Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008757.1

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Forward (+)

92222 .. 93567

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008757.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggttcatcaggaagtagtgattatggcgactttaagaagtgtgtctgttgaaatagatgtctgtaatacttatcaaactgaaatgctgcagggaggggacagaaaagatgtgtttttctaccaagctgacgatcagcactacataccacgagctttgctgattgatttggagcccagagtgattaatggtattcagaacagtgactatcgaaacctctacaatcatgagaacatctatgttgcagatcatggaggtggtgcaggaaataattgggccagtggatatgatcagggaaaaggtgttgaagaggccataatggacatgattgatagagaagcagatgggagtgatagtcttgaaggatttgttctttgccattcaattgctggtggaacaggctcaggaatgggttcctatctattggagactttgaatgatcgatacagcaaaaaactggttcagacatacagtgtatttcctaaccagatggaaacaagtgatgtggtggtccagccctataactcacttttgacacttaagcgactaactctgaatgctgattgtgttgtcgtccttgataacactgcattgaatagaattgctgtcgagcgcctccatctcacaaatcccacctttgctcaaacaaattctttggtttctactgtaatgtctgccagcacaaccactctgagatatccagggtacatgaacaacgacttggttggtcttcttgcatctttgattccaacaccaagatgccattttctaatgacaggatatacacccctcacagtcgagcgccaggtaagactcagtcatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

275

Amino Acids

30.52

Weight (kDa)

4.99

Isoelectric Point (pI)

