Prupe.1G559600_v2.0.a1

Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
45683183 .. 45687742
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G559600.5

Sequence Viewer

Length: 1527 bp
ATGCCGAGAGAGATCATCACATTGCAGGTCGGACAATGCGGGAATCAGATCGGCATGGAGTTCTGGAAACAACTCTGCCTCGAGCATGGAATCAGCAAAGAAGGAATTCTCGAGGACTTTGCCACTCAGGGTGGAGATCGGAAAGATGTGTTTTTCTATCAAGCTGATGATCAGCACTACATACCGCGAGCTTTGCTGATTGACCTGGAGCCAAGAGTAATTAATGGTATTCAAAACAGTGAATATCGAAATCTCTACAATCATGAAAACATCTTTGTTTCAGATCATGGAGGTGGCGCAGGAAATAATTGGGCCAGTGGATATGATCAGGGAAAGGGTGTTGAAGAGGCTATAATGGACATGATTGATAGAGAAGCTGATGGGAGTGATAGTCTTGAAGGATTTGTTCTGTGCCATTCAATTGCTGGAGGAACAGGCTCAGGCATGGGTTCCTATCTATTGGAGACTTTGAATGATCGATACAGCAAAAAACTGGTTCAGACATACAGTGTATTTCCTAACCAGATGGAAACAAGTGATGTGGTGGTCCAGCCCTATAACTCACTTTTGACGCTTAAACGTCTAACGCTTAATGCTGATTGTGTTGTGGTCCTTGATAACACTGCATTGAATAGAATTGCTGTTGAGCGCCTTCATTTAACAAATCCAACCTTTGCTCAAACAAATTCTTTGGTTTCTACTGTAATGTCTGCCAGCACAACCACTCTGAGATATCCAGGATACATGAACAATGACTTGGTTGGTCTTCTTGCATCTTTAATTCCAACACCAAGATGCCATTTTCTAATGACAGGGTATACACCTCTCACAGTTGAGCGCCAGGCTAATGTAATACGGAAAACCACTGTACTTGATGTTATGAGAAGACTTCTGCAGACAAAAAATATAATGGTTTCCTCATATGCTCGAACAAAAGAAGCTAGTCAAGCGAAGTACATATCAATATTAAACATCATTCAAGGAGAAGTTGACCCTACTCAGGTTCATGAAAGTTTGCAGAGGATACGTGAAAGAAAGCTTGTTAACTTTATTGAATGGGGCCCTGCAAGCATTCAGGTTGCTTTGTCTAGAAAGTCTCCATATGTGCAAACGGCCCATAGGGTCAGTGGTCTTATGCTGGCAAGCCATACAAGTATTCGTCACCTTTTCAGTAAGTGTTTGAGCCAGTATTTGATGCTAAGAAAGAAGCAAGCCTTTCTTGACAACTATCGGAAGTTCCCAATGTTTGCAGAGAATGACCTTTCAGAATTTGACGAATCAAGAGAGATACTTCAGAGTTTGGTTGAGGAATATAAGGCCTGTGAGTCCCCAGATTACATCAAATGGGGAATGGAGTGGATCCAAAATTGGCAATATGAGCAAATCAGGATTGGAAGACTGTTGCAGGATAAGTCTTGGCACCAGGAAGTACATTGGATGGAGCATTGTAAATATGAATTAAATGTTGAGTTTGAGTTCTTCCCGAGTGAAGTGATTTGTAATGTAAATTTTTTGTGGGTATTTTGA

Protein Analysis

509

Amino Acids

58.25

Weight (kDa)

