Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Forward (+)

31574886 .. 31577515

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGATTCTAAGTGGAACCAAAACCCCTCATTTCCCATTTGCTTGCTTACTAGGGTTTAAGCCCCAGTTATACCAGAACCCCTCCCTCACTCTCTCTCTCTCTCTAAACGCCATGTCGCTGTACCGCCTGCTCCTCCGCTCTCTCCGCCGCCCAACCACCACCCCACAACCCATAACCCAATCCCAATCCCTAACCTCCCTCACCCTCCAAAACCCCATCTCCAATCCTCACTCTCTCACCACCACCCGCTCCTTCGCCTATTCCACCGCCGAAGAAGCCGCCGCCGAGCGCCGCCGCCGCAAGCGCCGCCTCCGCATAGAGCCCCCGCTCGACGCGCTCCGTCGCGGCTCCGGCCCGCCGCCTCCGCGCGACCCCAACGCGCCCCGCCTCCCCGACTCGACCTCCGCCCTCGTCGGCCCTCGCCTCAACCTCCACAACCGCGTTCAGTCCCTCATACGCGCCGGCGACCTCGACGCCGCCTCTGCCGTAGCGCGCCACTCCGTCTTCTCCAACACGCGCCCCACCGTCTTCACCTGCAATGCCATCATCGCCGCCATGTACCGCGGCAAGAGGTACAATGACGCTATTGCCCTCTTCCACTTCTTTTTCAACCAGTCCAACATTGTTCCCAACATTGTATCTTATAATAATTTGATTAACACTCACTGTGATGAGGGCCGTGTCGATGTGGGTCTTGAGATTTACCGGCATATCATTGCAACTGCCCCTTTTAGTCCCTCGCCGGTGACGTACCGGCATTTGACTAAAGGGTTGATTGATGCCGGTAGGATAGGTGACGCCGTGGACTTGTTGAGGGAGATGTTGAATAAGGGGCATGGTGCTGATTCTTTGGTTTTCAATAACTTGATTAAAGGGTTCTTGGATTTGGAGAATTTGGACAAGGCCAATGAGCTTTTCGACGAGCTTAAGGAGAGGTGTTTGGTGTATGATGGGGTTGTCAATGCCACCTTTATGGATTGGTTCTTCAATAAGGGGAAAGAGAAGGAGGCCATGGATTCATACAGGTACTTGCTTGATAGGCAGTTTAGGATGATCCCAGCTACCTGCAATGTTCTCTTGGAAGTGTTGCTTAAGCATGGCAAGAAGAAGGAGGCATGGGCTTTGTTTGAACAAATGCTGGATAATCACACACCACCCAATTTCCAGGCAGTTAATTCCGAGACTTTTAATATAATGGTCAATGAGTGTTTTAAGCTTGGGAAGTTTGGTGAGGCGTTTGACACCTTCAAGAAGGTGGGAACAAATGTGAAGTCAAAGCCTTTTTCCATGGACGTTGCGGGGTATAATAATATCATTGCTAGGTATTGTGAGAATGGGATGTTATCGGAGGCTGATCAACTATTTACAGAATTGTCGTCAAAGTCGCTGACCCCAGACGTAACAACACATAAGACTCTGATTGATGCATATTTGAATGTAGAGAGGATAGATGATGCTCTTAAGATATTTAACAGAATGGTGGATGTTGGGTTGCGAGTGGTTGCTAGTTTTGGTAACAGGGTGTTTACTGAGTTGATTAAGAATGGGAAAGCACTGGACTGTGCAAAATTTTTGAAGAAAATGGGAGAGAAAGATCCTAAACCAGATGCCAGTTGCTATGATGTTGTGATCAGGGGGCTTTGCAATGAAGGTGAACTTGACCCAAGCCTTGATTTACTGACAGAAATGGTGAGATATGGCATTGGTGTTCCTCCTGCACTGAAGCAATTCGTATACGAGGCTTTTGAAAAAGCTGGGCGTGGCGGACAGATTGAGAGAACATTAACTGAGACTAGGTACACACCACCTCCTAGAATGGCACCACCACGTCAGTTCCCGCCCATAAGATCACCTCAAATGGCAGGACCACAGGAATCACCATCAGGAACCTCTCAGATGGCAGGACTGGATCACCTATCATCAGCTGCCTCTCAAATGGCTGGACCATATCAGCCATCATCTGGACCTGCTCAAGGGTCTGGATCACACCAATCCCCATCACAATCAGGGACCTCTCAAACGATGGAACCTGTAACAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

681

Amino Acids

75.65

Weight (kDa)

8.95

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	355 - 388	2.7e-06	PPR repeat family
