Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Reverse (-)

52738677 .. 52754909

Gene Structure 16233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCGTCGACCAAGATTTACTTTGCTTATTTCCAAGTGTTGCAAACAGAAGCTGCAGAACCGTCATTACTAAGACATGAAAATAAGGACGTCCTTCCCATCATATTAAGTTTCTCCAAGCAAAGCTGGTTTTACAATGAAGATACGAAAGCCATAACTTGTAGTCCACCACACCTCATAAATAAAAAACGAACACGGGTCTCTCTCTCTCGTCGCAAATATAGGAGAGGGGATAAGAAGATTGTGGGTCAGAAGCTTTTGAACATGCGTATCCCAGAAGACGTGGAGCCATCTATTACTGAACTAATTTTTAAGCAGGTTGAAGTAGCCGTCCCCGGGCTTCCTCTAGTTGTGGTAATAGTTGACGTGACTGTCGAATTGTTGGGTTGTTTGACTTGTTTCGACAATGATCCTCATTCCACGGATAGGGTTCAAAATCAAACTTCAGAATCCATTACAAATACTGTGTTACATAGTTTTGCCGATCAAAAAGTATATGTCATGGGCCATCTTATTCCTGCAACTAGATCATCACCATTTGAGGGTCTGGAGGAACTGAGGCTTGATGACTTGGAAGAAGCTAGTATCAGACAAACCCCAGCTTGTGCTATTTGTTTGGAGGATTTTGCAGAAGGTGCCGATTTTTATGAAAATATGATTGGTAGAAACAGCAGGGGATCGGAGCAGGGCCATAGAAAGAACAAAGTTGCGTTGTCTAGGAAGTCTCCATATGTGCAAACTGGCCATAGGGTCGGTGGTCTTATGCTAGCCAGCCATACTAGTATTCGCCACCTTTTCAGCAAGTGTTTTAGCCGGTGTTCGATGTTAAGACGGAAGCAAGCTTTTCTTGACAACTACCAGAAGTTCCCAATGTTTGCTGAGAATGACCTTTCAGAATTTGATGAATCAAGAGCAATACTTGAGTGTTTGGTTGATGAATATAAGGCCTGTGAGTCCCCAGATTACATCAAATGGGGAATGGAGGATCCAGACCACGTTCTTACAGGAGAAGGCAGTGCAGCAGGAACAGTGGACCCAAAATTGGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

350

Amino Acids

39.59

Weight (kDa)

