AT3G61650

Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
22812082 .. 22815216
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61650.1

Sequence Viewer

Length: 1425 bp
ATGCCTCGGGAGATAATTACGCTTCAGGTTGGACAATGTGGGAATCAGATCGGTATGGAGTTCTGGAAACAGCTTTGCCTCGAGCACGGTATCAGTAAAGATGGTATTCTCGAGGACTTCGCTACTCAGGGAGGTGATAGAAAAGATGTGTTTTTTTACCAAGCGGATGACCAACACTATATCCCACGAGCTCTCCTCATTGATTTGGAGCCTAGAGTCATCAATGGTATTCAGAATGGTGATTACCGCAATCTCTATAATCACGAGAATATCTTCGTTGCTGACCATGGTGGTGGTGCTGGTAATAACTGGGCCAGTGGTTATCACCAGGGGAAGGGTGTTGAAGAGGAAATCATGGACATGATTGATCGAGAAGCTGATGGAAGTGACAGTCTTGAGGGTTTTGTTCTTTGCCACTCTATTGCTGGAGGCACTGGCTCAGGTATGGGATCTTATTTGTTGGAGACTTTGAATGATCGCTACAGCAAGAAGTTGGTTCAGACATACAGTGTCTTTCCCAATCAGATGGAAACGAGTGACGTTGTTGTCCAGCCCTACAACTCACTTTTGACGCTTAAGCGGCTTACATTAAATGCTGATTGTGTTGTTGTCCTTGACAACACTGCTTTGGGAAGGATTGCTGTGGAGCGTCTACATCTGACAAATCCTACCTTTGCTCAAACGAATTCTCTAGTGTCTACTGTGATGTCTGCTAGCACAACAACACTGCGTTATCCAGGATACATGAATAACGACCTCGTTGGCTTGCTTGCATCTTTGATCCCAACACCAAGGTGTCACTTCCTCATGACTGGATATACACCATTGACTGTTGAGCGCCAGGCAAATGTCATTCGTAAAACTACTGTGCTGGATGTTATGAGAAGACTTCTACAGACAAAAAATATCATGGTTTCGTCTTATGCTAGAAACAAAGAAGCTAGTCAGGCAAAGTATATATCAATATTGAATATAATTCAAGGAGAAGTCGATCCCACTCAGGTGCATGAGAGTTTGCAGAGGATACGAGAAAGAAAGCTTGTTAATTTCATTGAGTGGGGACCTGCAAGCATACAGGTTGCTCTTTCCAAGAAGTCCCCATATGTTCAAACTGCCCATAGGGTCAGTGGTCTTATGTTAGCAAGCCACACTAGTATCAGGCACCTATTCAGCAAATGTTTGAGCCAATATGATAAGTTGAGGAAGAAGCAAGCTTTTCTAGACAATTACCGGAAGTTTCCCATGTTTGCTGACAATGATCTTTCAGAGTTTGACGAATCAAGGGACATAATTGAGAGTTTGGTAGATGAATACAAGGCCTGTGAGTCTCCAGATTACATCAAATGGGGAATGGAGGACCCTGAACAGCTTATGACTGGTGAAGGCAATGCTTCAGGAGTTGTTGATCCGAAGTTGGCGTTCTGA

Protein Analysis

474

Amino Acids

53.25

Weight (kDa)

