCCCGTCTCCCCGACTCGACCTCCGCCCTCGTCGGCCCTCGCCTCAACCTCCACAACCGCGTTCAGTCCCTCATACGCGCCGGCGACCTCGACGCCGCCTCTGCCGTGGCGCGCCACTCCGTCTTCTCCAACACGCGCCCCACCGTCTTCACCTGCAATGCCATCATCGCGGCCATGTACCGCGGCAAGAGGTACAATGACGCTATTGCCCTCTTCCACTTCTTTTTCAACCAATCCAACATTGTTCCCAACATTGTTTCTTACAATAATTTGATTAACACTCACTGTGATGAGGGCCGTGTCGATGTGGGTCTTGAGATTTACCGGCATATCATTGCCACTGCCCCTTTTAGTCCCTCGCCGGTGACGTACCGGCATTTGACTAAAGGGTTGATTGATGCCGGTAGGATAGGTGACGCAGTGGACTTGTTGAGGGAGATGTTGAATAAGGGGCATGGTGCTGATTCTTTGGTTTTCAATAACTTGATTAAAGGGTTCTTGGATTTGGAGAATTTGGACAAGGCCAATGAGCTTTTCGACGAGCTTAAGGAGAGGTGTTTGGTGTATGATGGGGTTGTCAATGCCACCTTTATGGATTGGTTCTTCAATAAGGGGAAAGAGAAGGAGGCCATGGATTCATACAGGTACTTGCTTGATAGGCAGTTTAGGATGATCCCAGCTACCTGCAATGTTCTCTTGGAAGTGTTGCTTAAGCATGGCAAGAAGAAGGAGGCATGGGCTTTGTTTGAACAAATGCTGGATAATCACACACCGCCCAATTTCCAGGCAGTTAATTCCGAGACTTTTAATATAATGGTCAATGAGTGTTTTAAGCTTGGCAAGTTTGGTGAGGCGTTTGACACCTTCAAGAAGGTGGGAACAAATGTGAAGTCAAAGCCTTTTTCCATGGACGTGGCGGGGTATAATAATATCATTGCTAGGTATTGTGAAGTTGGGATGTTATCGGAGGCTGATCAACTATTTACAGAATTGTCTTCAAAGTCGCTGACCCCAGACGTAACAACACATAAGACTCTGATTGATGCATATTTGAATGTAGAGAGGATAGATGATGCTCTTAAGATATTTAACAGAATGGTGGATGTTGGGTTGCGAGTGGTTGCTAGTTTTGGTAACAGGGTCTTTACTGAGTTGATTAAGAATGGGAAAGCACTAGACTGTGCAAAAATTTTGAAGAAAATGGGAGAGAAAGATCCTAAACCAGATGCCAGTTGCTATGATGTTGTGATCATGGGGCTTTGCAATGAAGGTGAACTTGACCCAAGCCTTGATTTACTGACAGAAATGGTGAGATATGGCATTGGTGTTCCTCCTGCACTGAAGCAATTCGTACATGAGGTTTTTGAAAAAGCTGGGCGTGGCGGACAGATTGAGAGAACATTAACTGAGACTAGGTACACACCGCCTCCTAGAATGGCACAACCACGGCAATTCCCACCCATAAGATCACCTCAAATGGCAGGACCACAGGAATCACAATCAGGAACCTCTCAGATGGCAGGACTGGATCACCCATCATCAGCTTCCTCCCAGATGGCTGGACCATATCAGCCATCATCTGGACCTGCTCAAGGGTCTGGATCACACCAATCCCCATCACAATCAGGGATCCCTCAAATGATGGAACATGTAACAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

644

Amino Acids

71.64

Weight (kDa)

8.77

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	318 - 351	2.5e-06	PPR repeat family
PPR_2	PF13041	394 - 441	1.7e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	3 cut(s)	431, 962, 1864
AccB7I	CCANNNNNTGG	1 cut(s)	1850
AccBSI	CCGCTC	3 cut(s)	27, 138, 217
AclWI	GGATC	6 cut(s)	937, 1478, 1806, 1879, 1894, 1907
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	781, 1458
AcuI	CTGAAG	1 cut(s)	1631
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	6 cut(s)	449, 464, 641, 917, 1623, 1688
AfiI	CCNNNNNNNGG	2 cut(s)	1850, 1862
AflII	CTTAAG	3 cut(s)	815, 980, 1349
AflIII	ACRYGT	1 cut(s)	1918
AjiI	CACGTC	1 cut(s)	1183
AjnI	CCWGG	1 cut(s)	1053
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AluBI	AGCT	7 cut(s)	802, 814, 950, 1105, 1643, 1814, 1928
AluI	AGCT	7 cut(s)	802, 814, 950, 1105, 1643, 1814, 1928
Alw26I	GTCTC	3 cut(s)	281, 1064, 1673
AlwI	GGATC	6 cut(s)	937, 1478, 1806, 1879, 1894, 1907
AoxI	GGCC	6 cut(s)	241, 304, 441, 565, 792, 897