6.1

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin_C	PF03953	233 - 269	3.4e-06	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	8
AclWI	GGATC	4 cut(s)	404, 685, 980, 993
AcoI	YGGCCR	1 cut(s)	742
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	4 cut(s)	336, 426, 542, 1042
AgsI	TTSAA	3 cut(s)	262, 323, 434
AhlI	ACTAGT	1 cut(s)	779
AjiI	CACGTC	2 cut(s)	283, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	6 cut(s)	53, 126, 256, 581, 602, 842
AluI	AGCT	6 cut(s)	53, 126, 256, 581, 602, 842
Alw26I	GTCTC	2 cut(s)	205, 729
AlwI	GGATC	4 cut(s)	404, 685, 980, 993
AlwNI	CAGNNNCTG	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	4 cut(s)	505, 688, 742, 945
ApeKI	GCWGC	2 cut(s)	53, 1019
ApoI	RAATTY	1 cut(s)	896
AspS9I	GGNCC	3 cut(s)	505, 688, 1033
AsuC2I	CCSGG	2 cut(s)	336, 337
AsuHPI	GGTGA	1 cut(s)	525
AsuNHI	GCTAGC	1 cut(s)	766
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	1033
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BalI	TGGCCA	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	985
BanI	GGYRCC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	40, 1031
BccI	CCATC	3 cut(s)	107, 298, 516
BceAI	ACGGC	1 cut(s)	314
BciVI	GTATCC	1 cut(s)	281
BcnI	CCSGG	2 cut(s)	336, 337
BcoDI	GTCTC	2 cut(s)	205, 729
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	6 cut(s)	347, 525, 582, 717, 767, 780
BfmI	CTRYAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	54, 1020
BlsI	GCNGC	2 cut(s)	55, 1021
Bme1390I	CCNGG	2 cut(s)	336, 337
Bme18I	GGWCC	1 cut(s)	1033
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	2 cut(s)	283, 367
BmgT120I	GGNCC	3 cut(s)	505, 688, 1033
BmiI	GGNNCC	4 cut(s)	288, 637, 987, 1035
BmrFI	CCNGG	2 cut(s)	336, 337
BmtI	GCTAGC	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	2 cut(s)	336, 337
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	334, 335, 420
Bsc4I	CCNNNNNNNGG	4 cut(s)	336, 426, 542, 1042
Bse118I	RCCGGY	1 cut(s)	813
Bse1I	ACTGG	1 cut(s)	745
BseDI	CCNNGG	3 cut(s)	334, 335, 420
BseLI	CCNNNNNNNGG	4 cut(s)	336, 426, 542, 1042
BseMII	CTCAG	2 cut(s)	548, 870
BseNI	ACTGG	1 cut(s)	745
BseXI	GCAGC	2 cut(s)	40, 1031
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	1038
BshFI	GGCC	4 cut(s)	507, 690, 744, 947
BshNI	GGYRCC	1 cut(s)	635
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	336, 814
BslFI	GGGAC	2 cut(s)	317, 940
BslI	CCNNNNNNNGG	4 cut(s)	336, 426, 542, 1042
BsmAI	GTCTC	2 cut(s)	205, 729
BsmFI	GGGAC	2 cut(s)	317, 940
BsnI	GGCC	4 cut(s)	507, 690, 744, 947
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	409, 484, 527, 677, 985
BspANI	GGCC	4 cut(s)	507, 690, 744, 947
BspCNI	CTCAG	2 cut(s)	549, 871
BspLI	GGNNCC	4 cut(s)	288, 637, 987, 1035
BspMAI	CTGCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	770
BspPI	GGATC	4 cut(s)	404, 685, 980, 993
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	813
BsrI	ACTGG	1 cut(s)	745
BssAI	RCCGGY	1 cut(s)	813
BssECI	CCNNGG	3 cut(s)	334, 335, 420
BssMI	GATC	5 cut(s)	409, 484, 527, 677, 985
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	4 cut(s)	63, 373, 466, 1030
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	768, 772, 840
BstDEI	CTNAG	3 cut(s)	71, 557, 879
BstDSI	CCRYGG	1 cut(s)	420
BstKTI	GATC	5 cut(s)	412, 487, 530, 680, 988
BstMAI	GTCTC	2 cut(s)	205, 729
BstMBI	GATC	5 cut(s)	409, 484, 527, 677, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	334, 335
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	40, 1031
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	4 cut(s)	507, 690, 744, 947
BtgI	CCRYGG	1 cut(s)	420
BtrI	CACGTC	2 cut(s)	283, 367
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	2 cut(s)	1021, 1035
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	768, 772, 840
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	813
Cfr13I	GGNCC	3 cut(s)	505, 688, 1033
Cfr9I	CCCGGG	1 cut(s)	335
CviAII	CATG	3 cut(s)	77, 265, 502
DdeI	CTNAG	3 cut(s)	71, 557, 879
DpnI	GATC	5 cut(s)	411, 486, 529, 679, 987
DpnII	GATC	5 cut(s)	409, 484, 527, 677, 985
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	742
Eco147I	AGGCCT	1 cut(s)	947
