Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Reverse (-)

50787105 .. 50793466

Gene Structure 6362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGCCTCGGGAGATCATCACATTGCAGGTGGGACAATGCGGCAACCAGATCGGAATGGAGTTCTGGAAGCAGCTCTGCCTCGAGCACGGTATCAGCAAAGAAGGCATTCTCGAAGACTTTGCCACTCAGGGAGGGGACAGAAAAGATGTGTTTTTCTACCAAGCTGATGATCAGCACTACATACCACGAGCTTTGCTGATTGATTTGGAGCCCAGAGTGATAAATGGTATTCAGAACAGTGACTATCGAAACCTCTACAATCATGAGAACATCTATGTTGCAGATCATGGAGGTGGTGCAGGAAATAATTGGGCCAGTGGATATGATCAGGGAAAAGGTGTTGAAGAGGCCATAATGGACATGATTGATAGAGAAGCAGATGGGAGTGATAGTCTTGAAGGATTTGTTCTTTGCCATTCAATTGCTGGTGGAACAGGCTCAGGAATGGGTTCCTATCTGTTGGAGACTTTGAATGATCGATACAGCAAAAAACTGGTTCAGACATACAGTGTATTTCCTAACCAGATGGAAACAAGTGATGTGGTGGTCCAGCCCTATAACTCACTTTTGACACTTAAGCGACTAACTCTGAATGCTGATTGTGTTGTTGTCCTTGATAACACTGCATTGAATAGAATCGCTGTCGAGCGCCTCCATCTCACAAATCCCACCTTTGCTCAAACAAATTCTTTGGTTTCTACTGTAATGTCTGCCAGCACAACCACTCTGAGATATCCAGGGTACATGAACAACGACTTGGTTGGTCTTCTTGCATCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGATATACACCCCTCACAGTCGAGCGCCAGGCTAATGTGATTCGTAAAACCACTGTACTTGATGTTATGAGAAGACTTCTGCAGACAAAAAATATCATGGTTTCCTCGTATGCTCGAACAAAAGAAGCCAGTCAAGCAAAGTATATATCGATATTAAACATCATTCAAGGAGAAGTAGACCCTACTCAGGTTCATGAAAGTTTGCAGAGGATACGCGAAAGAAAGCTTGTTAACTTTATTGAGTGGGGCCCTGCAAGCATTCAGGTTGCTTTGTCTAGGAAGTCTCCATATGTACAAACTGCCCATAGGGTCAGTGGTCTTATGCTAGCCAGCCATACTAGTATTCGCCACCTTTTCAGCAAGTGTTTGAGCCAGTATTCGTTGTTAAGAAAGAAGCAAGCTTTTCTTGACAACTACCGGAAGTTCCCTATGTTTGCTGAGAATGACCTTTCAGAATTTGATGAATCAAGAGAAATACTTGAGAGTTTGGTTGATGAATATAAGGCCTGTGAGTCCCCAGATTACATCAAATGGGGAATGGAGGATCCAGACCACTATGAACAATTTAGGATTGGAAAACACAGCGATCTATCTAAGTGCTGGTGCCAAAAGTACATTTGGAGGGAGCATTCTTGCTTTGCTTTTTCCAAGGCCATTTTCCGACTTCTGGCAGTGCTGGCACTCCTCTTCTTGGCTTCTGCCTCTGCCTCAAGGGCTCCTGCTGCTTCCCCGCTAGCTGCTCCTGCTCCTGCTCCTGTTCTCACTGGTGATGGGACTTCAATAGATCAGGGGATTGCGTATGTGCTGATGCTGGTGGCTTTGGTGCTCACATATCTCATTCATCCTTTGGATGCATCATCCTACAACTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

562

Amino Acids

63.07

Weight (kDa)

6.03

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	4 - 214	2.1e-60	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	264 - 393	1e-44	Tubulin C-terminal domain
AGP	PF06376	518 - 552	5.8e-16	Arabinogalactan peptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	1416
AccI	GTMKAC	1 cut(s)	990
AccII	CGCG	1 cut(s)	1029
AciI	CCGC	2 cut(s)	39, 1544
AclWI	GGATC	2 cut(s)	1352, 1365
AcsI	RAATTY	2 cut(s)	685, 1268
