Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002268.1

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Forward (+)

150306 .. 151596

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002268.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgaaagtttgcaggggatacgttgcgttgtctaggaagtctccatatgtgcaaactggccacagggaaaatgacctttcagaatttgatgaatcaagagaaatacttgagtgtttggttgatgaatataaggcctgtgagtccccagattacatcaaatggggaatggaggatccagaccacgttcttacaggagaaggcaatgcagcaggaacagtggacccaaaattggcagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

79

Amino Acids

8.84

Weight (kDa)

4.63

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	167, 180
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	167, 180
AoxI	GGCC	2 cut(s)	58, 132
ApeKI	GCWGC	2 cut(s)	206, 233
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	220
BalI	TGGCCA	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	207, 234
BlsI	GCNGC	2 cut(s)	208, 235
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	174, 222
BpuEI	CTTGAG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	218
BshFI	GGCC	2 cut(s)	60, 134
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	60, 134
Bsp143I	GATC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	60, 134
BspLI	GGNNCC	2 cut(s)	174, 222
BspPI	GGATC	2 cut(s)	167, 180
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	217
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	60, 134
BtsIMutI	CAGTG	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	2 cut(s)	60, 134
CviKI_1	RGCY	2 cut(s)	60, 134
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	220
FaeI	CATG	1 cut(s)	240
FaiI	YATR	4 cut(s)	46, 48, 129, 238
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	1 cut(s)	236
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	207, 234
Fsp4HI	GCNGC	2 cut(s)	207, 234
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	207, 234
HaeIII	GGCC	2 cut(s)	60, 134
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	2 cut(s)	92, 140
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	96, 176
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	21, 183
HpyCH4V	TGCA	3 cut(s)	12, 52, 206
HpySE526I	ACGT	2 cut(s)	21, 183
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	42, 49, 148, 159, 177, 189, 195
Lsp1109I	GCAGC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	21, 183
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MflI	RGATCY	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	2 cut(s)	83, 227
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	1 cut(s)	163
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	60
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	2 cut(s)	174, 222
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	208, 235
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	174, 222
PspPI	GGNCC	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	172
SatI	GCNGC	2 cut(s)	207, 234
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	149
SetI	ASST	3 cut(s)	24, 78, 186
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	83, 227
SseBI	AGGCCT	1 cut(s)	134
SspMI	CTAG	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	24, 186
TasI	AATT	2 cut(s)	83, 227
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	2 cut(s)	206, 233
TspDTI	ATGAA	3 cut(s)	17, 105, 138
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	83
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.