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	1033
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	335
FaeI	CATG	3 cut(s)	80, 268, 505
FalI	AAGNNNNNCTT	3 cut(s)	37, 831, 863
FaqI	GGGAC	2 cut(s)	317, 940
FatI	CATG	3 cut(s)	76, 264, 501
FauNDI	CATATG	1 cut(s)	730
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	54, 1020
Fsp4HI	GCNGC	2 cut(s)	54, 1020
FspBI	CTAG	6 cut(s)	347, 525, 582, 717, 767, 780
GluI	GCNGC	2 cut(s)	54, 1020
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	4 cut(s)	507, 690, 744, 947
HapII	CCGG	2 cut(s)	336, 814
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	80, 268, 505
HincII	GTYRAC	2 cut(s)	9, 364
HindII	GTYRAC	2 cut(s)	9, 364
HindIII	AAGCTT	2 cut(s)	254, 840
HinfI	GANTC	3 cut(s)	449, 905, 953
HpaII	CCGG	2 cut(s)	336, 814
HphI	GGTGA	1 cut(s)	525
Hpy166II	GTNNAC	4 cut(s)	9, 167, 364, 1033
Hpy188I	TCNGA	5 cut(s)	252, 448, 590, 682, 895
Hpy188III	TCNNGA	4 cut(s)	548, 848, 909, 989
Hpy8I	GTNNAC	4 cut(s)	9, 167, 364, 1033
Hpy99I	CGWCG	2 cut(s)	10, 216
HpyAV	CCTTC	3 cut(s)	104, 626, 1004
HpyCH4III	ACNGT	4 cut(s)	63, 373, 466, 1030
HpyCH4IV	ACGT	4 cut(s)	90, 282, 366, 996
HpyCH4V	TGCA	6 cut(s)	43, 56, 521, 629, 736, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	3 cut(s)	71, 557, 879
HpySE526I	ACGT	4 cut(s)	90, 282, 366, 996
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	80, 268, 505
Kzo9I	GATC	5 cut(s)	409, 484, 527, 677, 985
LmnI	GCTCC	2 cut(s)	286, 682
Lsp1109I	GCAGC	2 cut(s)	40, 1031
MaeI	CTAG	6 cut(s)	347, 525, 582, 717, 767, 780
MaeII	ACGT	4 cut(s)	90, 282, 366, 996
MaeIII	GTNAC	2 cut(s)	367, 468
MalI	GATC	5 cut(s)	411, 486, 529, 679, 987
MboI	GATC	5 cut(s)	409, 484, 527, 677, 985
MboII	GAAGA	4 cut(s)	152, 250, 290, 587
MflI	RGATCY	1 cut(s)	985
MlsI	TGGCCA	1 cut(s)	744
MluCI	AATT	4 cut(s)	306, 377, 896, 1040
MluNI	TGGCCA	1 cut(s)	744
MlyI	GAGTC	1 cut(s)	962
MnlI	CCTC	9 cut(s)	185, 221, 354, 423, 535, 544, 552, 613, 976
Mox20I	TGGCCA	1 cut(s)	744
MscI	TGGCCA	1 cut(s)	744
MseI	TTAA	3 cut(s)	107, 312, 827
Msp20I	TGGCCA	1 cut(s)	744
MspI	CCGG	2 cut(s)	336, 814
MspR9I	CCNGG	2 cut(s)	336, 337
MwoI	GCNNNNNNNGC	1 cut(s)	635
NciI	CCSGG	2 cut(s)	336, 337
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	5 cut(s)	409, 484, 527, 677, 985
NheI	GCTAGC	1 cut(s)	766
NlaIII	CATG	3 cut(s)	80, 268, 505
NlaIV	GGNNCC	4 cut(s)	288, 637, 987, 1035
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	947
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	449, 905
PkrI	GCNGC	2 cut(s)	55, 1021
PleI	GAGTC	1 cut(s)	961
PpsI	GAGTC	1 cut(s)	961
PspFI	CCCAGC	1 cut(s)	598
PspN4I	GGNNCC	4 cut(s)	288, 637, 987, 1035
PspPI	GGNCC	3 cut(s)	505, 688, 1033
PsrI	GAACNNNNNNTAC	2 cut(s)	51, 83
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	985
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	3 cut(s)	107, 312, 827
SatI	GCNGC	2 cut(s)	54, 1020
Sau3AI	GATC	5 cut(s)	409, 484, 527, 677, 985
Sau96I	GGNCC	3 cut(s)	505, 688, 1033
SchI	GAGTC	1 cut(s)	962
ScrFI	CCNGG	2 cut(s)	336, 337
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	1033
SmaI	CCCGGG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
SpeI	ACTAGT	1 cut(s)	779
Sse9I	AATT	4 cut(s)	306, 377, 896, 1040
SseBI	AGGCCT	1 cut(s)	947
SspMI	CTAG	6 cut(s)	347, 525, 582, 717, 767, 780
StuI	AGGCCT	1 cut(s)	947
StyD4I	CCNGG	2 cut(s)	334, 335
TaaI	ACNGT	4 cut(s)	63, 373, 466, 1030
TaiI	ACGT	4 cut(s)	93, 285, 369, 999
TaqI	TCGA	4 cut(s)	8, 375, 402, 821
TasI	AATT	4 cut(s)	306, 377, 896, 1040
TfiI	GAWTC	2 cut(s)	449, 905
Tru1I	TTAA	3 cut(s)	107, 312, 827
Tru9I	TTAA	3 cut(s)	107, 312, 827
TscAI	CASTG	2 cut(s)	1021, 1035
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	53, 1019
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	5 cut(s)	93, 153, 663, 918, 951
TspGWI	ACGGA	2 cut(s)	437, 847
TspMI	CCCGGG	1 cut(s)	335
TspRI	CASTG	2 cut(s)	1021, 1035
VpaK11BI	GGWCC	1 cut(s)	1033
XapI	RAATTY	1 cut(s)	896
XceI	RCATGY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmaI	CCCGGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	6 cut(s)	347, 525, 582, 717, 767, 780
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.