AfaI	GTAC	4 cut(s)	743, 870, 1107, 1427
AfiI	CCNNNNNNNGG	3 cut(s)	1000, 1480, 1504
AflII	CTTAAG	1 cut(s)	575
AgsI	TTSAA	7 cut(s)	344, 398, 420, 472, 631, 980, 1593
AhlI	ACTAGT	1 cut(s)	1151
AjnI	CCWGG	2 cut(s)	736, 840
AjuI	GAANNNNNNNTTGG	4 cut(s)	740, 772, 1454, 1486
AluBI	AGCT	6 cut(s)	73, 164, 191, 1039, 1214, 1550
AluI	AGCT	6 cut(s)	73, 164, 191, 1039, 1214, 1550
Alw21I	GWGCWC	2 cut(s)	87, 1641
Alw26I	GTCTC	2 cut(s)	458, 1101
AlwI	GGATC	2 cut(s)	1352, 1365
Ama87I	CYCGRG	2 cut(s)	6, 80
AoxI	GGCC	5 cut(s)	312, 348, 1060, 1317, 1464
ApaI	GGGCCC	1 cut(s)	1064
ApeKI	GCWGC	3 cut(s)	70, 1535, 1550
ApoI	RAATTY	2 cut(s)	685, 1268
Asp700I	GAANNNNTTC	2 cut(s)	105, 448
AspLEI	GCGC	2 cut(s)	651, 840
AspS9I	GGNCC	4 cut(s)	312, 547, 1060, 1061
AsuHPI	GGTGA	1 cut(s)	1592
AsuNHI	GCTAGC	2 cut(s)	1138, 1546
AvaI	CYCGRG	2 cut(s)	6, 80
AvaII	GGWCC	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	1064
BamHI	GGATCC	1 cut(s)	1357
BanI	GGYRCC	1 cut(s)	1416
BanII	GRGCYC	3 cut(s)	213, 1064, 1531
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	3 cut(s)	120, 758, 892
Bbv12I	GWGCWC	2 cut(s)	87, 1641
BbvI	GCAGC	3 cut(s)	82, 1522, 1537
BccI	CCATC	4 cut(s)	374, 520, 663, 1577
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 101, 135
BciT130I	CCWGG	2 cut(s)	738, 842
BciVI	GTATCC	1 cut(s)	1017
BclI	TGATCA	2 cut(s)	169, 325
BcoDI	GTCTC	2 cut(s)	458, 1101
BcuI	ACTAGT	1 cut(s)	1151
BfaI	CTAG	4 cut(s)	1089, 1139, 1152, 1547
BfmI	CTRYAG	1 cut(s)	893
BfoI	RGCGCY	2 cut(s)	652, 841
BfrI	CTTAAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	1017
BglI	GCCNNNNNGGC	1 cut(s)	1526
BisI	GCNGC	4 cut(s)	40, 71, 1536, 1551
BlsI	GCNGC	4 cut(s)	41, 72, 1537, 1552
Bme1390I	CCNGG	2 cut(s)	738, 842
Bme18I	GGWCC	1 cut(s)	547
BmeT110I	CYCGRG	2 cut(s)	6, 80
BmgT120I	GGNCC	4 cut(s)	312, 547, 1060, 1061
BmiI	GGNNCC	7 cut(s)	210, 451, 1061, 1062, 1359, 1418, 1530
BmrFI	CCNGG	2 cut(s)	738, 842
BmsI	GCATC	5 cut(s)	782, 785, 1611, 1654, 1676
BmtI	GCTAGC	2 cut(s)	1142, 1550
BpiI	GAAGAC	3 cut(s)	120, 758, 892
Bpu10I	CCTNAGC	1 cut(s)	439
BpuEI	CTTGAG	2 cut(s)	1313, 1507
Bsa29I	ATCGAT	2 cut(s)	478, 962
BsaJI	CCNNGG	3 cut(s)	5, 737, 1461
BsaWI	WCCGGW	1 cut(s)	1230
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	1000, 1480, 1504
Bse1I	ACTGG	5 cut(s)	315, 498, 942, 1186, 1582
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	738, 842
