Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8321059.1

Orthogroup ID

OG0003587

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 947

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8321059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 947 bp

ggcccgccgcctccgcgcgaccccaacgcgccccgtctccccgactcgacctccgccctcgtcggccctcgcctcaacctccacaaccgcgttcagtccctcatacgcgccggcgacctggacgccgcctctgccgtggcgcgccactccgtcttctccaacacgcgccccaccgtcttcacctgcaatgccatcatcgccgccatgtaccgcggcaagaggtacaatgacgctattgccctcttccacttctttttcaaccaatctaacattgttcccaacattgtatcttacaataatttgattaacactcactgtgatgagggccgtgtcgatgtgggtcttgagatttaccggcatatcattgccactgccccttttagtccctcgccggtgacgtaccggcatttgactaaagggttgattgatgccggtaggataggcgacgccgtggacttgttgagggagatgttgaataaggggcatggtgctgattctttggttttcaataacttgattaaggggttcttggatttggagaatttggacaaggccaatgagcttttcgacgagcttaaggagaggtgtttggtgtatgatggggttgtcaatgccacctttatggattggttcttcaataaggggaaagagaaggaggccatggattcatacaggtacttgcttgataggcagtttaggatgatcccagctacctgcaatgttctcttggaagtgttgcttaagcatggcaagaagaaggaggcatgggctttgtttgaacaaatgctggataatcacaccccgcccaatttccaggcagttaattccgagacttttaatataatggtcaatgagtgttttaagcttgggaagtttggtgaggcgtttgacaccttcaagaaggtgggaacaaatgtgaagtcaaagcctttttccatggacgttgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

316

Amino Acids

35.57

Weight (kDa)