PPR_2	PF13041	431 - 478	4.1e-11	PPR repeat family
TPR_24	PF23276	451 - 560	9.9e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	3 cut(s)	542, 1073, 1975
AccB1I	GGYRCC	1 cut(s)	1819
AccB7I	CCANNNNNTGG	1 cut(s)	1961
AccBSI	CCGCTC	3 cut(s)	138, 249, 328
AccI	GTMKAC	1 cut(s)	1734
AclWI	GGATC	4 cut(s)	1048, 1589, 1917, 1990
AcsI	RAATTY	2 cut(s)	892, 1568
AcuI	CTGAAG	1 cut(s)	1742
AcyI	GRCGYC	2 cut(s)	474, 798
AfaI	GTAC	6 cut(s)	122, 560, 575, 752, 1028, 1799
AfiI	CCNNNNNNNGG	2 cut(s)	1961, 1973
AflII	CTTAAG	3 cut(s)	926, 1091, 1460
AgsI	TTSAA	9 cut(s)	610, 826, 859, 988, 1130, 1249, 1435, 1576, 1748
AjiI	CACGTC	1 cut(s)	1829
AjnI	CCWGG	1 cut(s)	1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
AluBI	AGCT	6 cut(s)	913, 925, 1061, 1216, 1754, 1925
AluI	AGCT	6 cut(s)	913, 925, 1061, 1216, 1754, 1925
Alw26I	GTCTC	2 cut(s)	1175, 1784
AlwI	GGATC	4 cut(s)	1048, 1589, 1917, 1990
AoxI	GGCC	5 cut(s)	352, 415, 676, 903, 1008
ApeKI	GCWGC	1 cut(s)	1925
ApoI	RAATTY	2 cut(s)	892, 1568
ArsI	GACNNNNNNTTYG	2 cut(s)	1256, 1288
Asp700I	GAANNNNTTC	1 cut(s)	1727
AspLEI	GCGC	9 cut(s)	291, 306, 337, 369, 382, 461, 493, 495, 519
AspS9I	GGNCC	7 cut(s)	353, 416, 676, 1865, 1943, 1964, 2010
AvaII	GGWCC	4 cut(s)	1865, 1943, 1964, 2010
BanI	GGYRCC	1 cut(s)	1819
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	2 cut(s)	496, 520
BbvI	GCAGC	1 cut(s)	1912
BccI	CCATC	8 cut(s)	224, 551, 944, 1888, 1891, 1963, 2005, 2017
BceAI	ACGGC	3 cut(s)	470, 663, 785
BciT130I	CCWGG	1 cut(s)	1166
BclI	TGATCA	2 cut(s)	1354, 1629
BcoDI	GTCTC	2 cut(s)	1175, 1784
BfaI	CTAG	5 cut(s)	50, 1320, 1506, 1794, 1812
BfoI	RGCGCY	2 cut(s)	292, 307
BfrI	CTTAAG	3 cut(s)	926, 1091, 1460
BfuAI	ACCTGC	3 cut(s)	542, 1073, 1975
Bme1390I	CCNGG	1 cut(s)	1166
Bme18I	GGWCC	4 cut(s)	1865, 1943, 1964, 2010
BmgBI	CACGTC	1 cut(s)	1829
BmgT120I	GGNCC	7 cut(s)	353, 416, 676, 1865, 1943, 1964, 2010
BmiI	GGNNCC	6 cut(s)	16, 349, 1821, 1888, 2011, 2028
BmrFI	CCNGG	1 cut(s)	1166
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	4 cut(s)	769, 1414, 1444, 1597
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	2 cut(s)	496, 520
BpuEI	CTTGAG	2 cut(s)	716, 1956
BsaHI	GRCGYC	2 cut(s)	474, 798
BsaJI	CCNNGG	4 cut(s)	562, 801, 1011, 1287
BsaXI	ACNNNNNCTCC	6 cut(s)	203, 233, 386, 416, 1792, 1822
Bsc4I	CCNNNNNNNGG	2 cut(s)	1961, 1973
Bse118I	RCCGGY	5 cut(s)	461, 705, 742, 753, 782