BseCI	ATCGAT	2 cut(s)	478, 962
BseDI	CCNNGG	3 cut(s)	5, 737, 1461
BseGI	GGATG	3 cut(s)	1654, 1669, 1670
BseLI	CCNNNNNNNGG	3 cut(s)	1000, 1480, 1504
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	5 cut(s)	140, 453, 719, 1013, 1242
BseNI	ACTGG	5 cut(s)	315, 498, 942, 1186, 1582
BseRI	GAGGAG	1 cut(s)	1487
BseSI	GKGCMC	1 cut(s)	1064
BseXI	GCAGC	3 cut(s)	82, 1522, 1537
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	1029
BshFI	GGCC	5 cut(s)	314, 350, 1062, 1319, 1466
BshNI	GGYRCC	1 cut(s)	1416
BshVI	ATCGAT	2 cut(s)	478, 962
BsiHKAI	GWGCWC	2 cut(s)	87, 1641
BsiHKCI	CYCGRG	2 cut(s)	6, 80
BsiSI	CCGG	1 cut(s)	1231
BslFI	GGGAC	4 cut(s)	45, 149, 1312, 1600
BslI	CCNNNNNNNGG	3 cut(s)	1000, 1480, 1504
BsmAI	GTCTC	2 cut(s)	458, 1101
BsmFI	GGGAC	4 cut(s)	45, 149, 1312, 1600
BsmI	GAATGC	4 cut(s)	105, 598, 1071, 1441
BsnI	GGCC	5 cut(s)	314, 350, 1062, 1319, 1466
BsoBI	CYCGRG	2 cut(s)	6, 80
Bsp120I	GGGCCC	1 cut(s)	1060
Bsp1286I	GDGCHC	5 cut(s)	87, 213, 1064, 1531, 1641
Bsp1407I	TGTACA	1 cut(s)	1105
Bsp143I	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
BspACI	CCGC	2 cut(s)	39, 1544
BspANI	GGCC	5 cut(s)	314, 350, 1062, 1319, 1466
BspCNI	CTCAG	5 cut(s)	139, 452, 720, 1012, 1243
BspDI	ATCGAT	2 cut(s)	478, 962
BspFNI	CGCG	1 cut(s)	1029
BspHI	TCATGA	2 cut(s)	262, 1006
BspLI	GGNNCC	7 cut(s)	210, 451, 1061, 1062, 1359, 1418, 1530
BspMAI	CTGCAG	1 cut(s)	897
BspMI	ACCTGC	1 cut(s)	16
BspOI	GCTAGC	2 cut(s)	1142, 1550
BspPI	GGATC	2 cut(s)	1352, 1365
BspT107I	GGYRCC	1 cut(s)	1416
BspTI	CTTAAG	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	1105
BsrI	ACTGG	5 cut(s)	315, 498, 942, 1186, 1582
BssECI	CCNNGG	3 cut(s)	5, 737, 1461
BssMI	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	1461
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	738, 842
Bst4CI	ACNGT	6 cut(s)	89, 239, 509, 703, 832, 868
Bst6I	CTCTTC	2 cut(s)	339, 1505
BstAFI	CTTAAG	1 cut(s)	575
BstAUI	TGTACA	1 cut(s)	1105
BstC8I	GCNNGC	7 cut(s)	715, 1069, 1140, 1144, 1212, 1491, 1548
BstDEI	CTNAG	6 cut(s)	126, 439, 728, 999, 1251, 1407
BstF5I	GGATG	3 cut(s)	1654, 1669, 1670
BstFNI	CGCG	1 cut(s)	1029
BstH2I	RGCGCY	2 cut(s)	652, 841
BstHHI	GCGC	2 cut(s)	651, 840
BstKTI	GATC	9 cut(s)	15, 51, 172, 286, 328, 478, 1360, 1402, 1600
BstMAI	GTCTC	2 cut(s)	458, 1101
BstMBI	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
BstMWI	GCNNNNNNNGC	7 cut(s)	102, 947, 1068, 1490, 1526, 1535, 1556