5.75

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 1419
AccI GTMKAC 1 cut(s) 818
AccII CGCG 1 cut(s) 187
AciI CCGC 2 cut(s) 39, 185
AclWI GGATC 2 cut(s) 1354, 1367
AcsI RAATTY 4 cut(s) 105, 685, 1268, 1507
AcuI CTGAAG 1 cut(s) 1277
AfaI GTAC 3 cut(s) 870, 956, 1431
AfiI CCNNNNNNNGG 1 cut(s) 1000
AgsI TTSAA 8 cut(s) 233, 344, 398, 420, 472, 631, 980, 1055
AjnI CCWGG 4 cut(s) 204, 736, 840, 1422
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 5 cut(s) 164, 191, 377, 941, 1039
AluI AGCT 5 cut(s) 164, 191, 377, 941, 1039
Alw26I GTCTC 2 cut(s) 458, 1101
AlwI GGATC 2 cut(s) 1354, 1367
Ama87I CYCGRG 3 cut(s) 80, 110, 1483
AoxI GGCC 4 cut(s) 312, 1060, 1113, 1317
ApaI GGGCCC 1 cut(s) 1064
ApoI RAATTY 4 cut(s) 105, 685, 1268, 1507
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 3 cut(s) 299, 651, 840
AspS9I GGNCC 6 cut(s) 312, 547, 610, 1060, 1061, 1114
AsuHPI GGTGA 1 cut(s) 1154
AvaI CYCGRG 3 cut(s) 80, 110, 1483
AvaII GGWCC 2 cut(s) 547, 610
BaeGI GKGCMC 1 cut(s) 1064
BamHI GGATCC 1 cut(s) 1359
BanI GGYRCC 1 cut(s) 1419
BanII GRGCYC 1 cut(s) 1064
BbsI GAAGAC 3 cut(s) 758, 892, 1402
BccI CCATC 3 cut(s) 374, 520, 1432
BceAI ACGGC 1 cut(s) 1128
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 4 cut(s) 206, 738, 842, 1424
BciVI GTATCC 2 cut(s) 734, 1017
BclI TGATCA 2 cut(s) 169, 325
BcoDI GTCTC 2 cut(s) 458, 1101
BfaI CTAG 2 cut(s) 942, 1089
BfmI CTRYAG 1 cut(s) 893
BfoI RGCGCY 2 cut(s) 652, 841
BfuAI ACCTGC 1 cut(s) 16
BfuI GTATCC 2 cut(s) 734, 1017
Bme1390I CCNGG 4 cut(s) 206, 738, 842, 1424
Bme18I GGWCC 2 cut(s) 547, 610
BmeT110I CYCGRG 3 cut(s) 80, 110, 1483
BmgT120I GGNCC 6 cut(s) 312, 547, 610, 1060, 1061, 1114
BmiI GGNNCC 6 cut(s) 210, 451, 1061, 1062, 1361, 1421
BmrFI CCNGG 4 cut(s) 206, 738, 842, 1424
BmsI GCATC 3 cut(s) 782, 785, 1185
BpiI GAAGAC 3 cut(s) 758, 892, 1402
BpmI CTGGAG 2 cut(s) 227, 447
Bpu10I CCTNAGC 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 478
BsaAI YACGTR 1 cut(s) 1028
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 1000
Bse1I ACTGG 3 cut(s) 315, 498, 1186
Bse3DI GCAATG 1 cut(s) 20
BseBI CCWGG 4 cut(s) 206, 738, 842, 1424
BseCI ATCGAT 1 cut(s) 478
BseGI GGATG 1 cut(s) 1443
BseLI CCNNNNNNNGG 1 cut(s) 1000
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 4 cut(s) 140, 453, 719, 1013
BseNI ACTGG 3 cut(s) 315, 498, 1186
BseSI GKGCMC 1 cut(s) 1064
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 4 cut(s) 314, 1062, 1115, 1319
BshNI GGYRCC 1 cut(s) 1419
BshVI ATCGAT 1 cut(s) 478
BsiHKCI CYCGRG 3 cut(s) 80, 110, 1483
BslFI GGGAC 1 cut(s) 1312
BslI CCNNNNNNNGG 1 cut(s) 1000
BsmAI GTCTC 2 cut(s) 458, 1101
BsmFI GGGAC 1 cut(s) 1312