Bse1I	ACTGG	5 cut(s)	64, 613, 1560, 1611, 1911
Bse3DI	GCAATG	5 cut(s)	544, 714, 1075, 1314, 1651
BseBI	CCWGG	1 cut(s)	1166
BseDI	CCNNGG	4 cut(s)	562, 801, 1011, 1287
BseGI	GGATG	3 cut(s)	1056, 1344, 1489
BseLI	CCNNNNNNNGG	2 cut(s)	1961, 1973
BseMI	GCAATG	5 cut(s)	544, 714, 1075, 1314, 1651
BseMII	CTCAG	3 cut(s)	1521, 1779, 1907
BseNI	ACTGG	5 cut(s)	64, 613, 1560, 1611, 1911
BsePI	GCGCGC	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	1912
BseYI	CCCAGC	2 cut(s)	1057, 1754
BsgI	GTGCAG	1 cut(s)	1701
BshFI	GGCC	5 cut(s)	354, 417, 678, 905, 1010
BshNI	GGYRCC	1 cut(s)	1819
BsiSI	CCGG	6 cut(s)	351, 462, 706, 743, 754, 783
BslFI	GGGAC	3 cut(s)	433, 720, 2023
BslI	CCNNNNNNNGG	2 cut(s)	1961, 1973
BsmAI	GTCTC	2 cut(s)	1175, 1784
BsmFI	GGGAC	3 cut(s)	433, 720, 2023
BsnI	GGCC	5 cut(s)	354, 417, 678, 905, 1010
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
Bsp19I	CCATGG	2 cut(s)	1011, 1287
BspANI	GGCC	5 cut(s)	354, 417, 678, 905, 1010
BspCNI	CTCAG	3 cut(s)	1522, 1780, 1906
BspLI	GGNNCC	6 cut(s)	16, 349, 1821, 1888, 2011, 2028
BspMI	ACCTGC	3 cut(s)	542, 1073, 1975
BspPI	GGATC	4 cut(s)	1048, 1589, 1917, 1990
BspT107I	GGYRCC	1 cut(s)	1819
BspTI	CTTAAG	3 cut(s)	926, 1091, 1460
BsrBI	CCGCTC	3 cut(s)	138, 249, 328
BsrDI	GCAATG	5 cut(s)	544, 714, 1075, 1314, 1651
BsrFI	RCCGGY	5 cut(s)	461, 705, 742, 753, 782
BsrI	ACTGG	5 cut(s)	64, 613, 1560, 1611, 1911
BssAI	RCCGGY	5 cut(s)	461, 705, 742, 753, 782
BssECI	CCNNGG	4 cut(s)	562, 801, 1011, 1287
BssHII	GCGCGC	1 cut(s)	491
BssMI	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
BssNAI	GTATAC	1 cut(s)	1735
BssNI	GRCGYC	2 cut(s)	474, 798
BssT1I	CCWWGG	2 cut(s)	1011, 1287
Bst1107I	GTATAC	1 cut(s)	1735
Bst2UI	CCWGG	1 cut(s)	1166
Bst4CI	ACNGT	4 cut(s)	526, 668, 1562, 2038
Bst6I	CTCTTC	1 cut(s)	599
BstACI	GRCGYC	2 cut(s)	474, 798
BstAFI	CTTAAG	3 cut(s)	926, 1091, 1460
BstC8I	GCNNGC	6 cut(s)	43, 128, 302, 356, 463, 493
BstDEI	CTNAG	4 cut(s)	8, 1530, 1788, 1893
BstDSI	CCRYGG	4 cut(s)	562, 801, 1011, 1287
BstENI	CCTNNNNNAGG	1 cut(s)	1971
BstF5I	GGATG	3 cut(s)	1056, 1344, 1489
BstH2I	RGCGCY	2 cut(s)	292, 307
BstHHI	GCGC	9 cut(s)	291, 306, 337, 369, 382, 461, 493, 495, 519
BstKTI	GATC	7 cut(s)	1056, 1357, 1597, 1632, 1850, 1912, 1985
BstMAI	GTCTC	2 cut(s)	1175, 1784
BstMBI	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
BstNI	CCWGG	1 cut(s)	1166
BstSCI	CCNGG	1 cut(s)	1164
BstV1I	GCAGC	1 cut(s)	1912