BstNI	CCWGG	2 cut(s)	738, 842
BstSCI	CCNGG	2 cut(s)	736, 840
BstSFI	CTRYAG	1 cut(s)	893
BstSLI	GKGCMC	1 cut(s)	1064
BstUI	CGCG	1 cut(s)	1029
BstV1I	GCAGC	3 cut(s)	82, 1522, 1537
BstV2I	GAAGAC	3 cut(s)	120, 758, 892
BstX2I	RGATCY	1 cut(s)	1357
BstYI	RGATCY	1 cut(s)	1357
Bsu15I	ATCGAT	2 cut(s)	478, 962
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	5 cut(s)	314, 350, 1062, 1319, 1466
BsuTUI	ATCGAT	2 cut(s)	478, 962
BtsCI	GGATG	3 cut(s)	1654, 1669, 1670
BtsI	GCAGTG	2 cut(s)	621, 1491
BtsIMutI	CAGTG	8 cut(s)	244, 322, 514, 621, 864, 1132, 1491, 1575
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	7 cut(s)	715, 1069, 1140, 1144, 1212, 1491, 1548
CciI	TCATGA	2 cut(s)	262, 1006
CfoI	GCGC	2 cut(s)	651, 840
Cfr13I	GGNCC	4 cut(s)	312, 547, 1060, 1061
ClaI	ATCGAT	2 cut(s)	478, 962
Csp6I	GTAC	4 cut(s)	742, 869, 1106, 1426
CspCI	CAANNNNNGTGG	6 cut(s)	174, 209, 522, 557, 853, 888
CviAII	CATG	6 cut(s)	263, 287, 361, 745, 910, 1007
CviQI	GTAC	4 cut(s)	742, 869, 1106, 1426
DdeI	CTNAG	6 cut(s)	126, 439, 728, 999, 1251, 1407
DpnI	GATC	9 cut(s)	14, 50, 171, 285, 327, 477, 1359, 1401, 1599
DpnII	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
Eam1104I	CTCTTC	2 cut(s)	339, 1505
EarI	CTCTTC	2 cut(s)	339, 1505
Eco130I	CCWWGG	1 cut(s)	1461
Eco147I	AGGCCT	1 cut(s)	1319
Eco24I	GRGCYC	3 cut(s)	213, 1064, 1531
Eco32I	GATATC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	547
Eco88I	CYCGRG	2 cut(s)	6, 80
EcoO109I	RGGNCCY	2 cut(s)	1060, 1061
EcoRII	CCWGG	2 cut(s)	736, 840
EcoRV	GATATC	1 cut(s)	734
EcoT14I	CCWWGG	1 cut(s)	1461
EcoT22I	ATGCAT	1 cut(s)	1669
EcoT38I	GRGCYC	3 cut(s)	213, 1064, 1531
ErhI	CCWWGG	1 cut(s)	1461
FaeI	CATG	6 cut(s)	266, 290, 364, 748, 913, 1010
FalI	AAGNNNNNCTT	2 cut(s)	1203, 1235
FaqI	GGGAC	4 cut(s)	45, 149, 1312, 1600
FatI	CATG	6 cut(s)	262, 286, 360, 744, 909, 1006
FauI	CCCGC	1 cut(s)	1551
FauNDI	CATATG	1 cut(s)	1102
FbaI	TGATCA	2 cut(s)	169, 325
FblI	GTMKAC	1 cut(s)	990
Fnu4HI	GCNGC	4 cut(s)	40, 71, 1536, 1551
FokI	GGATG	3 cut(s)	1641, 1657, 1676
FriOI	GRGCYC	3 cut(s)	213, 1064, 1531
Fsp4HI	GCNGC	4 cut(s)	40, 71, 1536, 1551
FspBI	CTAG	4 cut(s)	1089, 1139, 1152, 1547
GlaI	GCGC	2 cut(s)	650, 839
GluI	GCNGC	4 cut(s)	40, 71, 1536, 1551
HaeII	RGCGCY	2 cut(s)	652, 841
HaeIII	GGCC	5 cut(s)	314, 350, 1062, 1319, 1466
HapII	CCGG	1 cut(s)	1231
HhaI	GCGC	2 cut(s)	651, 840