5.61

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 4 - 213 2.6e-61 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 264 - 393 3e-45 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 1072
AccB1I GGYRCC 1 cut(s) 1161
AccI GTMKAC 2 cut(s) 652, 698
AciI CCGC 3 cut(s) 164, 247, 580
AclWI GGATC 4 cut(s) 457, 775, 986, 1400
AcsI RAATTY 1 cut(s) 685
AcuI CTGAAG 2 cut(s) 8, 1377
AfiI CCNNNNNNNGG 1 cut(s) 334
AflII CTTAAG 1 cut(s) 575
AgsI TTSAA 5 cut(s) 344, 472, 970, 980, 1109
AhlI ACTAGT 1 cut(s) 1151
AjnI CCWGG 3 cut(s) 327, 736, 840
AleI CACNNNNGTG 2 cut(s) 793, 1001
AluBI AGCT 7 cut(s) 73, 191, 377, 941, 1039, 1214, 1369
AluI AGCT 7 cut(s) 73, 191, 377, 941, 1039, 1214, 1369
Alw21I GWGCWC 2 cut(s) 87, 193
Alw26I GTCTC 2 cut(s) 458, 1332
AlwI GGATC 4 cut(s) 457, 775, 986, 1400
Ama87I CYCGRG 3 cut(s) 6, 80, 110
AoxI GGCC 2 cut(s) 312, 1317
ApoI RAATTY 1 cut(s) 685
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 840
AspS9I GGNCC 3 cut(s) 312, 1061, 1357
AsuHPI GGTGA 4 cut(s) 146, 251, 317, 1391
AsuNHI GCTAGC 1 cut(s) 713
AvaI CYCGRG 3 cut(s) 6, 80, 110
AvaII GGWCC 2 cut(s) 1061, 1357
BaeI ACNNNNGTAYC 2 cut(s) 1138, 1171
BanI GGYRCC 1 cut(s) 1161
BanII GRGCYC 1 cut(s) 193
BauI CACGAG 2 cut(s) 186, 263
BbsI GAAGAC 1 cut(s) 892
Bbv12I GWGCWC 2 cut(s) 87, 193
BccI CCATC 3 cut(s) 95, 374, 520
BciT130I CCWGG 3 cut(s) 329, 738, 842
BciVI GTATCC 2 cut(s) 734, 1017
BcoDI GTCTC 2 cut(s) 458, 1332
BcuI ACTAGT 1 cut(s) 1151
BfaI CTAG 7 cut(s) 213, 692, 714, 927, 942, 1152, 1220
BfmI CTRYAG 2 cut(s) 481, 893
BfoI RGCGCY 1 cut(s) 841
BfrI CTTAAG 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 1072
BfuI GTATCC 2 cut(s) 734, 1017
BisI GCNGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 582
Bme1390I CCNGG 3 cut(s) 329, 738, 842
Bme18I GGWCC 2 cut(s) 1061, 1357
BmeT110I CYCGRG 3 cut(s) 6, 80, 110
BmgT120I GGNCC 3 cut(s) 312, 1061, 1357
BmiI GGNNCC 4 cut(s) 210, 1062, 1163, 1359
BmrFI CCNGG 3 cut(s) 329, 738, 842
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 782
BmtI GCTAGC 1 cut(s) 717
BmuI ACTGGG 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 892
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 2 cut(s) 447, 1314
Bpu10I CCTNAGC 1 cut(s) 439
BpuEI CTTGAG 1 cut(s) 416
BsaJI CCNNGG 4 cut(s) 5, 286, 328, 791
BsaWI WCCGGW 1 cut(s) 1230
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 5 cut(s) 314, 315, 439, 817, 1381
Bse3DI GCAATG 1 cut(s) 1393
BseBI CCWGG 3 cut(s) 329, 738, 842
BseDI CCNNGG 4 cut(s) 5, 286, 328, 791
BseGI GGATG 2 cut(s) 172, 880
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMI GCAATG 1 cut(s) 1393
BseMII CTCAG 3 cut(s) 140, 453, 1013
BseNI ACTGG 5 cut(s) 314, 315, 439, 817, 1381
BseRI GAGGAG 1 cut(s) 185
BshFI GGCC 2 cut(s) 314, 1319
BshNI GGYRCC 1 cut(s) 1161
BsiHKAI GWGCWC 2 cut(s) 87, 193
BsiHKCI CYCGRG 3 cut(s) 6, 80, 110
BsiSI CCGG 1 cut(s) 1231
BslFI GGGAC 3 cut(s) 1074, 1081, 1298
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 458, 1332
BsmFI GGGAC 3 cut(s) 1074, 1081, 1298
BsnI GGCC 2 cut(s) 314, 1319
BsoBI CYCGRG 3 cut(s) 6, 80, 110
Bsp1286I GDGCHC 2 cut(s) 87, 193
Bsp143I GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 3 cut(s) 164, 247, 580
BspANI GGCC 2 cut(s) 314, 1319
BspCNI CTCAG 3 cut(s) 139, 452, 1012
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 4 cut(s) 210, 1062, 1163, 1359
BspMI ACCTGC 1 cut(s) 1072
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 4 cut(s) 457, 775, 986, 1400
BspT107I GGYRCC 1 cut(s) 1161
BspTI CTTAAG 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 1393
BsrI ACTGG 5 cut(s) 314, 315, 439, 817, 1381