7.81

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10270 AT3G60980
fragaria_vesca	FvH4_5g27880
malus_domestica	MD08G1246600.v1.1 MD15G1441500.v1.1
prunus_persica	Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1 Prupe.1G583600_v2.0.a1
pyrus_communis	pycom08g21380 pycom11g13110 pycom11g13120 pycom15g38950 pycom17g02590
rosa_chinensis	RchiOBHm_Chr3g0472581 RchiOBHm_Chr7g0220071
rosa_laevigata	RLG00000002259 RLG00000024069
rosa_multiflora	Rmu_co8321059.1_g000001 Rmu_sc0003510.1_g000024 Rmu_sc0003510.1_g000025 Rmu_sc0005838.1_g000004 Rmu_sc0007553.1_g000004 Rmu_sc0011581.1_g000008
rosa_roxburghii	Rroxscaffold_3G00239800 Rroxscaffold_6G00408800
rosa_rugosa	Rorug07G0188700
rosa_samantha	Rh3AG178600 Rh3BG204500 Rh3CG194900 Rh3CG201900 Rh7AG332400 Rh7BG322300 Rh7CG349900 Rh7DG328000
rosa_wichuraiana	Rw7G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
Acc36I	ACCTGC	2 cut(s)	191, 722
AccII	CGCG	8 cut(s)	16, 18, 29, 90, 108, 142, 166, 213
AclWI	GGATC	1 cut(s)	697
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	2 cut(s)	123, 447
AfaI	GTAC	4 cut(s)	209, 224, 401, 677
AflII	CTTAAG	2 cut(s)	575, 740
AgsI	TTSAA	6 cut(s)	259, 475, 508, 637, 779, 898
AjnI	CCWGG	2 cut(s)	117, 813
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	4 cut(s)	562, 574, 710, 865
AluI	AGCT	4 cut(s)	562, 574, 710, 865
Alw26I	GTCTC	2 cut(s)	41, 824
AlwI	GGATC	1 cut(s)	697
AoxI	GGCC	4 cut(s)	64, 325, 552, 657
ApoI	RAATTY	1 cut(s)	541
ArsI	GACNNNNNNTTYG	2 cut(s)	905, 937
AscI	GGCGCGCC	1 cut(s)	140
AspLEI	GCGC	6 cut(s)	18, 31, 110, 142, 144, 168
AspS9I	GGNCC	3 cut(s)	2, 65, 325
AsuHPI	GGTGA	3 cut(s)	172, 406, 890
BbsI	GAAGAC	2 cut(s)	145, 169
BccI	CCATC	2 cut(s)	200, 593
BceAI	ACGGC	3 cut(s)	119, 312, 434
BciT130I	CCWGG	2 cut(s)	119, 815
BcoDI	GTCTC	2 cut(s)	41, 824
BfrI	CTTAAG	2 cut(s)	575, 740
BfuAI	ACCTGC	2 cut(s)	191, 722
BisI	GCNGC	4 cut(s)	8, 126, 201, 214
BlsI	GCNGC	4 cut(s)	9, 127, 202, 215
Bme1390I	CCNGG	2 cut(s)	119, 815
BmgT120I	GGNCC	3 cut(s)	2, 65, 325
BmrFI	CCNGG	2 cut(s)	119, 815
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	2 cut(s)	145, 169
BpuEI	CTTGAG	1 cut(s)	365
BsaHI	GRCGYC	2 cut(s)	123, 447
BsaJI	CCNNGG	5 cut(s)	135, 211, 450, 660, 936
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse118I	RCCGGY	5 cut(s)	110, 354, 391, 402, 431
Bse3DI	GCAATG	3 cut(s)	193, 363, 724
BseBI	CCWGG	2 cut(s)	119, 815
BseDI	CCNNGG	5 cut(s)	135, 211, 450, 660, 936
BseGI	GGATG	1 cut(s)	705
BseMI	GCAATG	3 cut(s)	193, 363, 724
BsePI	GCGCGC	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	706
Bsh1236I	CGCG	8 cut(s)	16, 18, 29, 90, 108, 142, 166, 213
BshFI	GGCC	5 cut(s)	3, 66, 327, 554, 659
BsiSI	CCGG	5 cut(s)	111, 355, 392, 403, 432
BslFI	GGGAC	2 cut(s)	82, 369
BsmAI	GTCTC	2 cut(s)	41, 824
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	82, 369
BsnI	GGCC	5 cut(s)	3, 66, 327, 554, 659
Bsp143I	GATC	1 cut(s)	702
Bsp19I	CCATGG	2 cut(s)	660, 936
BspANI	GGCC	5 cut(s)	3, 66, 327, 554, 659