BsmI GAATGC 1 cut(s) 1071
BsnI GGCC 4 cut(s) 314, 1062, 1115, 1319
BsoBI CYCGRG 3 cut(s) 80, 110, 1483
Bsp120I GGGCCC 1 cut(s) 1060
Bsp1286I GDGCHC 1 cut(s) 1064
Bsp143I GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
BspACI CCGC 2 cut(s) 39, 185
BspANI GGCC 4 cut(s) 314, 1062, 1115, 1319
BspCNI CTCAG 4 cut(s) 139, 452, 720, 1012
BspDI ATCGAT 1 cut(s) 478
BspFNI CGCG 1 cut(s) 187
BspHI TCATGA 2 cut(s) 262, 1006
BspLI GGNNCC 6 cut(s) 210, 451, 1061, 1062, 1361, 1421
BspMAI CTGCAG 1 cut(s) 897
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 2 cut(s) 1354, 1367
BspT107I GGYRCC 1 cut(s) 1419
BsrDI GCAATG 1 cut(s) 20
BsrI ACTGG 3 cut(s) 315, 498, 1186
BssMI GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
BssNAI GTATAC 1 cut(s) 819
Bst1107I GTATAC 1 cut(s) 819
Bst2UI CCWGG 4 cut(s) 206, 738, 842, 1424
Bst4CI ACNGT 6 cut(s) 239, 509, 703, 832, 868, 1401
Bst6I CTCTTC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 1028
BstC8I GCNNGC 6 cut(s) 189, 715, 1069, 1140, 1144, 1212
BstDEI CTNAG 5 cut(s) 126, 439, 728, 999, 1199
BstF5I GGATG 1 cut(s) 1443
BstFNI CGCG 1 cut(s) 187
BstH2I RGCGCY 2 cut(s) 652, 841
BstHHI GCGC 3 cut(s) 299, 651, 840
BstKTI GATC 8 cut(s) 15, 51, 139, 172, 286, 328, 478, 1362
BstMAI GTCTC 2 cut(s) 458, 1101
BstMBI GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
BstMWI GCNNNNNNNGC 4 cut(s) 193, 947, 1068, 1378
BstNI CCWGG 4 cut(s) 206, 738, 842, 1424
BstSCI CCNGG 4 cut(s) 204, 736, 840, 1422
BstSFI CTRYAG 1 cut(s) 893
BstSLI GKGCMC 1 cut(s) 1064
BstUI CGCG 1 cut(s) 187
BstV2I GAAGAC 3 cut(s) 758, 892, 1402
BstX2I RGATCY 1 cut(s) 1359
BstYI RGATCY 1 cut(s) 1359
BstZ17I GTATAC 1 cut(s) 819
Bsu15I ATCGAT 1 cut(s) 478
BsuI GTATCC 2 cut(s) 734, 1017
BsuRI GGCC 4 cut(s) 314, 1062, 1115, 1319
BsuTUI ATCGAT 1 cut(s) 478
BtsCI GGATG 1 cut(s) 1443
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 6 cut(s) 244, 322, 514, 621, 864, 1132
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 6 cut(s) 189, 715, 1069, 1140, 1144, 1212
CciI TCATGA 2 cut(s) 262, 1006
CfoI GCGC 3 cut(s) 299, 651, 840
Cfr13I GGNCC 6 cut(s) 312, 547, 610, 1060, 1061, 1114
ClaI ATCGAT 1 cut(s) 478
CseI GACGC 1 cut(s) 580
Csp6I GTAC 3 cut(s) 869, 955, 1430
CspCI CAANNNNNGTGG 4 cut(s) 522, 557, 853, 888
CviAII CATG 8 cut(s) 55, 86, 263, 287, 361, 445, 745, 1007
CviQI GTAC 3 cut(s) 869, 955, 1430
DdeI CTNAG 5 cut(s) 126, 439, 728, 999, 1199
DpnI GATC 8 cut(s) 14, 50, 138, 171, 285, 327, 477, 1361
DpnII GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 1319
Eco24I GRGCYC 1 cut(s) 1064
Eco32I GATATC 1 cut(s) 734
Eco47I GGWCC 2 cut(s) 547, 610
Eco57I CTGAAG 1 cut(s) 1277