BssECI CCNNGG 4 cut(s) 5, 286, 328, 791
BssMI GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
BssSI CACGAG 2 cut(s) 186, 263
BssT1I CCWWGG 2 cut(s) 286, 791
Bst2BI CACGAG 2 cut(s) 186, 263
Bst2UI CCWGG 3 cut(s) 329, 738, 842
Bst4CI ACNGT 6 cut(s) 89, 392, 509, 703, 832, 868
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 575
BstC8I GCNNGC 6 cut(s) 715, 767, 771, 1069, 1144, 1212
BstDEI CTNAG 3 cut(s) 126, 439, 999
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 172, 880
BstH2I RGCGCY 1 cut(s) 841
BstHHI GCGC 1 cut(s) 840
BstKTI GATC 8 cut(s) 51, 370, 452, 478, 783, 994, 1261, 1408
BstMAI GTCTC 2 cut(s) 458, 1332
BstMBI GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
BstMWI GCNNNNNNNGC 2 cut(s) 580, 947
BstNI CCWGG 3 cut(s) 329, 738, 842
BstSCI CCNGG 3 cut(s) 327, 736, 840
BstSFI CTRYAG 2 cut(s) 481, 893
BstV2I GAAGAC 1 cut(s) 892
BstX2I RGATCY 1 cut(s) 449
BstXI CCANNNNNNTGG 2 cut(s) 293, 526
BstYI RGATCY 1 cut(s) 449
BsuI GTATCC 2 cut(s) 734, 1017
BsuRI GGCC 2 cut(s) 314, 1319
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 2 cut(s) 172, 880
BtsI GCAGTG 2 cut(s) 621, 725
BtsIMutI CAGTG 6 cut(s) 322, 432, 514, 621, 725, 1132
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 6 cut(s) 715, 767, 771, 1069, 1144, 1212
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 840
Cfr13I GGNCC 3 cut(s) 312, 1061, 1357
CseI GACGC 2 cut(s) 580, 638
CviAII CATG 8 cut(s) 287, 355, 361, 745, 808, 910, 1007, 1243
DdeI CTNAG 3 cut(s) 126, 439, 999
DpnI GATC 8 cut(s) 50, 369, 451, 477, 782, 993, 1260, 1407
DpnII GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
DrdI GACNNNNNNGTC 1 cut(s) 545
DseDI GACNNNNNNGTC 1 cut(s) 545
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 191
Eco130I CCWWGG 2 cut(s) 286, 791
Eco147I AGGCCT 1 cut(s) 1319
Eco24I GRGCYC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 1061, 1357
Eco53kI GAGCTC 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 8, 1377
Eco88I CYCGRG 3 cut(s) 6, 80, 110
EcoICRI GAGCTC 1 cut(s) 191
EcoO109I RGGNCCY 2 cut(s) 1061, 1357
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 327, 736, 840
EcoT14I CCWWGG 2 cut(s) 286, 791
EcoT38I GRGCYC 1 cut(s) 193
ErhI CCWWGG 2 cut(s) 286, 791
FaeI CATG 8 cut(s) 290, 358, 364, 748, 811, 913, 1010, 1246
FaqI GGGAC 3 cut(s) 1074, 1081, 1298
FatI CATG 8 cut(s) 286, 354, 360, 744, 807, 909, 1006, 1242
FauNDI CATATG 1 cut(s) 1102
FblI GTMKAC 2 cut(s) 652, 698
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 2 cut(s) 179, 887
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 581
FspBI CTAG 7 cut(s) 213, 692, 714, 927, 942, 1152, 1220
GlaI GCGC 1 cut(s) 839
GluI GCNGC 1 cut(s) 581
GsuI CTGGAG 2 cut(s) 447, 1314
HaeII RGCGCY 1 cut(s) 841
HaeIII GGCC 2 cut(s) 314, 1319
HapII CCGG 1 cut(s) 1231
HgaI GACGC 2 cut(s) 580, 638
HhaI GCGC 1 cut(s) 840
Hin1II CATG 8 cut(s) 290, 358, 364, 748, 811, 913, 1010, 1246
Hin6I GCGC 1 cut(s) 838
HinP1I GCGC 1 cut(s) 838
HindIII AAGCTT 2 cut(s) 1037, 1212
HinfI GANTC 4 cut(s) 43, 216, 1277, 1325
HpaII CCGG 1 cut(s) 1231
HphI GGTGA 4 cut(s) 146, 251, 317, 1391
Hpy166II GTNNAC 2 cut(s) 653, 699
Hpy188I TCNGA 8 cut(s) 48, 234, 501, 525, 660, 1267, 1410, 1424
Hpy8I GTNNAC 2 cut(s) 653, 699
HpyAV CCTTC 3 cut(s) 328, 627, 1376
HpyCH4III ACNGT 6 cut(s) 89, 392, 509, 703, 832, 868
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 4 cut(s) 773, 1006, 1018, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 580, 947
HpyF3I CTNAG 3 cut(s) 126, 439, 999
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 8 cut(s) 290, 358, 364, 748, 811, 913, 1010, 1246
HspAI GCGC 1 cut(s) 838
