Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Forward (+)

17501980 .. 17506815

Gene Structure 4836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCTCGGGAGATCATCACATTGCAGGTGGGACAATGCGGCAACCAGATCGGAATGGAGTTCTGGAAGCAGCTCTGCCTCGAGCACGGTATCAGCAAAGAAGGCATTCTCGAAGACTTTGCCACTCAGGGAGGGGACAGAAAAGACGTGTTTTTCTACCAAGCTGATGATCAGCACTACATACCACGAGCTTTGCTGATTGATTTGGAGCCCAGAGTGATTAATGGTATTCAGAACAGTGACTATCGAAACCTCTACAATCATGAGAACATCTATGTTGCAGATCATGGAGGTGGTGCAGGAAATAATTGGGCCAGTGGATATGATCAGGGAAAAGGTGTTGAAGAGGCCATAATGGACATGATTGATAGAGAAGCAGATGGGAGTGATAGTCTTGAAGGATTTGTTCTTTGCCATTCAATTGCTGGTGGAACAGGCTCAGGAATGGGTTCCTATCTGTTGGAGACTTTGAATGATCGATACAGCAAAAAACTGGTTCAGACATACAGTGTATTTCCTAACCAGATGGAAACAAGTGATGTGGTTGTCCAGCCCTATAACTCACTTTTGACACTTAAGCGACTAACTCTGAATGCTGATTGTGTTGTCGTCCTTGATAACACTGCATTGAATAGAATCGCTGTTGAGCGCCTCCATCTCACAAATCCCACCTTTGCTCAAACAAATTCTTTGGTTTCTACTGTAATGTCTGCTAGCACAACCACTCTGAGATATCCAGGGTACATGAACAACGACTTGGTTGGTCTTCTTGCATCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGATATACACCCCTCACAGTCGAGCGCCAGGCTAATGTGATTCGTAAAACCACTGTACTTGATGTTATGAGAAGACTTCTGCAGGTAAAAAAATATCATGGTTTCCTCGTATGCTCGAACAAAAGAAGCCAGTCAAGCAAAGTATATATCGATATTAAACATCATTCAAGGAGAAGTAGACCCTACTCAGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

336

Amino Acids

37.61

Weight (kDa)

