Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003660.1

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Forward (+)

13434 .. 17164

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003660.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgaagatggctttgacaagtttctttgtgccaccaaattacaagcaacaggttgcgttgtctaggaagtctccatatgtgcaaactggccacagggaaaatgacctttcagaatttgatgaatcaagagaaatacttgagtgtttggttgatgaatataaggcctgtgagtccccagattacatcaaatggggaatggaggatccagaccacgttcttacaggagaaggcaatgcagcaggaacagtggacccaaaattggcagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

89

Amino Acids

10.01

Weight (kDa)

4.63

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	197, 210
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	197, 210
AoxI	GGCC	2 cut(s)	88, 162
ApeKI	GCWGC	2 cut(s)	236, 263
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	237, 264
BlsI	GCNGC	2 cut(s)	238, 265
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	2 cut(s)	204, 252
BpuEI	CTTGAG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	2 cut(s)	90, 164
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	90, 164
Bsp143I	GATC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	90, 164
BspLI	GGNNCC	2 cut(s)	204, 252
BspPI	GGATC	2 cut(s)	197, 210
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	247
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	90, 164
BtsIMutI	CAGTG	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	250
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	3 cut(s)	11, 90, 164
CviKI_1	RGCY	3 cut(s)	11, 90, 164
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	250
FaeI	CATG	1 cut(s)	270
FaiI	YATR	4 cut(s)	76, 78, 159, 268
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	237, 264
Fsp4HI	GCNGC	2 cut(s)	237, 264
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	237, 264
HaeIII	GGCC	2 cut(s)	90, 164
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	2 cut(s)	122, 170
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	126, 206
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	82, 236
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	8 cut(s)	35, 72, 79, 178, 189, 207, 219, 225
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	3 cut(s)	37, 113, 257
MluNI	TGGCCA	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	1 cut(s)	193
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	90
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	2 cut(s)	204, 252
PceI	AGGCCT	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	238, 265
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	204, 252
PspPI	GGNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	202
SatI	GCNGC	2 cut(s)	237, 264
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	179
SetI	ASST	3 cut(s)	54, 108, 216
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	37, 113, 257
SseBI	AGGCCT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	216
TasI	AATT	3 cut(s)	37, 113, 257
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	2 cut(s)	236, 263
TspDTI	ATGAA	3 cut(s)	17, 135, 168
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	113
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.