Hin1II	CATG	6 cut(s)	266, 290, 364, 748, 913, 1010
Hin6I	GCGC	2 cut(s)	649, 838
HinP1I	GCGC	2 cut(s)	649, 838
HincII	GTYRAC	1 cut(s)	1045
HindII	GTYRAC	1 cut(s)	1045
HindIII	AAGCTT	2 cut(s)	1037, 1212
HinfI	GANTC	5 cut(s)	636, 781, 853, 1277, 1325
HpaI	GTTAAC	1 cut(s)	1045
HpaII	CCGG	1 cut(s)	1231
HphI	GGTGA	1 cut(s)	1592
Hpy166II	GTNNAC	2 cut(s)	991, 1045
Hpy188I	TCNGA	7 cut(s)	53, 234, 501, 591, 729, 1267, 1475
Hpy8I	GTNNAC	2 cut(s)	991, 1045
HpyAV	CCTTC	2 cut(s)	95, 392
HpyCH4III	ACNGT	6 cut(s)	89, 239, 509, 703, 832, 868
HpyCH4V	TGCA	9 cut(s)	25, 281, 299, 626, 773, 895, 1018, 1067, 1667
HpyF10VI	GCNNNNNNNGC	7 cut(s)	102, 947, 1068, 1490, 1526, 1535, 1556
HpyF3I	CTNAG	6 cut(s)	126, 439, 728, 999, 1251, 1407
Hsp92II	CATG	6 cut(s)	266, 290, 364, 748, 913, 1010
HspAI	GCGC	2 cut(s)	649, 838
Ksp22I	TGATCA	2 cut(s)	169, 325
KspAI	GTTAAC	1 cut(s)	1045
Kzo9I	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
LmnI	GCTCC	6 cut(s)	208, 1438, 1534, 1558, 1564, 1570
Lsp1109I	GCAGC	3 cut(s)	82, 1522, 1537
LweI	GCATC	5 cut(s)	782, 785, 1611, 1654, 1676
MaeI	CTAG	4 cut(s)	1089, 1139, 1152, 1547
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	9 cut(s)	14, 50, 171, 285, 327, 477, 1359, 1401, 1599
MboI	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
MboII	GAAGA	5 cut(s)	125, 356, 758, 897, 1492
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	1357
MhlI	GDGCHC	5 cut(s)	87, 213, 1064, 1531, 1641
MluCI	AATT	5 cut(s)	307, 420, 685, 1268, 1376
MlyI	GAGTC	1 cut(s)	1334
MmeI	TCCRAC	3 cut(s)	441, 809, 1498
Mph1103I	ATGCAT	1 cut(s)	1669
MroXI	GAANNNNTTC	2 cut(s)	105, 448
MseI	TTAA	4 cut(s)	576, 968, 1044, 1199
MslI	CAYNNNNRTG	2 cut(s)	291, 793
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	1 cut(s)	1231
MspR9I	CCNGG	2 cut(s)	738, 842
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	4 cut(s)	105, 598, 1071, 1441
MvaI	CCWGG	2 cut(s)	738, 842
MvnI	CGCG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	7 cut(s)	102, 947, 1068, 1490, 1526, 1535, 1556
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
NheI	GCTAGC	2 cut(s)	1138, 1546
NlaIII	CATG	6 cut(s)	266, 290, 364, 748, 913, 1010
NlaIV	GGNNCC	7 cut(s)	210, 451, 1061, 1062, 1359, 1418, 1530
NmuCI	GTSAC	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	1669
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	2 cut(s)	262, 1006
PaqCI	CACCTGC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	1319