6.55

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	4 - 214	5.8e-61	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	264 - 302	5.5e-09	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	2 cut(s)	16, 886
AccI	GTMKAC	1 cut(s)	991
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	685
AfaI	GTAC	2 cut(s)	743, 870
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AflII	CTTAAG	1 cut(s)	575
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	6 cut(s)	344, 398, 420, 472, 631, 981
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	736, 840
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AluBI	AGCT	3 cut(s)	73, 164, 191
AluI	AGCT	3 cut(s)	73, 164, 191
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	458
Ama87I	CYCGRG	2 cut(s)	6, 80
AoxI	GGCC	2 cut(s)	312, 348
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	685
AseI	ATTAAT	1 cut(s)	222
Asp700I	GAANNNNTTC	2 cut(s)	105, 448
AspLEI	GCGC	2 cut(s)	651, 840
AspS9I	GGNCC	1 cut(s)	312
AsuNHI	GCTAGC	1 cut(s)	713
AvaI	CYCGRG	2 cut(s)	6, 80
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	3 cut(s)	120, 758, 892
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	374, 520, 663
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 101, 135
BciT130I	CCWGG	2 cut(s)	738, 842
BclI	TGATCA	2 cut(s)	169, 325
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	893
BfoI	RGCGCY	2 cut(s)	652, 841
BfrI	CTTAAG	1 cut(s)	575
BfuAI	ACCTGC	2 cut(s)	16, 886
BisI	GCNGC	2 cut(s)	40, 71
BlsI	GCNGC	2 cut(s)	41, 72
Bme1390I	CCNGG	2 cut(s)	738, 842
BmeT110I	CYCGRG	2 cut(s)	6, 80
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	210, 451
BmrFI	CCNGG	2 cut(s)	738, 842
BmsI	GCATC	2 cut(s)	782, 785
BmtI	GCTAGC	1 cut(s)	717
BpiI	GAAGAC	3 cut(s)	120, 758, 892
Bpu10I	CCTNAGC	1 cut(s)	439
Bsa29I	ATCGAT	2 cut(s)	478, 963
BsaJI	CCNNGG	2 cut(s)	5, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse1I	ACTGG	3 cut(s)	315, 498, 943
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	738, 842
BseCI	ATCGAT	2 cut(s)	478, 963
BseDI	CCNNGG	2 cut(s)	5, 737
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	3 cut(s)	140, 453, 719
BseNI	ACTGG	3 cut(s)	315, 498, 943
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	314, 350
BshVI	ATCGAT	2 cut(s)	478, 963
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	2 cut(s)	6, 80
BslFI	GGGAC	2 cut(s)	45, 149
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	45, 149
BsmI	GAATGC	2 cut(s)	105, 598
BsnI	GGCC	2 cut(s)	314, 350
BsoBI	CYCGRG	2 cut(s)	6, 80
Bsp1286I	GDGCHC	2 cut(s)	87, 213
Bsp143I	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	314, 350
BspCNI	CTCAG	3 cut(s)	139, 452, 720
BspDI	ATCGAT	2 cut(s)	478, 963
BspHI	TCATGA	2 cut(s)	262, 1007
BspLI	GGNNCC	2 cut(s)	210, 451
BspMAI	CTGCAG	1 cut(s)	897
BspMI	ACCTGC	2 cut(s)	16, 886
BspOI	GCTAGC	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	315, 498, 943
BssECI	CCNNGG	2 cut(s)	5, 737
BssMI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	738, 842
Bst4CI	ACNGT	6 cut(s)	89, 239, 509, 703, 832, 868
Bst6I	CTCTTC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	715
BstDEI	CTNAG	4 cut(s)	126, 439, 728, 1000
BstH2I	RGCGCY	2 cut(s)	652, 841
BstHHI	GCGC	2 cut(s)	651, 840
BstKTI	GATC	6 cut(s)	15, 51, 172, 286, 328, 478
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 948
BstNI	CCWGG	2 cut(s)	738, 842
BstSCI	CCNGG	2 cut(s)	736, 840
BstSFI	CTRYAG	1 cut(s)	893
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	3 cut(s)	120, 758, 892
Bsu15I	ATCGAT	2 cut(s)	478, 963
BsuRI	GGCC	2 cut(s)	314, 350
BsuTUI	ATCGAT	2 cut(s)	478, 963
BtrI	CACGTC	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	5 cut(s)	244, 322, 514, 621, 864
BveI	ACCTGC	2 cut(s)	16, 886
Cac8I	GCNNGC	1 cut(s)	715
CciI	TCATGA	2 cut(s)	262, 1007
CfoI	GCGC	2 cut(s)	651, 840
Cfr13I	GGNCC	1 cut(s)	312
ClaI	ATCGAT	2 cut(s)	478, 963
Csp6I	GTAC	2 cut(s)	742, 869
CspCI	CAANNNNNGTGG	6 cut(s)	174, 209, 522, 557, 853, 888
CviAII	CATG	6 cut(s)	263, 287, 361, 745, 911, 1008
CviQI	GTAC	2 cut(s)	742, 869
DdeI	CTNAG	4 cut(s)	126, 439, 728, 1000