BspFNI	CGCG	8 cut(s)	16, 18, 29, 90, 108, 142, 166, 213
BspMI	ACCTGC	2 cut(s)	191, 722
BspPI	GGATC	1 cut(s)	697
BspTI	CTTAAG	2 cut(s)	575, 740
BsrDI	GCAATG	3 cut(s)	193, 363, 724
BsrFI	RCCGGY	5 cut(s)	110, 354, 391, 402, 431
BssAI	RCCGGY	5 cut(s)	110, 354, 391, 402, 431
BssECI	CCNNGG	5 cut(s)	135, 211, 450, 660, 936
BssHII	GCGCGC	1 cut(s)	140
BssMI	GATC	1 cut(s)	702
BssNI	GRCGYC	2 cut(s)	123, 447
BssT1I	CCWWGG	2 cut(s)	660, 936
Bst2UI	CCWGG	2 cut(s)	119, 815
Bst4CI	ACNGT	2 cut(s)	175, 317
Bst6I	CTCTTC	1 cut(s)	248
BstACI	GRCGYC	2 cut(s)	123, 447
BstAFI	CTTAAG	2 cut(s)	575, 740
BstC8I	GCNNGC	3 cut(s)	5, 112, 142
BstDSI	CCRYGG	5 cut(s)	135, 211, 450, 660, 936
BstF5I	GGATG	1 cut(s)	705
BstFNI	CGCG	8 cut(s)	16, 18, 29, 90, 108, 142, 166, 213
BstHHI	GCGC	6 cut(s)	18, 31, 110, 142, 144, 168
BstKTI	GATC	1 cut(s)	705
BstMAI	GTCTC	2 cut(s)	41, 824
BstMBI	GATC	1 cut(s)	702
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 131, 197, 688
BstNI	CCWGG	2 cut(s)	119, 815
BstSCI	CCNGG	2 cut(s)	117, 813
BstUI	CGCG	8 cut(s)	16, 18, 29, 90, 108, 142, 166, 213
BstV2I	GAAGAC	2 cut(s)	145, 169
BstXI	CCANNNNNNTGG	1 cut(s)	622
BsuRI	GGCC	5 cut(s)	3, 66, 327, 554, 659
BtgI	CCRYGG	5 cut(s)	135, 211, 450, 660, 936
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	705
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	313, 369
BveI	ACCTGC	2 cut(s)	191, 722
Cac8I	GCNNGC	3 cut(s)	5, 112, 142
CfoI	GCGC	6 cut(s)	18, 31, 110, 142, 144, 168
Cfr10I	RCCGGY	5 cut(s)	110, 354, 391, 402, 431
Cfr13I	GGNCC	3 cut(s)	2, 65, 325
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	3 cut(s)	131, 239, 455
Csp6I	GTAC	4 cut(s)	208, 223, 400, 676
CviAII	CATG	6 cut(s)	205, 485, 661, 746, 765, 937
CviQI	GTAC	4 cut(s)	208, 223, 400, 676
DpnI	GATC	1 cut(s)	704
DpnII	GATC	1 cut(s)	702
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	660, 936
EcoRII	CCWGG	2 cut(s)	117, 813
EcoT14I	CCWWGG	2 cut(s)	660, 936
ErhI	CCWWGG	2 cut(s)	660, 936
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	6 cut(s)	208, 488, 664, 749, 768, 940
FalI	AAGNNNNNCTT	4 cut(s)	512, 544, 723, 755
FaqI	GGGAC	2 cut(s)	82, 369
FatI	CATG	6 cut(s)	204, 484, 660, 745, 764, 936
FauI	CCCGC	2 cut(s)	12, 810
Fnu4HI	GCNGC	4 cut(s)	8, 126, 201, 214
FokI	GGATG	1 cut(s)	712
Fsp4HI	GCNGC	4 cut(s)	8, 126, 201, 214
GlaI	GCGC	6 cut(s)	17, 30, 109, 141, 143, 167
GluI	GCNGC	4 cut(s)	8, 126, 201, 214
GsaI	CCCAGC	1 cut(s)	710
HaeIII	GGCC	5 cut(s)	3, 66, 327, 554, 659
HapII	CCGG	5 cut(s)	111, 355, 392, 403, 432
HgaI	GACGC	3 cut(s)	131, 239, 455
HhaI	GCGC	6 cut(s)	18, 31, 110, 142, 144, 168
Hin1I	GRCGYC	2 cut(s)	123, 447
Hin1II	CATG	6 cut(s)	208, 488, 664, 749, 768, 940
Hin6I	GCGC	6 cut(s)	16, 29, 108, 140, 142, 166
HinP1I	GCGC	6 cut(s)	16, 29, 108, 140, 142, 166
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	3 cut(s)	44, 494, 665
HpaII	CCGG	5 cut(s)	111, 355, 392, 403, 432
HphI	GGTGA	3 cut(s)	172, 406, 890
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	1 cut(s)	829
Hpy188III	TCNNGA	2 cut(s)	344, 898