ApeKI	GCWGC	1 cut(s)	1928
ApoI	RAATTY	2 cut(s)	781, 1458
ArsI	GACNNNNNNTTYG	2 cut(s)	1145, 1177
AscI	GGCGCGCC	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	1616
AspLEI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
AspS9I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
AvaII	GGWCC	3 cut(s)	1754, 1832, 1853
BamHI	GGATCC	1 cut(s)	1899
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	3 cut(s)	385, 409, 1257
BbvI	GCAGC	1 cut(s)	1915
BccI	CCATC	9 cut(s)	113, 440, 833, 1780, 1813, 1819, 1852, 1894, 1906
BceAI	ACGGC	3 cut(s)	359, 552, 1733
BciT130I	CCWGG	1 cut(s)	1055
BclI	TGATCA	2 cut(s)	1243, 1518
BcoDI	GTCTC	3 cut(s)	281, 1064, 1673
BfaI	CTAG	5 cut(s)	1209, 1395, 1445, 1683, 1701
BfoI	RGCGCY	2 cut(s)	181, 196
BfrI	CTTAAG	3 cut(s)	815, 980, 1349
BfuAI	ACCTGC	3 cut(s)	431, 962, 1864
Bme1390I	CCNGG	1 cut(s)	1055
Bme18I	GGWCC	3 cut(s)	1754, 1832, 1853
BmgBI	CACGTC	1 cut(s)	1183
BmgT120I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
BmiI	GGNNCC	3 cut(s)	238, 1777, 1901
BmrFI	CCNGG	1 cut(s)	1055
BmsI	GCATC	4 cut(s)	658, 1303, 1333, 1486
BpiI	GAAGAC	3 cut(s)	385, 409, 1257
BpuEI	CTTGAG	2 cut(s)	605, 1845
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	5 cut(s)	375, 451, 900, 1176, 1715
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 275, 305, 1681, 1711
Bsc4I	CCNNNNNNNGG	2 cut(s)	1850, 1862
Bse118I	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
Bse1I	ACTGG	2 cut(s)	1500, 1800
Bse3DI	GCAATG	5 cut(s)	433, 603, 964, 1203, 1540
BseBI	CCWGG	1 cut(s)	1055
BseDI	CCNNGG	5 cut(s)	375, 451, 900, 1176, 1715
BseGI	GGATG	3 cut(s)	945, 1233, 1378
BseLI	CCNNNNNNNGG	2 cut(s)	1850, 1862
BseMI	GCAATG	5 cut(s)	433, 603, 964, 1203, 1540
BseMII	CTCAG	3 cut(s)	1410, 1668, 1796
BseNI	ACTGG	2 cut(s)	1500, 1800
BsePI	GCGCGC	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	1915
BseYI	CCCAGC	2 cut(s)	946, 1643
BsgI	GTGCAG	1 cut(s)	1590
BshFI	GGCC	6 cut(s)	243, 306, 443, 567, 794, 899
BsiSI	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
BslFI	GGGAC	2 cut(s)	322, 609
BslI	CCNNNNNNNGG	2 cut(s)	1850, 1862
BsmAI	GTCTC	3 cut(s)	281, 1064, 1673
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	322, 609
BsnI	GGCC	6 cut(s)	243, 306, 443, 567, 794, 899
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
Bsp19I	CCATGG	2 cut(s)	900, 1176
BspANI	GGCC	6 cut(s)	243, 306, 443, 567, 794, 899
BspCNI	CTCAG	3 cut(s)	1411, 1669, 1795
BspLI	GGNNCC	3 cut(s)	238, 1777, 1901
BspMI	ACCTGC	3 cut(s)	431, 962, 1864
BspPI	GGATC	6 cut(s)	937, 1478, 1806, 1879, 1894, 1907
BspTI	CTTAAG	3 cut(s)	815, 980, 1349
BsrBI	CCGCTC	3 cut(s)	27, 138, 217
BsrDI	GCAATG	5 cut(s)	433, 603, 964, 1203, 1540
BsrFI	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