DpnI	GATC	6 cut(s)	14, 50, 171, 285, 327, 477
DpnII	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	734
Eco88I	CYCGRG	2 cut(s)	6, 80
EcoRII	CCWGG	2 cut(s)	736, 840
EcoRV	GATATC	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	6 cut(s)	266, 290, 364, 748, 914, 1011
FaqI	GGGAC	2 cut(s)	45, 149
FatI	CATG	6 cut(s)	262, 286, 360, 744, 910, 1007
FbaI	TGATCA	2 cut(s)	169, 325
FblI	GTMKAC	1 cut(s)	991
Fnu4HI	GCNGC	2 cut(s)	40, 71
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	40, 71
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	2 cut(s)	650, 839
GluI	GCNGC	2 cut(s)	40, 71
HaeII	RGCGCY	2 cut(s)	652, 841
HaeIII	GGCC	2 cut(s)	314, 350
HhaI	GCGC	2 cut(s)	651, 840
Hin1II	CATG	6 cut(s)	266, 290, 364, 748, 914, 1011
Hin6I	GCGC	2 cut(s)	649, 838
HinP1I	GCGC	2 cut(s)	649, 838
HinfI	GANTC	3 cut(s)	636, 781, 853
Hpy166II	GTNNAC	1 cut(s)	992
Hpy188I	TCNGA	5 cut(s)	53, 234, 501, 591, 729
Hpy188III	TCNNGA	7 cut(s)	8, 64, 110, 263, 395, 441, 1008
Hpy8I	GTNNAC	1 cut(s)	992
HpyAV	CCTTC	2 cut(s)	95, 392
HpyCH4III	ACNGT	6 cut(s)	89, 239, 509, 703, 832, 868
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	6 cut(s)	25, 281, 299, 626, 773, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 948
HpyF3I	CTNAG	4 cut(s)	126, 439, 728, 1000
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	6 cut(s)	266, 290, 364, 748, 914, 1011
HspAI	GCGC	2 cut(s)	649, 838
Ksp22I	TGATCA	2 cut(s)	169, 325
Kzo9I	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	782, 785
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	6 cut(s)	14, 50, 171, 285, 327, 477
MboI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
MboII	GAAGA	4 cut(s)	125, 356, 758, 897
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	2 cut(s)	87, 213
MluCI	AATT	3 cut(s)	307, 420, 685
MmeI	TCCRAC	2 cut(s)	441, 809
MnlI	CCTC	9 cut(s)	15, 89, 125, 263, 284, 340, 662, 836, 929
MroXI	GAANNNNTTC	2 cut(s)	105, 448
MseI	TTAA	3 cut(s)	222, 576, 969
MslI	CAYNNNNRTG	2 cut(s)	291, 793
MspCI	CTTAAG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	738, 842
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	2 cut(s)	105, 598
MvaI	CCWGG	2 cut(s)	738, 842
MwoI	GCNNNNNNNGC	2 cut(s)	102, 948
NdeII	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
NheI	GCTAGC	1 cut(s)	713
NlaIII	CATG	6 cut(s)	266, 290, 364, 748, 914, 1011
NlaIV	GGNNCC	2 cut(s)	210, 451
NmuCI	GTSAC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	2 cut(s)	262, 1007
PaqCI	CACCTGC	1 cut(s)	16
PctI	GAATGC	2 cut(s)	105, 598
PdmI	GAANNNNTTC	2 cut(s)	105, 448
PfeI	GAWTC	3 cut(s)	636, 781, 853
PkrI	GCNGC	2 cut(s)	41, 72
PshBI	ATTAAT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	736, 840
PspGI	CCWGG	2 cut(s)	736, 840
PspN4I	GGNNCC	2 cut(s)	210, 451
PspPI	GGNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	897
RsaI	GTAC	2 cut(s)	743, 870
RsaNI	GTAC	2 cut(s)	742, 869
RseI	CAYNNNNRTG	2 cut(s)	291, 793
SaqAI	TTAA	3 cut(s)	222, 576, 969
SatI	GCNGC	2 cut(s)	40, 71
Sau3AI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
Sau96I	GGNCC	1 cut(s)	312
ScrFI	CCNGG	2 cut(s)	738, 842
SduI	GDGCHC	2 cut(s)	87, 213
SfaNI	GCATC	2 cut(s)	782, 785
SfcI	CTRYAG	1 cut(s)	893
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	291, 793
SmlI	CTYRAG	2 cut(s)	80, 575
SmoI	CTYRAG	2 cut(s)	80, 575
Sse9I	AATT	3 cut(s)	307, 420, 685
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	2 cut(s)	736, 840
TaaI	ACNGT	6 cut(s)	89, 239, 509, 703, 832, 868
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	7 cut(s)	81, 111, 247, 478, 834, 929, 963
TasI	AATT	3 cut(s)	307, 420, 685
TatI	WGTACW	1 cut(s)	868
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	636, 781, 853
Tru1I	TTAA	3 cut(s)	222, 576, 969
Tru9I	TTAA	3 cut(s)	222, 576, 969
TscAI	CASTG	5 cut(s)	244, 322, 514, 628, 871
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	761, 996
TspRI	CASTG	5 cut(s)	244, 322, 514, 628, 871
Vha464I	CTTAAG	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	991
XmnI	GAANNNNTTC	2 cut(s)	105, 448
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.