Eco88I CYCGRG 3 cut(s) 80, 110, 1483
EcoO109I RGGNCCY 2 cut(s) 1060, 1061
EcoRI GAATTC 1 cut(s) 105
EcoRII CCWGG 4 cut(s) 204, 736, 840, 1422
EcoRV GATATC 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 1064
FaeI CATG 8 cut(s) 58, 89, 266, 290, 364, 448, 748, 1010
FalI AAGNNNNNCTT 4 cut(s) 1199, 1231, 1203, 1235
FaqI GGGAC 1 cut(s) 1312
FatI CATG 8 cut(s) 54, 85, 262, 286, 360, 444, 744, 1006
FauI CCCGC 1 cut(s) 32
FauNDI CATATG 2 cut(s) 922, 1102
FbaI TGATCA 2 cut(s) 169, 325
FblI GTMKAC 1 cut(s) 818
FokI GGATG 1 cut(s) 1450
FriOI GRGCYC 1 cut(s) 1064
FspBI CTAG 2 cut(s) 942, 1089
GlaI GCGC 3 cut(s) 298, 650, 839
GsuI CTGGAG 2 cut(s) 227, 447
HaeII RGCGCY 2 cut(s) 652, 841
HaeIII GGCC 4 cut(s) 314, 1062, 1115, 1319
HgaI GACGC 1 cut(s) 580
HhaI GCGC 3 cut(s) 299, 651, 840
Hin1II CATG 8 cut(s) 58, 89, 266, 290, 364, 448, 748, 1010
Hin6I GCGC 3 cut(s) 297, 649, 838
HinP1I GCGC 3 cut(s) 297, 649, 838
HincII GTYRAC 2 cut(s) 991, 1045
HindII GTYRAC 2 cut(s) 991, 1045
HindIII AAGCTT 1 cut(s) 1037
HinfI GANTC 4 cut(s) 43, 90, 1277, 1325
HpaI GTTAAC 1 cut(s) 1045
HphI GGTGA 1 cut(s) 1154
Hpy166II GTNNAC 3 cut(s) 819, 991, 1045
Hpy188I TCNGA 9 cut(s) 32, 48, 141, 283, 501, 729, 1233, 1267, 1296
Hpy8I GTNNAC 3 cut(s) 819, 991, 1045
HpyAV CCTTC 3 cut(s) 95, 392, 662
HpyCH4III ACNGT 6 cut(s) 239, 509, 703, 832, 868, 1401
HpyCH4IV ACGT 2 cut(s) 580, 1027
HpyCH4V TGCA 9 cut(s) 25, 626, 773, 895, 1018, 1067, 1108, 1250, 1405
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 947, 1068, 1378
HpyF3I CTNAG 5 cut(s) 126, 439, 728, 999, 1199
HpySE526I ACGT 2 cut(s) 580, 1027
Hsp92II CATG 8 cut(s) 58, 89, 266, 290, 364, 448, 748, 1010
HspAI GCGC 3 cut(s) 297, 649, 838
Ksp22I TGATCA 2 cut(s) 169, 325
KspAI GTTAAC 1 cut(s) 1045
Kzo9I GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
LmnI GCTCC 2 cut(s) 208, 1441
LweI GCATC 3 cut(s) 782, 785, 1185
MaeI CTAG 2 cut(s) 942, 1089
MaeII ACGT 2 cut(s) 580, 1027
MaeIII GTNAC 1 cut(s) 1160
MalI GATC 8 cut(s) 14, 50, 138, 171, 285, 327, 477, 1361
MboI GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
MboII GAAGA 5 cut(s) 356, 758, 897, 1407, 1471
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 1359
MhlI GDGCHC 1 cut(s) 1064
MlyI GAGTC 1 cut(s) 1334
MmeI TCCRAC 3 cut(s) 10, 692, 809
MnlI CCTC 9 cut(s) 89, 106, 284, 340, 422, 834, 928, 1014, 1300
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 8 cut(s) 222, 576, 591, 659, 779, 968, 1044, 1460
MslI CAYNNNNRTG 2 cut(s) 291, 793
MspR9I CCNGG 4 cut(s) 206, 738, 842, 1424
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 1071
MvaI CCWGG 4 cut(s) 206, 738, 842, 1424