BsrI	ACTGG	2 cut(s)	1500, 1800
BssAI	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
BssECI	CCNNGG	5 cut(s)	375, 451, 900, 1176, 1715
BssHII	GCGCGC	1 cut(s)	380
BssMI	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	900, 1176
Bst2UI	CCWGG	1 cut(s)	1055
Bst4CI	ACNGT	4 cut(s)	14, 415, 557, 1451
Bst6I	CTCTTC	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	363
BstAFI	CTTAAG	3 cut(s)	815, 980, 1349
BstC8I	GCNNGC	4 cut(s)	191, 245, 352, 382
BstDEI	CTNAG	3 cut(s)	1419, 1677, 1782
BstDSI	CCRYGG	5 cut(s)	375, 451, 900, 1176, 1715
BstENI	CCTNNNNNAGG	1 cut(s)	1860
BstF5I	GGATG	3 cut(s)	945, 1233, 1378
BstH2I	RGCGCY	2 cut(s)	181, 196
BstHHI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
BstKTI	GATC	8 cut(s)	945, 1246, 1486, 1521, 1739, 1801, 1874, 1902
BstMAI	GTCTC	3 cut(s)	281, 1064, 1673
BstMBI	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
BstNI	CCWGG	1 cut(s)	1055
BstNSI	RCATGY	1 cut(s)	1922
BstSCI	CCNGG	1 cut(s)	1053
BstV1I	GCAGC	1 cut(s)	1915
BstV2I	GAAGAC	3 cut(s)	385, 409, 1257
BstX2I	RGATCY	2 cut(s)	1483, 1899
BstXI	CCANNNNNNTGG	3 cut(s)	862, 1183, 1829
BstYI	RGATCY	2 cut(s)	1483, 1899
BsuRI	GGCC	6 cut(s)	243, 306, 443, 567, 794, 899
BtgI	CCRYGG	5 cut(s)	375, 451, 900, 1176, 1715
BtgZI	GCGATG	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	1183
BtsCI	GGATG	3 cut(s)	945, 1233, 1378
BtsI	GCAGTG	2 cut(s)	609, 696
BtsIMutI	CAGTG	4 cut(s)	553, 609, 696, 1607
BveI	ACCTGC	3 cut(s)	431, 962, 1864
Cac8I	GCNNGC	4 cut(s)	191, 245, 352, 382
CfoI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
Cfr10I	RCCGGY	5 cut(s)	350, 594, 631, 642, 671
Cfr13I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
Cfr42I	CCGCGG	1 cut(s)	454
CseI	GACGC	4 cut(s)	230, 371, 479, 695
Csp6I	GTAC	6 cut(s)	448, 463, 640, 916, 1622, 1687
CviAII	CATG	9 cut(s)	445, 725, 901, 986, 1005, 1177, 1522, 1625, 1919
CviQI	GTAC	6 cut(s)	448, 463, 640, 916, 1622, 1687
DdeI	CTNAG	3 cut(s)	1419, 1677, 1782
DpnI	GATC	8 cut(s)	944, 1245, 1485, 1520, 1738, 1800, 1873, 1901
DpnII	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
EciI	GGCGGA	3 cut(s)	23, 283, 1668
Eco130I	CCWWGG	2 cut(s)	900, 1176
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	3 cut(s)	1754, 1832, 1853
Eco57I	CTGAAG	1 cut(s)	1631
EcoNI	CCTNNNNNAGG	1 cut(s)	1860
EcoRII	CCWGG	1 cut(s)	1053
EcoT14I	CCWWGG	2 cut(s)	900, 1176
EcoT22I	ATGCAT	1 cut(s)	1318
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	2 cut(s)	900, 1176
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	9 cut(s)	448, 728, 904, 989, 1008, 1180, 1525, 1628, 1922
FalI	AAGNNNNNCTT	4 cut(s)	963, 995, 1530, 1562
FaqI	GGGAC	2 cut(s)	322, 609
FatI	CATG	9 cut(s)	444, 724, 900, 985, 1004, 1176, 1521, 1624, 1918
FauI	CCCGC	4 cut(s)	143, 222, 252, 1180