BstV2I	GAAGAC	2 cut(s)	496, 520
BstX2I	RGATCY	1 cut(s)	1594
BstXI	CCANNNNNNTGG	1 cut(s)	973
BstYI	RGATCY	1 cut(s)	1594
BstZ17I	GTATAC	1 cut(s)	1735
BsuRI	GGCC	5 cut(s)	354, 417, 678, 905, 1010
BtgI	CCRYGG	4 cut(s)	562, 801, 1011, 1287
BtgZI	GCGATG	1 cut(s)	532
BtrI	CACGTC	1 cut(s)	1829
BtsCI	GGATG	3 cut(s)	1056, 1344, 1489
BtsIMutI	CAGTG	3 cut(s)	664, 1553, 1718
BveI	ACCTGC	3 cut(s)	542, 1073, 1975
Cac8I	GCNNGC	6 cut(s)	43, 128, 302, 356, 463, 493
CfoI	GCGC	9 cut(s)	291, 306, 337, 369, 382, 461, 493, 495, 519
Cfr10I	RCCGGY	5 cut(s)	461, 705, 742, 753, 782
Cfr13I	GGNCC	7 cut(s)	353, 416, 676, 1865, 1943, 1964, 2010
Cfr42I	CCGCGG	1 cut(s)	565
CseI	GACGC	4 cut(s)	341, 482, 590, 806
Csp6I	GTAC	6 cut(s)	121, 559, 574, 751, 1027, 1798
CviAII	CATG	7 cut(s)	112, 556, 836, 1012, 1097, 1116, 1288
CviQI	GTAC	6 cut(s)	121, 559, 574, 751, 1027, 1798
DdeI	CTNAG	4 cut(s)	8, 1530, 1788, 1893
DpnI	GATC	7 cut(s)	1055, 1356, 1596, 1631, 1849, 1911, 1984
DpnII	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	3 cut(s)	134, 394, 1779
Eco130I	CCWWGG	2 cut(s)	1011, 1287
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	4 cut(s)	1865, 1943, 1964, 2010
Eco57I	CTGAAG	1 cut(s)	1742
EcoNI	CCTNNNNNAGG	1 cut(s)	1971
EcoO109I	RGGNCCY	1 cut(s)	2010
EcoRII	CCWGG	1 cut(s)	1164
EcoT14I	CCWWGG	2 cut(s)	1011, 1287
EcoT22I	ATGCAT	1 cut(s)	1429
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	1011, 1287
FaeI	CATG	7 cut(s)	115, 559, 839, 1015, 1100, 1119, 1291
FalI	AAGNNNNNCTT	4 cut(s)	1074, 1106, 1641, 1673
FaqI	GGGAC	3 cut(s)	433, 720, 2023
FatI	CATG	7 cut(s)	111, 555, 835, 1011, 1096, 1115, 1287
FauI	CCCGC	6 cut(s)	254, 333, 363, 392, 1291, 1845
FbaI	TGATCA	2 cut(s)	1354, 1629
FblI	GTMKAC	1 cut(s)	1734
FokI	GGATG	3 cut(s)	1063, 1351, 1496
FriOI	GRGCYC	1 cut(s)	324
FspBI	CTAG	5 cut(s)	50, 1320, 1506, 1794, 1812
GlaI	GCGC	9 cut(s)	290, 305, 336, 368, 381, 460, 492, 494, 518
GsaI	CCCAGC	2 cut(s)	1061, 1758
HaeII	RGCGCY	2 cut(s)	292, 307
HaeIII	GGCC	5 cut(s)	354, 417, 678, 905, 1010
HapII	CCGG	6 cut(s)	351, 462, 706, 743, 754, 783
HgaI	GACGC	4 cut(s)	341, 482, 590, 806
HhaI	GCGC	9 cut(s)	291, 306, 337, 369, 382, 461, 493, 495, 519
Hin1I	GRCGYC	2 cut(s)	474, 798
Hin1II	CATG	7 cut(s)	115, 559, 839, 1015, 1100, 1119, 1291
Hin6I	GCGC	9 cut(s)	289, 304, 335, 367, 380, 459, 491, 493, 517
HinP1I	GCGC	9 cut(s)	289, 304, 335, 367, 380, 459, 491, 493, 517