Kzo9I GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
LmnI GCTCC 2 cut(s) 208, 646
LweI GCATC 1 cut(s) 782
MaeI CTAG 7 cut(s) 213, 692, 714, 927, 942, 1152, 1220
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 3 cut(s) 386, 536, 797
MalI GATC 8 cut(s) 50, 369, 451, 477, 782, 993, 1260, 1407
MboI GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
MboII GAAGA 4 cut(s) 265, 356, 897, 1216
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 2 cut(s) 87, 193
MluCI AATT 6 cut(s) 15, 685, 975, 1045, 1225, 1290
MlyI GAGTC 2 cut(s) 225, 1334
MmeI TCCRAC 2 cut(s) 10, 441
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 3 cut(s) 576, 590, 1044
MslI CAYNNNNRTG 4 cut(s) 291, 359, 793, 1001
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 1 cut(s) 1231
MspR9I CCNGG 3 cut(s) 329, 738, 842
MvaI CCWGG 3 cut(s) 329, 738, 842
MwoI GCNNNNNNNGC 2 cut(s) 580, 947
NcoI CCATGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 1102
NdeII GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 8 cut(s) 290, 358, 364, 748, 811, 913, 1010, 1246
NlaIV GGNNCC 4 cut(s) 210, 1062, 1163, 1359
NmuCI GTSAC 3 cut(s) 386, 536, 797
OliI CACNNNNGTG 2 cut(s) 793, 1001
PaeR7I CTCGAG 2 cut(s) 80, 110
PagI TCATGA 1 cut(s) 807
PceI AGGCCT 1 cut(s) 1319
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 43, 1277
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 1 cut(s) 582
PleI GAGTC 2 cut(s) 224, 1333
PpsI GAGTC 2 cut(s) 224, 1333
PpuMI RGGWCCY 2 cut(s) 1061, 1357
Psp124BI GAGCTC 1 cut(s) 193
Psp5II RGGWCCY 2 cut(s) 1061, 1357
Psp6I CCWGG 3 cut(s) 327, 736, 840
PspGI CCWGG 3 cut(s) 327, 736, 840
PspN4I GGNNCC 4 cut(s) 210, 1062, 1163, 1359
PspPI GGNCC 3 cut(s) 312, 1061, 1357
PspPPI RGGWCCY 2 cut(s) 1061, 1357
PspXI VCTCGAGB 1 cut(s) 80
PsuI RGATCY 1 cut(s) 449
RseI CAYNNNNRTG 4 cut(s) 291, 359, 793, 1001
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 3 cut(s) 576, 590, 1044
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 8 cut(s) 48, 367, 449, 475, 780, 991, 1258, 1405
Sau96I GGNCC 3 cut(s) 312, 1061, 1357
SchI GAGTC 2 cut(s) 225, 1334
ScrFI CCNGG 3 cut(s) 329, 738, 842
SduI GDGCHC 2 cut(s) 87, 193
SfaNI GCATC 1 cut(s) 782
SfcI CTRYAG 2 cut(s) 481, 893
Sfr274I CTCGAG 2 cut(s) 80, 110
SinI GGWCC 2 cut(s) 1061, 1357
SlaI CTCGAG 2 cut(s) 80, 110
SmiMI CAYNNNNRTG 4 cut(s) 291, 359, 793, 1001
SmlI CTYRAG 4 cut(s) 80, 110, 395, 575
SmoI CTYRAG 4 cut(s) 80, 110, 395, 575
SpeI ACTAGT 1 cut(s) 1151
Sse9I AATT 6 cut(s) 15, 685, 975, 1045, 1225, 1290
SseBI AGGCCT 1 cut(s) 1319
SsiI CCGC 3 cut(s) 164, 247, 580
SspI AATATT 1 cut(s) 966
SspMI CTAG 7 cut(s) 213, 692, 714, 927, 942, 1152, 1220
SstI GAGCTC 1 cut(s) 193
StuI AGGCCT 1 cut(s) 1319
StyD4I CCNGG 3 cut(s) 327, 736, 840
StyI CCWWGG 2 cut(s) 286, 791
TaaI ACNGT 6 cut(s) 89, 392, 509, 703, 832, 868
TaiI ACGT 1 cut(s) 543
TaqI TCGA 4 cut(s) 81, 111, 370, 990
TasI AATT 6 cut(s) 15, 685, 975, 1045, 1225, 1290
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 2 cut(s) 43, 1277
Tru1I TTAA 3 cut(s) 576, 590, 1044
Tru9I TTAA 3 cut(s) 576, 590, 1044
TscAI CASTG 6 cut(s) 322, 439, 514, 628, 732, 1132
TseFI GTSAC 3 cut(s) 386, 536, 797
Tsp45I GTSAC 3 cut(s) 386, 536, 797
TspDTI ATGAA 3 cut(s) 761, 1039, 1323
TspRI CASTG 6 cut(s) 322, 439, 514, 628, 732, 1132
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 2 cut(s) 1061, 1357
XapI RAATTY 1 cut(s) 685
XbaI TCTAGA 1 cut(s) 1219
XcmI CCANNNNNNNNNTGG 2 cut(s) 422, 1124
XhoI CTCGAG 2 cut(s) 80, 110
XmiI GTMKAC 2 cut(s) 652, 698
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 7 cut(s) 213, 692, 714, 927, 942, 1152, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.