PctI	GAATGC	4 cut(s)	105, 598, 1071, 1441
PdmI	GAANNNNTTC	2 cut(s)	105, 448
PfeI	GAWTC	4 cut(s)	636, 781, 853, 1277
PkrI	GCNGC	4 cut(s)	41, 72, 1537, 1552
PleI	GAGTC	1 cut(s)	1333
PpsI	GAGTC	1 cut(s)	1333
Psp6I	CCWGG	2 cut(s)	736, 840
PspGI	CCWGG	2 cut(s)	736, 840
PspN4I	GGNNCC	7 cut(s)	210, 451, 1061, 1062, 1359, 1418, 1530
PspOMI	GGGCCC	1 cut(s)	1060
PspPI	GGNCC	4 cut(s)	312, 547, 1060, 1061
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	1357
RsaI	GTAC	4 cut(s)	743, 870, 1107, 1427
RsaNI	GTAC	4 cut(s)	742, 869, 1106, 1426
RseI	CAYNNNNRTG	2 cut(s)	291, 793
SaqAI	TTAA	4 cut(s)	576, 968, 1044, 1199
SatI	GCNGC	4 cut(s)	40, 71, 1536, 1551
Sau3AI	GATC	9 cut(s)	12, 48, 169, 283, 325, 475, 1357, 1399, 1597
Sau96I	GGNCC	4 cut(s)	312, 547, 1060, 1061
SchI	GAGTC	1 cut(s)	1334
ScrFI	CCNGG	2 cut(s)	738, 842
SduI	GDGCHC	5 cut(s)	87, 213, 1064, 1531, 1641
SfaNI	GCATC	5 cut(s)	782, 785, 1611, 1654, 1676
SfcI	CTRYAG	1 cut(s)	893
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	291, 793
SmlI	CTYRAG	4 cut(s)	80, 575, 1292, 1522
SmoI	CTYRAG	4 cut(s)	80, 575, 1292, 1522
SpeI	ACTAGT	1 cut(s)	1151
Sse9I	AATT	5 cut(s)	307, 420, 685, 1268, 1376
SseBI	AGGCCT	1 cut(s)	1319
SsiI	CCGC	2 cut(s)	39, 1544
SspMI	CTAG	4 cut(s)	1089, 1139, 1152, 1547
StuI	AGGCCT	1 cut(s)	1319
StyD4I	CCNGG	2 cut(s)	736, 840
StyI	CCWWGG	1 cut(s)	1461
TaaI	ACNGT	6 cut(s)	89, 239, 509, 703, 832, 868
TaqI	TCGA	8 cut(s)	81, 111, 247, 478, 645, 834, 928, 962
TasI	AATT	5 cut(s)	307, 420, 685, 1268, 1376
TatI	WGTACW	3 cut(s)	868, 1105, 1425
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	636, 781, 853, 1277
Tru1I	TTAA	4 cut(s)	576, 968, 1044, 1199
Tru9I	TTAA	4 cut(s)	576, 968, 1044, 1199
TscAI	CASTG	8 cut(s)	244, 322, 514, 628, 871, 1132, 1491, 1582
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	3 cut(s)	70, 1535, 1550
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	7 cut(s)	761, 995, 1023, 1290, 1323, 1386, 1643
TspRI	CASTG	8 cut(s)	244, 322, 514, 628, 871, 1132, 1491, 1582
Vha464I	CTTAAG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	2 cut(s)	685, 1268
XcmI	CCANNNNNNNNNTGG	2 cut(s)	422, 1124
XhoI	CTCGAG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	990
XmnI	GAANNNNTTC	2 cut(s)	105, 448
XspI	CTAG	4 cut(s)	1089, 1139, 1152, 1547
Zsp2I	ATGCAT	1 cut(s)	1669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.