HindIII	AAGCTT	1 cut(s)	1214
HinfI	GANTC	6 cut(s)	4, 395, 845, 1016, 1414, 1874
HpaII	CCGG	6 cut(s)	351, 462, 706, 743, 754, 783
Hpy166II	GTNNAC	5 cut(s)	805, 1527, 1655, 1735, 1800
Hpy188I	TCNGA	4 cut(s)	1180, 1348, 1419, 1896
Hpy188III	TCNNGA	5 cut(s)	695, 1249, 1884, 1962, 1980
Hpy8I	GTNNAC	5 cut(s)	805, 1527, 1655, 1735, 1800
Hpy99I	CGWCG	5 cut(s)	335, 345, 416, 476, 923
HpyAV	CCTTC	6 cut(s)	262, 997, 1102, 1246, 1255, 1643
HpyCH4III	ACNGT	4 cut(s)	526, 668, 1562, 2038
HpyCH4IV	ACGT	4 cut(s)	749, 1293, 1398, 1828
HpyCH4V	TGCA	7 cut(s)	537, 719, 1068, 1427, 1565, 1644, 1718
HpyF3I	CTNAG	4 cut(s)	8, 1530, 1788, 1893
HpySE526I	ACGT	4 cut(s)	749, 1293, 1398, 1828
Hsp92I	GRCGYC	2 cut(s)	474, 798
Hsp92II	CATG	7 cut(s)	115, 559, 839, 1015, 1100, 1119, 1291
HspAI	GCGC	9 cut(s)	289, 304, 335, 367, 380, 459, 491, 493, 517
KroI	GCCGGC	1 cut(s)	461
KroNI	GCCGGC	1 cut(s)	463
Ksp22I	TGATCA	2 cut(s)	1354, 1629
KspI	CCGCGG	1 cut(s)	565
Kzo9I	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
LmnI	GCTCC	4 cut(s)	135, 254, 342, 353
Lsp1109I	GCAGC	1 cut(s)	1912
LweI	GCATC	4 cut(s)	769, 1414, 1444, 1597
MaeI	CTAG	5 cut(s)	50, 1320, 1506, 1794, 1812
MaeII	ACGT	4 cut(s)	749, 1293, 1398, 1828
MaeIII	GTNAC	5 cut(s)	745, 794, 1399, 1514, 2032
MalI	GATC	7 cut(s)	1055, 1356, 1596, 1631, 1849, 1911, 1984
MbiI	CCGCTC	3 cut(s)	138, 249, 328
MboI	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
MboII	GAAGA	7 cut(s)	284, 496, 520, 586, 976, 1117, 1588
MflI	RGATCY	1 cut(s)	1594
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	7 cut(s)	649, 892, 1159, 1174, 1370, 1568, 1727
MlyI	GAGTC	2 cut(s)	389, 1408
MmeI	TCCRAC	2 cut(s)	534, 642
Mph1103I	ATGCAT	1 cut(s)	1429
MreI	CGCCGGCG	1 cut(s)	461
MroNI	GCCGGC	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	1727
MslI	CAYNNNNRTG	2 cut(s)	669, 971
MspA1I	CMGCKG	2 cut(s)	564, 1925
MspCI	CTTAAG	3 cut(s)	926, 1091, 1460
MspI	CCGG	6 cut(s)	351, 462, 706, 743, 754, 783
MspR9I	CCNGG	1 cut(s)	1166
MvaI	CCWGG	1 cut(s)	1166
NaeI	GCCGGC	1 cut(s)	463
NcoI	CCATGG	2 cut(s)	1011, 1287
NdeII	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
NgoMIV	GCCGGC	1 cut(s)	461
NlaIII	CATG	7 cut(s)	115, 559, 839, 1015, 1100, 1119, 1291
NlaIV	GGNNCC	6 cut(s)	16, 349, 1821, 1888, 2011, 2028
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	745, 794
NsiI	ATGCAT	1 cut(s)	1429
PaqCI	CACCTGC	1 cut(s)	542
