Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003510.1

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Forward (+)

97484 .. 98029

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003510.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgatggatgttgggttgcgagtggttgctagttttggtaacagggtgtctactgagttgattaagaatgggaaagcagtggactgtgcaaaatttttgaagaaaatgggagatgaagatcctaaaccagatgccagttgctatgatgttgtgatcagggggctcagcaatgaaggtgaacttgacccaagccttgatttagtggcagaaatggtgagatatggcattggtgttcctcctgcactgaagcaattcgtatacatggcttttgaaaaagttgggcgtgacggacagattgagagaacattaactgagactaggtacacaccacctcctagaatgccacaaccacggcaatgccagcccataagatcacctcaaatggcaggaccacaggaatcgccatcaggaacctctcagatggcaggactcgatcacccatcacagctccctctcaaatggctggaccatatcagccatcatctggacccgctcaagggtctggatcacaccaatccccatcagaatcagggactcctcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

181

Amino Acids

20.05

Weight (kDa)

6.59

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	493
AccI	GTMKAC	2 cut(s)	50, 258
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	2 cut(s)	113, 513
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	484, 496, 497
AgsI	TTSAA	2 cut(s)	100, 272
AluBI	AGCT	1 cut(s)	448
AluI	AGCT	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	113, 513
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	251
AspS9I	GGNCC	3 cut(s)	389, 466, 487
AsuHPI	GGTGA	4 cut(s)	188, 226, 366, 428
AvaII	GGWCC	3 cut(s)	389, 466, 487
BanII	GRGCYC	1 cut(s)	165
BccI	CCATC	5 cut(s)	412, 415, 448, 486, 528
BceAI	ACGGC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	3 cut(s)	30, 318, 336
BlpI	GCTNAGC	1 cut(s)	164
Bme18I	GGWCC	3 cut(s)	389, 466, 487
BmgT120I	GGNCC	3 cut(s)	389, 466, 487
BmiI	GGNNCC	2 cut(s)	412, 489
BmsI	GCATC	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 496, 497
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	2 cut(s)	175, 362
Bse8I	GATNNNNATC	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	484, 496, 497
BseMI	GCAATG	2 cut(s)	175, 362
BseMII	CTCAG	4 cut(s)	45, 178, 303, 431
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	484, 496, 497
BsmAI	GTCTC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	118, 153, 371, 433, 505
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	491
BspCNI	CTCAG	4 cut(s)	46, 177, 304, 430
BspLI	GGNNCC	2 cut(s)	412, 489
BspPI	GGATC	2 cut(s)	113, 513
BsrBI	CCGCTC	1 cut(s)	493
BsrDI	GCAATG	2 cut(s)	175, 362
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	5 cut(s)	118, 153, 371, 433, 505
BssNAI	GTATAC	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	54, 164, 312, 417
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	5 cut(s)	121, 156, 374, 436, 508
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	5 cut(s)	118, 153, 371, 433, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 242
Cac8I	GCNNGC	1 cut(s)	362
Cfr13I	GGNCC	3 cut(s)	389, 466, 487
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	7 cut(s)	163, 192, 266, 364, 448, 463, 477
CviKI_1	RGCY	7 cut(s)	163, 192, 266, 364, 448, 463, 477
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	4 cut(s)	54, 164, 312, 417
DpnI	GATC	5 cut(s)	120, 155, 373, 435, 507
DpnII	GATC	5 cut(s)	118, 153, 371, 433, 505
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	389, 466, 487
Eco57I	CTGAAG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	1 cut(s)	265
FaiI	YATR	6 cut(s)	144, 222, 259, 263, 368, 471
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	1 cut(s)	261
FauI	CCCGC	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	2 cut(s)	50, 258
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	30, 318, 336
Hin1II	CATG	1 cut(s)	265
HinfI	GANTC	4 cut(s)	398, 429, 526, 534
HphI	GGTGA	4 cut(s)	188, 226, 366, 428
Hpy166II	GTNNAC	5 cut(s)	51, 82, 179, 259, 324
Hpy188I	TCNGA	2 cut(s)	420, 525
Hpy188III	TCNNGA	3 cut(s)	408, 485, 503
Hpy8I	GTNNAC	5 cut(s)	51, 82, 179, 259, 324
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	89, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	4 cut(s)	54, 164, 312, 417
Hsp92II	CATG	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	5 cut(s)	118, 153, 371, 433, 505
LmnI	GCTCC	1 cut(s)	453
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	3 cut(s)	30, 318, 336
MaeIII	GTNAC	2 cut(s)	38, 284
MalI	GATC	5 cut(s)	120, 155, 373, 435, 507
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	5 cut(s)	118, 153, 371, 433, 505
MboII	GAAGA	2 cut(s)	112, 128
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	2 cut(s)	92, 251
MlyI	GAGTC	2 cut(s)	423, 528
MnlI	CCTC	5 cut(s)	246, 342, 387, 424, 462
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	2 cut(s)	63, 308
MslI	CAYNNNNRTG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	361
NdeII	GATC	5 cut(s)	118, 153, 371, 433, 505
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	2 cut(s)	412, 489
NmuCI	GTSAC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	398, 526
PflMI	CCANNNNNTGG	1 cut(s)	484
PleI	GAGTC	2 cut(s)	423, 528
PpsI	GAGTC	2 cut(s)	423, 528
PspN4I	GGNNCC	2 cut(s)	412, 489
PspPI	GGNCC	3 cut(s)	389, 466, 487
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	63, 308
Sau3AI	GATC	5 cut(s)	118, 153, 371, 433, 505
Sau96I	GGNCC	3 cut(s)	389, 466, 487
SchI	GAGTC	2 cut(s)	423, 528
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	6 cut(s)	178, 323, 334, 379, 416, 450
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	3 cut(s)	389, 466, 487
SmiMI	CAYNNNNRTG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	92, 251
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	3 cut(s)	30, 318, 336
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	432
TasI	AATT	2 cut(s)	92, 251
TfiI	GAWTC	2 cut(s)	398, 526
Tru1I	TTAA	2 cut(s)	63, 308
Tru9I	TTAA	2 cut(s)	63, 308
TscAI	CASTG	2 cut(s)	84, 249
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	129, 186
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	84, 249
Van91I	CCANNNNNTGG	1 cut(s)	484
VpaK11BI	GGWCC	3 cut(s)	389, 466, 487
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	2 cut(s)	50, 258
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	3 cut(s)	30, 318, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.