FbaI	TGATCA	2 cut(s)	1243, 1518
FokI	GGATG	3 cut(s)	952, 1240, 1385
FriOI	GRGCYC	1 cut(s)	213
FspBI	CTAG	5 cut(s)	1209, 1395, 1445, 1683, 1701
GlaI	GCGC	9 cut(s)	179, 194, 225, 257, 270, 349, 381, 383, 407
GsaI	CCCAGC	2 cut(s)	950, 1647
HaeII	RGCGCY	2 cut(s)	181, 196
HaeIII	GGCC	6 cut(s)	243, 306, 443, 567, 794, 899
HapII	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
HgaI	GACGC	4 cut(s)	230, 371, 479, 695
HhaI	GCGC	9 cut(s)	180, 195, 226, 258, 271, 350, 382, 384, 408
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	9 cut(s)	448, 728, 904, 989, 1008, 1180, 1525, 1628, 1922
Hin6I	GCGC	9 cut(s)	178, 193, 224, 256, 269, 348, 380, 382, 406
HinP1I	GCGC	9 cut(s)	178, 193, 224, 256, 269, 348, 380, 382, 406
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	5 cut(s)	284, 734, 905, 1303, 1763
HpaII	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
Hpy166II	GTNNAC	3 cut(s)	694, 1544, 1689
Hpy188I	TCNGA	4 cut(s)	1069, 1237, 1308, 1785
Hpy188III	TCNNGA	5 cut(s)	584, 1138, 1773, 1851, 1869
Hpy8I	GTNNAC	3 cut(s)	694, 1544, 1689
Hpy99I	CGWCG	5 cut(s)	224, 234, 305, 365, 812
HpyAV	CCTTC	6 cut(s)	151, 886, 991, 1135, 1144, 1532
HpyCH4III	ACNGT	4 cut(s)	14, 415, 557, 1451
HpyCH4IV	ACGT	3 cut(s)	638, 1182, 1287
HpyCH4V	TGCA	6 cut(s)	426, 957, 1316, 1454, 1533, 1607
HpyF3I	CTNAG	3 cut(s)	1419, 1677, 1782
HpySE526I	ACGT	3 cut(s)	638, 1182, 1287
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	9 cut(s)	448, 728, 904, 989, 1008, 1180, 1525, 1628, 1922
HspAI	GCGC	9 cut(s)	178, 193, 224, 256, 269, 348, 380, 382, 406
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	2 cut(s)	1243, 1518
KspI	CCGCGG	1 cut(s)	454
Kzo9I	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
LmnI	GCTCC	4 cut(s)	24, 143, 231, 242
Lsp1109I	GCAGC	1 cut(s)	1915
LweI	GCATC	4 cut(s)	658, 1303, 1333, 1486
MaeI	CTAG	5 cut(s)	1209, 1395, 1445, 1683, 1701
MaeII	ACGT	3 cut(s)	638, 1182, 1287
MaeIII	GTNAC	6 cut(s)	3, 634, 683, 1288, 1403, 1921
MalI	GATC	8 cut(s)	944, 1245, 1485, 1520, 1738, 1800, 1873, 1901
MbiI	CCGCTC	3 cut(s)	27, 138, 217
MboI	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
MboII	GAAGA	8 cut(s)	173, 385, 409, 475, 865, 1006, 1257, 1477
MflI	RGATCY	2 cut(s)	1483, 1899
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	8 cut(s)	538, 781, 1048, 1063, 1259, 1458, 1616, 1721
MlyI	GAGTC	2 cut(s)	278, 1297
MmeI	TCCRAC	2 cut(s)	423, 531
Mph1103I	ATGCAT	1 cut(s)	1318
MreI	CGCCGGCG	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	1616
MslI	CAYNNNNRTG	3 cut(s)	558, 860, 1181
MspA1I	CMGCKG	2 cut(s)	453, 1928
MspCI	CTTAAG	3 cut(s)	815, 980, 1349
MspI	CCGG	6 cut(s)	240, 351, 595, 632, 643, 672
MspR9I	CCNGG	1 cut(s)	1055
MvaI	CCWGG	1 cut(s)	1055
NaeI	GCCGGC	1 cut(s)	352