PauI	GCGCGC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	746
PdiI	GCCGGC	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	1727
PfeI	GAWTC	4 cut(s)	4, 845, 1016, 1874
PflMI	CCANNNNNTGG	1 cut(s)	1961
PleI	GAGTC	2 cut(s)	389, 1408
PpsI	GAGTC	2 cut(s)	389, 1408
PpuMI	RGGWCCY	1 cut(s)	2010
PsiI	TTATAA	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	2010
Psp6I	CCWGG	1 cut(s)	1164
PspFI	CCCAGC	2 cut(s)	1057, 1754
PspGI	CCWGG	1 cut(s)	1164
PspN4I	GGNNCC	6 cut(s)	16, 349, 1821, 1888, 2011, 2028
PspPI	GGNCC	7 cut(s)	353, 416, 676, 1865, 1943, 1964, 2010
PspPPI	RGGWCCY	1 cut(s)	2010
PsuI	RGATCY	1 cut(s)	1594
PteI	GCGCGC	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	1925
RsaI	GTAC	6 cut(s)	122, 560, 575, 752, 1028, 1799
RsaNI	GTAC	6 cut(s)	121, 559, 574, 751, 1027, 1798
RseI	CAYNNNNRTG	2 cut(s)	669, 971
SacII	CCGCGG	1 cut(s)	565
Sau3AI	GATC	7 cut(s)	1053, 1354, 1594, 1629, 1847, 1909, 1982
Sau96I	GGNCC	7 cut(s)	353, 416, 676, 1865, 1943, 1964, 2010
SchI	GAGTC	2 cut(s)	389, 1408
ScrFI	CCNGG	1 cut(s)	1166
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	4 cut(s)	769, 1414, 1444, 1597
Sfr303I	CCGCGG	1 cut(s)	565
SgrAI	CRCCGGYG	2 cut(s)	461, 742
SgrBI	CCGCGG	1 cut(s)	565
SinI	GGWCC	4 cut(s)	1865, 1943, 1964, 2010
SmiMI	CAYNNNNRTG	2 cut(s)	669, 971
SmlI	CTYRAG	5 cut(s)	695, 926, 1091, 1460, 1971
SmoI	CTYRAG	5 cut(s)	695, 926, 1091, 1460, 1971
Sse9I	AATT	7 cut(s)	649, 892, 1159, 1174, 1370, 1568, 1727
SspMI	CTAG	5 cut(s)	50, 1320, 1506, 1794, 1812
StyD4I	CCNGG	1 cut(s)	1164
StyI	CCWWGG	2 cut(s)	1011, 1287
TaaI	ACNGT	4 cut(s)	526, 668, 1562, 2038
TaiI	ACGT	4 cut(s)	752, 1296, 1401, 1831
TaqI	TCGA	5 cut(s)	330, 398, 471, 684, 918
TasI	AATT	7 cut(s)	649, 892, 1159, 1174, 1370, 1568, 1727
TfiI	GAWTC	4 cut(s)	4, 845, 1016, 1874
TscAI	CASTG	3 cut(s)	671, 1560, 1725
TseFI	GTSAC	2 cut(s)	745, 794
TseI	GCWGC	1 cut(s)	1925
Tsp45I	GTSAC	2 cut(s)	745, 794
TspDTI	ATGAA	2 cut(s)	1008, 1662
TspGWI	ACGGA	2 cut(s)	329, 490
TspRI	CASTG	3 cut(s)	671, 1560, 1725
Van91I	CCANNNNNTGG	1 cut(s)	1961
Vha464I	CTTAAG	3 cut(s)	926, 1091, 1460
VpaK11BI	GGWCC	4 cut(s)	1865, 1943, 1964, 2010
XagI	CCTNNNNNAGG	1 cut(s)	1971
XapI	RAATTY	2 cut(s)	892, 1568
XmiI	GTMKAC	1 cut(s)	1734
XmnI	GAANNNNTTC	1 cut(s)	1727
XspI	CTAG	5 cut(s)	50, 1320, 1506, 1794, 1812
Zsp2I	ATGCAT	1 cut(s)	1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.