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	3 cut(s)	65, 449, 572
HpyAV	CCTTC	4 cut(s)	646, 751, 895, 904
HpyCH4III	ACNGT	2 cut(s)	175, 317
HpyCH4IV	ACGT	2 cut(s)	398, 942
HpyCH4V	TGCA	2 cut(s)	186, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 131, 197, 688
HpySE526I	ACGT	2 cut(s)	398, 942
Hsp92I	GRCGYC	2 cut(s)	123, 447
Hsp92II	CATG	6 cut(s)	208, 488, 664, 749, 768, 940
HspAI	GCGC	6 cut(s)	16, 29, 108, 140, 142, 166
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	702
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	2 cut(s)	398, 942
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	1 cut(s)	704
MboI	GATC	1 cut(s)	702
MboII	GAAGA	5 cut(s)	145, 169, 235, 625, 766
MluCI	AATT	4 cut(s)	298, 541, 808, 823
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	183
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	7 cut(s)	306, 519, 576, 741, 822, 837, 861
MslI	CAYNNNNRTG	2 cut(s)	318, 620
MspA1I	CMGCKG	1 cut(s)	213
MspCI	CTTAAG	2 cut(s)	575, 740
MspI	CCGG	5 cut(s)	111, 355, 392, 403, 432
MspR9I	CCNGG	2 cut(s)	119, 815
MvaI	CCWGG	2 cut(s)	119, 815
MvnI	CGCG	8 cut(s)	16, 18, 29, 90, 108, 142, 166, 213
MwoI	GCNNNNNNNGC	4 cut(s)	13, 131, 197, 688
NaeI	GCCGGC	1 cut(s)	112
NcoI	CCATGG	2 cut(s)	660, 936
NdeII	GATC	1 cut(s)	702
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	6 cut(s)	208, 488, 664, 749, 768, 940
NmuCI	GTSAC	1 cut(s)	394
PalAI	GGCGCGCC	1 cut(s)	140
PaqCI	CACCTGC	1 cut(s)	191
PauI	GCGCGC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	494, 665
PkrI	GCNGC	4 cut(s)	9, 127, 202, 215
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	117, 813
PspFI	CCCAGC	1 cut(s)	706
PspGI	CCWGG	2 cut(s)	117, 813
PspPI	GGNCC	3 cut(s)	2, 65, 325
PteI	GCGCGC	1 cut(s)	140
RsaI	GTAC	4 cut(s)	209, 224, 401, 677
RsaNI	GTAC	4 cut(s)	208, 223, 400, 676
RseI	CAYNNNNRTG	2 cut(s)	318, 620
SacII	CCGCGG	1 cut(s)	214
SaqAI	TTAA	7 cut(s)	306, 519, 576, 741, 822, 837, 861
SatI	GCNGC	4 cut(s)	8, 126, 201, 214
Sau3AI	GATC	1 cut(s)	702
Sau96I	GGNCC	3 cut(s)	2, 65, 325
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	119, 815
SfaNI	GCATC	1 cut(s)	418
Sfr303I	CCGCGG	1 cut(s)	214
SgrAI	CRCCGGYG	2 cut(s)	110, 391
SgrBI	CCGCGG	1 cut(s)	214
SgsI	GGCGCGCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	2 cut(s)	318, 620
SmlI	CTYRAG	3 cut(s)	344, 575, 740
SmoI	CTYRAG	3 cut(s)	344, 575, 740
Sse9I	AATT	4 cut(s)	298, 541, 808, 823
StyD4I	CCNGG	2 cut(s)	117, 813
StyI	CCWWGG	2 cut(s)	660, 936
TaaI	ACNGT	2 cut(s)	175, 317
TaiI	ACGT	2 cut(s)	401, 945
TaqI	TCGA	3 cut(s)	47, 333, 567
TasI	AATT	4 cut(s)	298, 541, 808, 823
TauI	GCSGC	4 cut(s)	10, 128, 203, 216
TfiI	GAWTC	2 cut(s)	494, 665
Tru1I	TTAA	7 cut(s)	306, 519, 576, 741, 822, 837, 861
Tru9I	TTAA	7 cut(s)	306, 519, 576, 741, 822, 837, 861
TscAI	CASTG	2 cut(s)	320, 376
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	320, 376
Vha464I	CTTAAG	2 cut(s)	575, 740
XapI	RAATTY	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.