22.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	649
AfaI	GTAC	1 cut(s)	707
AflII	CTTAAG	1 cut(s)	539
AgsI	TTSAA	6 cut(s)	53, 308, 362, 384, 436, 595
AjnI	CCWGG	2 cut(s)	700, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	2 cut(s)	128, 155
AluI	AGCT	2 cut(s)	128, 155
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	2 cut(s)	276, 312
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	649
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	2 cut(s)	615, 804
AspS9I	GGNCC	2 cut(s)	276, 511
AvaII	GGWCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	3 cut(s)	338, 484, 627
BciT130I	CCWGG	2 cut(s)	702, 806
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	89
BfoI	RGCGCY	2 cut(s)	616, 805
BfrI	CTTAAG	1 cut(s)	539
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	702, 806
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	276, 511
BmiI	GGNNCC	2 cut(s)	174, 415
BmrFI	CCNGG	2 cut(s)	702, 806
BmsI	GCATC	2 cut(s)	746, 749
BpiI	GAAGAC	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	701
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bse1I	ACTGG	2 cut(s)	279, 462
BseBI	CCWGG	2 cut(s)	702, 806
BseCI	ATCGAT	1 cut(s)	442
BseDI	CCNNGG	1 cut(s)	701
BseMII	CTCAG	2 cut(s)	417, 683
BseNI	ACTGG	2 cut(s)	279, 462
BseXI	GCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	278, 314
BshVI	ATCGAT	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	278, 314
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	133, 247, 289, 439
BspANI	GGCC	2 cut(s)	278, 314
BspCNI	CTCAG	3 cut(s)	416, 684, 828
BspDI	ATCGAT	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	174, 415
BspMAI	CTGCAG	1 cut(s)	93
BspTI	CTTAAG	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	279, 462
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	4 cut(s)	133, 247, 289, 439
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	702, 806
Bst4CI	ACNGT	4 cut(s)	203, 473, 667, 796
Bst6I	CTCTTC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	3 cut(s)	403, 692, 815
BstH2I	RGCGCY	2 cut(s)	616, 805
BstHHI	GCGC	2 cut(s)	615, 804
BstKTI	GATC	4 cut(s)	136, 250, 292, 442
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	133, 247, 289, 439
BstNI	CCWGG	2 cut(s)	702, 806
BstSCI	CCNGG	2 cut(s)	700, 804
BstSFI	CTRYAG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	722
Bsu15I	ATCGAT	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	278, 314
BsuTUI	ATCGAT	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	4 cut(s)	208, 286, 478, 585
Cac8I	GCNNGC	1 cut(s)	679
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	615, 804
Cfr13I	GGNCC	2 cut(s)	276, 511
ClaI	ATCGAT	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	4 cut(s)	138, 173, 486, 521
CviAII	CATG	6 cut(s)	227, 251, 325, 709, 821, 825
CviJI	RGCY	7 cut(s)	128, 155, 175, 278, 314, 402, 517
CviKI_1	RGCY	7 cut(s)	128, 155, 175, 278, 314, 402, 517
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	3 cut(s)	403, 692, 815
DpnI	GATC	4 cut(s)	135, 249, 291, 441
DpnII	GATC	4 cut(s)	133, 247, 289, 439
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	700, 804
EcoRV	GATATC	1 cut(s)	698
EcoT22I	ATGCAT	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	6 cut(s)	230, 254, 328, 712, 824, 828
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	6 cut(s)	226, 250, 324, 708, 820, 824
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	89
GlaI	GCGC	2 cut(s)	614, 803
GluI	GCNGC	1 cut(s)	89
HaeII	RGCGCY	2 cut(s)	616, 805
HaeIII	GGCC	2 cut(s)	278, 314
HhaI	GCGC	2 cut(s)	615, 804
Hin1II	CATG	6 cut(s)	230, 254, 328, 712, 824, 828
Hin6I	GCGC	2 cut(s)	613, 802
HinP1I	GCGC	2 cut(s)	613, 802
HinfI	GANTC	2 cut(s)	745, 813
Hpy188I	TCNGA	4 cut(s)	198, 465, 555, 693
Hpy188III	TCNNGA	4 cut(s)	11, 227, 359, 405
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	4 cut(s)	203, 473, 667, 796
HpyCH4V	TGCA	6 cut(s)	91, 245, 263, 590, 737, 824
HpyF3I	CTNAG	3 cut(s)	403, 692, 815
Hsp92II	CATG	6 cut(s)	230, 254, 328, 712, 824, 828
HspAI	GCGC	2 cut(s)	613, 802
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	133, 247, 289, 439
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	2 cut(s)	746, 749
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	135, 249, 291, 441
MboI	GATC	4 cut(s)	133, 247, 289, 439
MboII	GAAGA	2 cut(s)	320, 722
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	4 cut(s)	271, 384, 600, 649
MlyI	GAGTC	1 cut(s)	807
MmeI	TCCRAC	1 cut(s)	773
MnlI	CCTC	6 cut(s)	89, 227, 248, 304, 626, 800
Mph1103I	ATGCAT	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	3 cut(s)	35, 186, 540
MslI	CAYNNNNRTG	2 cut(s)	255, 757
MspCI	CTTAAG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	702, 806
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	2 cut(s)	702, 806
NdeII	GATC	4 cut(s)	133, 247, 289, 439
NlaIII	CATG	6 cut(s)	230, 254, 328, 712, 824, 828
NlaIV	GGNNCC	2 cut(s)	174, 415
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	826
PagI	TCATGA	1 cut(s)	226
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	745
PflFI	GACNNNGTC	1 cut(s)	816
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	807
PshBI	ATTAAT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	700, 804
PspGI	CCWGG	2 cut(s)	700, 804
PspN4I	GGNNCC	2 cut(s)	174, 415
PspPI	GGNCC	2 cut(s)	276, 511
PstI	CTGCAG	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	816
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	2 cut(s)	255, 757
SaqAI	TTAA	3 cut(s)	35, 186, 540
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	4 cut(s)	133, 247, 289, 439
Sau96I	GGNCC	2 cut(s)	276, 511
SchI	GAGTC	1 cut(s)	807
ScrFI	CCNGG	2 cut(s)	702, 806
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	7 cut(s)	130, 157, 219, 259, 304, 638, 810
SfaNI	GCATC	2 cut(s)	746, 749
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	255, 757
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	4 cut(s)	271, 384, 600, 649
StyD4I	CCNGG	2 cut(s)	700, 804
TaaI	ACNGT	4 cut(s)	203, 473, 667, 796
TaqI	TCGA	4 cut(s)	211, 442, 609, 798
TasI	AATT	4 cut(s)	271, 384, 600, 649
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	3 cut(s)	35, 186, 540
Tru9I	TTAA	3 cut(s)	35, 186, 540
TscAI	CASTG	4 cut(s)	208, 286, 478, 592
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	725
TspRI	CASTG	4 cut(s)	208, 286, 478, 592
Tth111I	GACNNNGTC	1 cut(s)	816
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.