NcoI	CCATGG	2 cut(s)	900, 1176
NdeII	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	9 cut(s)	448, 728, 904, 989, 1008, 1180, 1525, 1628, 1922
NlaIV	GGNNCC	3 cut(s)	238, 1777, 1901
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	3 cut(s)	3, 634, 683
NsiI	ATGCAT	1 cut(s)	1318
NspI	RCATGY	1 cut(s)	1922
PalAI	GGCGCGCC	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	431
PauI	GCGCGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	1918
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PdiI	GCCGGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	1616
PfeI	GAWTC	3 cut(s)	734, 905, 1763
PflMI	CCANNNNNTGG	1 cut(s)	1850
PleI	GAGTC	2 cut(s)	278, 1297
PpsI	GAGTC	2 cut(s)	278, 1297
PscI	ACATGT	1 cut(s)	1918
Psp6I	CCWGG	1 cut(s)	1053
PspFI	CCCAGC	2 cut(s)	946, 1643
PspGI	CCWGG	1 cut(s)	1053
PspN4I	GGNNCC	3 cut(s)	238, 1777, 1901
PspPI	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
PsuI	RGATCY	2 cut(s)	1483, 1899
PteI	GCGCGC	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	1928
RsaI	GTAC	6 cut(s)	449, 464, 641, 917, 1623, 1688
RsaNI	GTAC	6 cut(s)	448, 463, 640, 916, 1622, 1687
RseI	CAYNNNNRTG	3 cut(s)	558, 860, 1181
SacII	CCGCGG	1 cut(s)	454
Sau3AI	GATC	8 cut(s)	942, 1243, 1483, 1518, 1736, 1798, 1871, 1899
Sau96I	GGNCC	6 cut(s)	242, 305, 565, 1754, 1832, 1853
SchI	GAGTC	2 cut(s)	278, 1297
ScrFI	CCNGG	1 cut(s)	1055
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	658, 1303, 1333, 1486
Sfr303I	CCGCGG	1 cut(s)	454
SgrAI	CRCCGGYG	2 cut(s)	350, 631
SgrBI	CCGCGG	1 cut(s)	454
SgsI	GGCGCGCC	1 cut(s)	380
SinI	GGWCC	3 cut(s)	1754, 1832, 1853
SmiMI	CAYNNNNRTG	3 cut(s)	558, 860, 1181
SmlI	CTYRAG	5 cut(s)	584, 815, 980, 1349, 1860
SmoI	CTYRAG	5 cut(s)	584, 815, 980, 1349, 1860
Sse9I	AATT	8 cut(s)	538, 781, 1048, 1063, 1259, 1458, 1616, 1721
SspMI	CTAG	5 cut(s)	1209, 1395, 1445, 1683, 1701
StyD4I	CCNGG	1 cut(s)	1053
StyI	CCWWGG	2 cut(s)	900, 1176
TaaI	ACNGT	4 cut(s)	14, 415, 557, 1451
TaiI	ACGT	3 cut(s)	641, 1185, 1290
TaqI	TCGA	5 cut(s)	219, 287, 360, 573, 807
TasI	AATT	8 cut(s)	538, 781, 1048, 1063, 1259, 1458, 1616, 1721
TfiI	GAWTC	3 cut(s)	734, 905, 1763
TscAI	CASTG	4 cut(s)	560, 616, 696, 1614
TseFI	GTSAC	3 cut(s)	3, 634, 683
TseI	GCWGC	1 cut(s)	1928
Tsp45I	GTSAC	3 cut(s)	3, 634, 683
TspDTI	ATGAA	2 cut(s)	897, 1551
TspGWI	ACGGA	2 cut(s)	218, 379
TspRI	CASTG	4 cut(s)	560, 616, 696, 1614
Van91I	CCANNNNNTGG	1 cut(s)	1850
Vha464I	CTTAAG	3 cut(s)	815, 980, 1349
VpaK11BI	GGWCC	3 cut(s)	1754, 1832, 1853
XagI	CCTNNNNNAGG	1 cut(s)	1860
XapI	RAATTY	2 cut(s)	781, 1458
XceI	RCATGY	1 cut(s)	1922
XmnI	GAANNNNTTC	1 cut(s)	1616
XspI	CTAG	5 cut(s)	1209, 1395, 1445, 1683, 1701
Zsp2I	ATGCAT	1 cut(s)	1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.