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 193, 947, 1068, 1378
NdeI CATATG 2 cut(s) 922, 1102
NdeII GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
NlaIII CATG 8 cut(s) 58, 89, 266, 290, 364, 448, 748, 1010
NlaIV GGNNCC 6 cut(s) 210, 451, 1061, 1062, 1361, 1421
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 1160
PaeR7I CTCGAG 2 cut(s) 80, 110
PagI TCATGA 2 cut(s) 262, 1006
PceI AGGCCT 1 cut(s) 1319
PctI GAATGC 1 cut(s) 1071
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 43, 90, 1277
PfoI TCCNGGA 1 cut(s) 736
PleI GAGTC 1 cut(s) 1333
PpsI GAGTC 1 cut(s) 1333
Ppu21I YACGTR 1 cut(s) 1028
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 4 cut(s) 204, 736, 840, 1422
PspGI CCWGG 4 cut(s) 204, 736, 840, 1422
PspN4I GGNNCC 6 cut(s) 210, 451, 1061, 1062, 1361, 1421
PspOMI GGGCCC 1 cut(s) 1060
PspPI GGNCC 6 cut(s) 312, 547, 610, 1060, 1061, 1114
PspXI VCTCGAGB 1 cut(s) 80
PstI CTGCAG 1 cut(s) 897
PsuI RGATCY 1 cut(s) 1359
RsaI GTAC 3 cut(s) 870, 956, 1431
RsaNI GTAC 3 cut(s) 869, 955, 1430
RseI CAYNNNNRTG 2 cut(s) 291, 793
SaqAI TTAA 8 cut(s) 222, 576, 591, 659, 779, 968, 1044, 1460
Sau3AI GATC 8 cut(s) 12, 48, 136, 169, 283, 325, 475, 1359
Sau96I GGNCC 6 cut(s) 312, 547, 610, 1060, 1061, 1114
SchI GAGTC 1 cut(s) 1334
ScrFI CCNGG 4 cut(s) 206, 738, 842, 1424
SduI GDGCHC 1 cut(s) 1064
SfaNI GCATC 3 cut(s) 782, 785, 1185
SfcI CTRYAG 1 cut(s) 893
Sfr274I CTCGAG 2 cut(s) 80, 110
SinI GGWCC 2 cut(s) 547, 610
SlaI CTCGAG 2 cut(s) 80, 110
SmiMI CAYNNNNRTG 2 cut(s) 291, 793
SmlI CTYRAG 2 cut(s) 80, 110
SmoI CTYRAG 2 cut(s) 80, 110
SseBI AGGCCT 1 cut(s) 1319
SsiI CCGC 2 cut(s) 39, 185
SspI AATATT 1 cut(s) 966
SspMI CTAG 2 cut(s) 942, 1089
StuI AGGCCT 1 cut(s) 1319
StyD4I CCNGG 4 cut(s) 204, 736, 840, 1422
TaaI ACNGT 6 cut(s) 239, 509, 703, 832, 868, 1401
TaiI ACGT 2 cut(s) 583, 1030
TaqI TCGA 5 cut(s) 81, 111, 247, 478, 928
TatI WGTACW 3 cut(s) 868, 954, 1429
TfiI GAWTC 3 cut(s) 43, 90, 1277
Tru1I TTAA 8 cut(s) 222, 576, 591, 659, 779, 968, 1044, 1460
Tru9I TTAA 8 cut(s) 222, 576, 591, 659, 779, 968, 1044, 1460
TscAI CASTG 6 cut(s) 244, 322, 514, 628, 871, 1132
TseFI GTSAC 1 cut(s) 1160
Tsp45I GTSAC 1 cut(s) 1160
TspDTI ATGAA 6 cut(s) 279, 644, 761, 995, 1023, 1470
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 6 cut(s) 244, 322, 514, 628, 871, 1132
VpaK11BI GGWCC 2 cut(s) 547, 610
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 4 cut(s) 105, 685, 1268, 1507
XbaI TCTAGA 1 cut(s) 1088
XcmI CCANNNNNNNNNTGG 2 cut(s) 422, 1124
XhoI CTCGAG 2 cut(s) 80, 110
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 2 cut(s) 942, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.