Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001063.1

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Forward (+)

104220 .. 107791

Gene Structure 3572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001063.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ctgccgcaagcccctgcagcacctagccccttgctagcccgcctactactgcagccctctcggcctgcctacctgccagcgcgcccccgcgctcagttcgctgccttgcagccccgcgcccgtgcgtccaccccacgctgcccctgcagcgttgcgttgtctaggaagtctccatatgtgcaaactggccacagggaaaatgacctttcagaatttgatgaatcaagagaaatacttgagtgtttggttgatgaatataaggcctgtgagtccccagattacatcaaatggggaatggaggatccagaccacgttcttacaggagaaggcaatgcagcaggaacagtggacccaaaattggcagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

122

Amino Acids

13.32

Weight (kDa)

5.67

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccII	CGCG	3 cut(s)	82, 90, 117
AciI	CCGC	4 cut(s)	5, 40, 88, 115
AclWI	GGATC	2 cut(s)	296, 309
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	296, 309
AoxI	GGCC	3 cut(s)	62, 187, 261
ApeKI	GCWGC	8 cut(s)	17, 52, 101, 109, 138, 147, 335, 362
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	4 cut(s)	82, 84, 92, 119
AspS9I	GGNCC	1 cut(s)	349
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	301
BbvI	GCAGC	7 cut(s)	29, 64, 88, 121, 125, 159, 347
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	24, 35, 162
BfmI	CTRYAG	3 cut(s)	15, 50, 145
BfuAI	ACCTGC	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	9 cut(s)	5, 18, 53, 102, 110, 139, 148, 336, 363
BlsI	GCNGC	9 cut(s)	6, 19, 54, 103, 111, 140, 149, 337, 364
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	303, 351
BmtI	GCTAGC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	190
BsePI	GCGCGC	1 cut(s)	80
BseXI	GCAGC	7 cut(s)	29, 64, 88, 121, 125, 159, 347
Bsh1236I	CGCG	3 cut(s)	82, 90, 117
BshFI	GGCC	3 cut(s)	64, 189, 263
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	64, 189, 263
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	4 cut(s)	5, 40, 88, 115
BspANI	GGCC	3 cut(s)	64, 189, 263
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	3 cut(s)	82, 90, 117
BspLI	GGNNCC	2 cut(s)	303, 351
BspMAI	CTGCAG	3 cut(s)	19, 54, 149
BspMI	ACCTGC	1 cut(s)	81
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	296, 309
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	190
BssHII	GCGCGC	1 cut(s)	80
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	346
BstC8I	GCNNGC	6 cut(s)	9, 36, 40, 66, 78, 82
BstDEI	CTNAG	1 cut(s)	93
BstFNI	CGCG	3 cut(s)	82, 90, 117
BstHHI	GCGC	4 cut(s)	82, 84, 92, 119
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 61, 98, 144, 147
BstSFI	CTRYAG	3 cut(s)	15, 50, 145
BstUI	CGCG	3 cut(s)	82, 90, 117
BstV1I	GCAGC	7 cut(s)	29, 64, 88, 121, 125, 159, 347
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	3 cut(s)	64, 189, 263
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	6 cut(s)	9, 36, 40, 66, 78, 82
CfoI	GCGC	4 cut(s)	82, 84, 92, 119
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	114
CviAII	CATG	1 cut(s)	366
CviJI	RGCY	8 cut(s)	11, 27, 38, 55, 64, 112, 189, 263
CviKI_1	RGCY	8 cut(s)	11, 27, 38, 55, 64, 112, 189, 263
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	349
FaeI	CATG	1 cut(s)	369
FaiI	YATR	4 cut(s)	175, 177, 258, 367
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	365
FauI	CCCGC	3 cut(s)	47, 95, 122
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	9 cut(s)	5, 18, 53, 102, 110, 139, 148, 336, 363
Fsp4HI	GCNGC	9 cut(s)	5, 18, 53, 102, 110, 139, 148, 336, 363
FspBI	CTAG	3 cut(s)	24, 35, 162
GlaI	GCGC	4 cut(s)	81, 83, 91, 118
GluI	GCNGC	9 cut(s)	5, 18, 53, 102, 110, 139, 148, 336, 363
HaeIII	GGCC	3 cut(s)	64, 189, 263
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	4 cut(s)	82, 84, 92, 119
Hin1II	CATG	1 cut(s)	369
Hin6I	GCGC	4 cut(s)	80, 82, 90, 117
HinP1I	GCGC	4 cut(s)	80, 82, 90, 117
HinfI	GANTC	2 cut(s)	221, 269
Hpy166II	GTNNAC	2 cut(s)	129, 349
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	225, 305
Hpy8I	GTNNAC	2 cut(s)	129, 349
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	17, 52, 109, 147, 181, 335
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 61, 98, 144, 147
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	369
HspAI	GCGC	4 cut(s)	80, 82, 90, 117
Kzo9I	GATC	1 cut(s)	301
Lsp1109I	GCAGC	7 cut(s)	29, 64, 88, 121, 125, 159, 347
MaeI	CTAG	3 cut(s)	24, 35, 162
MaeII	ACGT	1 cut(s)	312
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	2 cut(s)	212, 356
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	2 cut(s)	67, 292
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	189
MvnI	CGCG	3 cut(s)	82, 90, 117
MwoI	GCNNNNNNNGC	5 cut(s)	17, 61, 98, 144, 147
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	1 cut(s)	301
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	2 cut(s)	303, 351
NmeAIII	GCCGAG	1 cut(s)	40
PauI	GCGCGC	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	9 cut(s)	6, 19, 54, 103, 111, 140, 149, 337, 364
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	303, 351
PspPI	GGNCC	1 cut(s)	349
PstI	CTGCAG	3 cut(s)	19, 54, 149
PsuI	RGATCY	1 cut(s)	301
PteI	GCGCGC	1 cut(s)	80
SatI	GCNGC	9 cut(s)	5, 18, 53, 102, 110, 139, 148, 336, 363
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	278
SetI	ASST	4 cut(s)	25, 75, 207, 315
SfcI	CTRYAG	3 cut(s)	15, 50, 145
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	212, 356
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	4 cut(s)	5, 40, 88, 115
SspMI	CTAG	3 cut(s)	24, 35, 162
StuI	AGGCCT	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	315
TasI	AATT	2 cut(s)	212, 356
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	8 cut(s)	17, 52, 101, 109, 138, 147, 335, 362
TspDTI	ATGAA	2 cut(s)	234, 267
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	3 cut(s)	24, 35, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.