Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Reverse (-)

12317142 .. 12317474

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTGGAGGTTGGTCTGCGAGTGGTTGCTAGTCTTGGTAAAAGGGTGTTCGATGAATTGATTAAGAACGGGAAGGCAGTAGACTGTGCACAGATTTTGAAGAAAATGGGAGAAAAAGATCCAAAACCAGATGCCAGTTTTTATGATGCTGTGATCAAGGGGGTTTGCAATGAAGGTGTGCTTGATACAGGCTGTGATTTACTGGAAGAGATGTTGAGATATGGCATTGGTGTTCCTCCAGAATTGCAGGATGTACGAGGGGTCCTCCGGAAAATTTCTAGCAACATTTTAGGATGGCCGAGGGGTCCTGGGACCTCCCAGGTCCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

111

Amino Acids

11.91

Weight (kDa)

6.25

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	267
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	307, 318
Alw21I	GWGCWC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	1 cut(s)	296
ApaLI	GTGCAC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	273
AspS9I	GGNCC	4 cut(s)	262, 305, 312, 322
AvaII	GGWCC	4 cut(s)	262, 305, 312, 322
BaeGI	GKGCMC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BccI	CCATC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	309, 320
BclI	TGATCA	1 cut(s)	153
BfaI	CTAG	2 cut(s)	30, 279
BfmI	CTRYAG	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	309, 320
Bme18I	GGWCC	4 cut(s)	262, 305, 312, 322
BmgT120I	GGNCC	4 cut(s)	262, 305, 312, 322
BmiI	GGNNCC	4 cut(s)	263, 306, 313, 324
BmrFI	CCNGG	2 cut(s)	309, 320
BmsI	GCATC	2 cut(s)	121, 136
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
BpmI	CTGGAG	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	299, 308, 318
BsaWI	WCCGGW	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	135, 207
Bse3DI	GCAATG	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	309, 320
BseDI	CCNNGG	3 cut(s)	299, 308, 318
BseGI	GGATG	2 cut(s)	256, 299
BseMI	GCAATG	1 cut(s)	175
BseNI	ACTGG	2 cut(s)	135, 207
BseSI	GKGCMC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	2 cut(s)	308, 325
BsmFI	GGGAC	2 cut(s)	308, 325
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	118, 153
BspANI	GGCC	1 cut(s)	298
BspEI	TCCGGA	1 cut(s)	267
BspLI	GGNNCC	4 cut(s)	263, 306, 313, 324
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	135, 207
BssECI	CCNNGG	3 cut(s)	299, 308, 318
BssMI	GATC	2 cut(s)	118, 153
Bst2UI	CCWGG	2 cut(s)	309, 320
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	256, 299
BstKTI	GATC	2 cut(s)	121, 156
BstMBI	GATC	2 cut(s)	118, 153
BstNI	CCWGG	2 cut(s)	309, 320
BstSCI	CCNGG	2 cut(s)	307, 318
BstSFI	CTRYAG	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	256, 299
Cfr13I	GGNCC	4 cut(s)	262, 305, 312, 322
Csp6I	GTAC	1 cut(s)	254
CviJI	RGCY	2 cut(s)	192, 298
CviKI_1	RGCY	2 cut(s)	192, 298
CviQI	GTAC	1 cut(s)	254
DpnI	GATC	2 cut(s)	120, 155
DpnII	GATC	2 cut(s)	118, 153
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco47I	GGWCC	4 cut(s)	262, 305, 312, 322
EcoO109I	RGGNCCY	4 cut(s)	262, 305, 312, 322
EcoRII	CCWGG	2 cut(s)	307, 318
FaiI	YATR	2 cut(s)	144, 222
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	308, 325
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	81
FokI	GGATG	2 cut(s)	263, 306
FspBI	CTAG	2 cut(s)	30, 279
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	268
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	82, 89
Hpy188III	TCNNGA	2 cut(s)	239, 268
Hpy8I	GTNNAC	2 cut(s)	82, 89
HpyAV	CCTTC	2 cut(s)	67, 167
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	89, 168, 247
Kpn2I	TCCGGA	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	118, 153
LweI	GCATC	2 cut(s)	121, 136
MaeI	CTAG	2 cut(s)	30, 279
MalI	GATC	2 cut(s)	120, 155
MboI	GATC	2 cut(s)	118, 153
MboII	GAAGA	2 cut(s)	112, 218
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	56, 242, 273
MnlI	CCTC	5 cut(s)	246, 251, 275, 294, 325
MroI	TCCGGA	1 cut(s)	267
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	309, 320
MvaI	CCWGG	2 cut(s)	309, 320
NdeII	GATC	2 cut(s)	118, 153
NlaIV	GGNNCC	4 cut(s)	263, 306, 313, 324
NmeAIII	GCCGAG	1 cut(s)	324
PpuMI	RGGWCCY	4 cut(s)	262, 305, 312, 322
Psp5II	RGGWCCY	4 cut(s)	262, 305, 312, 322
Psp6I	CCWGG	2 cut(s)	307, 318
PspGI	CCWGG	2 cut(s)	307, 318
PspN4I	GGNNCC	4 cut(s)	263, 306, 313, 324
PspPI	GGNCC	4 cut(s)	262, 305, 312, 322
PspPPI	RGGWCCY	4 cut(s)	262, 305, 312, 322
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	118, 153
Sau96I	GGNCC	4 cut(s)	262, 305, 312, 322
ScrFI	CCNGG	2 cut(s)	309, 320
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	12, 178, 317, 324
SfaNI	GCATC	2 cut(s)	121, 136
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	4 cut(s)	262, 305, 312, 322
Sse9I	AATT	3 cut(s)	56, 242, 273
SspMI	CTAG	2 cut(s)	30, 279
StyD4I	CCNGG	2 cut(s)	307, 318
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	56, 242, 273
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	69, 186
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	4 cut(s)	262, 305, 312, 322
XapI	RAATTY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	30, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.