Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Reverse (-)

51162132 .. 51165244

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCTTACATGAGGACTCCTATGAGAGATCCTGGAGCAACGTCAATGCCTTACATGACAACTCCCATGAGAGATCCTGGAGCATCCCCAATGCGTTATATGATGACTCCTTACATGATGACCCCCAGAAGAGATCCCCCCCCGAGCAACACCAATACATGGTGGCATGAGAACTCCACCTATGACTCCCATGAGAGATCCCCGAGCAACACCGATACATGGTGGCATGAGGACCCCTCCTATATATTAGAGCTTGATTCAACTTTTGGTTTATCAAATGATGGTTGTCTGAGGATACGTGAAAGAAAGCTTCTTAACTTTATTGAGTGGGCCCCTGCAAGCATTCAGGTCGGTGGTCTTATGCTAGCCAGCCATCGCCACCTTTTCAGCAAGTGTTTTAGCCGGTATTCGTTGTTAAGAAGGAAGCAAGCTTTACTTGACAACTACCAGAAGTTCCCAATGTTTGCTGAGAATGACCTTTCAGAATTTGATGAATCAAGAGAAATACTCGCGTGTTTGGTTGATGAATATAAGGCCTGTGAGTCCCCAGATTACATCAAATGGGGAATGGAGGATCCAGACCACGTTCTTACAGGAGAAGGCAGTGCAACAGGAACAGTGGACCCAAAATTGGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

213

Amino Acids

24.64

Weight (kDa)

5.24

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccII	CGCG	1 cut(s)	512
AclWI	GGATC	6 cut(s)	23, 68, 128, 192, 569, 582
AcsI	RAATTY	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	159, 219, 631
AgsI	TTSAA	1 cut(s)	261
AjnI	CCWGG	2 cut(s)	31, 76
AluBI	AGCT	3 cut(s)	253, 310, 431
AluI	AGCT	3 cut(s)	253, 310, 431
AlwI	GGATC	6 cut(s)	23, 68, 128, 192, 569, 582
Ama87I	CYCGRG	2 cut(s)	142, 202
AoxI	GGCC	2 cut(s)	330, 534
ApaI	GGGCCC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	4 cut(s)	232, 330, 331, 622
AsuNHI	GCTAGC	1 cut(s)	364
AvaI	CYCGRG	2 cut(s)	142, 202
AvaII	GGWCC	2 cut(s)	232, 622
BaeGI	GKGCMC	1 cut(s)	334
BamHI	GGATCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	334
BccI	CCATC	2 cut(s)	275, 381
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	2 cut(s)	33, 78
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	33, 78
Bme18I	GGWCC	2 cut(s)	232, 622
BmeT110I	CYCGRG	2 cut(s)	142, 202
BmgT120I	GGNCC	4 cut(s)	232, 330, 331, 622
BmiI	GGNNCC	5 cut(s)	234, 332, 333, 576, 624
BmrFI	CCNGG	2 cut(s)	33, 78
BmsI	GCATC	1 cut(s)	92
BmtI	GCTAGC	1 cut(s)	368
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 492, 524
BpmI	CTGGAG	2 cut(s)	54, 99
BsaAI	YACGTR	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 219, 631
Bse118I	RCCGGY	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	33, 78
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	159, 219, 631
BseMII	CTCAG	2 cut(s)	281, 459
BseSI	GKGCMC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	2 cut(s)	332, 536
BsiHKCI	CYCGRG	2 cut(s)	142, 202
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	159, 219, 631
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	332, 536
BsoBI	CYCGRG	2 cut(s)	142, 202
Bsp120I	GGGCCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	5 cut(s)	28, 73, 133, 197, 574
BspANI	GGCC	2 cut(s)	332, 536
BspCNI	CTCAG	2 cut(s)	282, 460
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	5 cut(s)	234, 332, 333, 576, 624
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	6 cut(s)	23, 68, 128, 192, 569, 582
BsrFI	RCCGGY	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	402
BssMI	GATC	5 cut(s)	28, 73, 133, 197, 574
Bst2UI	CCWGG	2 cut(s)	33, 78
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	340, 366, 370, 429
BstDEI	CTNAG	2 cut(s)	290, 468
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	512
BstKTI	GATC	5 cut(s)	31, 76, 136, 200, 577
BstMBI	GATC	5 cut(s)	28, 73, 133, 197, 574
BstNI	CCWGG	2 cut(s)	33, 78
BstSCI	CCNGG	2 cut(s)	31, 76
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	512
BstX2I	RGATCY	5 cut(s)	28, 73, 133, 197, 574
BstYI	RGATCY	5 cut(s)	28, 73, 133, 197, 574
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	332, 536
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	610, 624
Cac8I	GCNNGC	4 cut(s)	340, 366, 370, 429
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	4 cut(s)	232, 330, 331, 622
CviAII	CATG	9 cut(s)	10, 55, 67, 115, 159, 167, 191, 219, 227
CviJI	RGCY	8 cut(s)	253, 310, 332, 368, 372, 402, 431, 536
CviKI_1	RGCY	8 cut(s)	253, 310, 332, 368, 372, 402, 431, 536
DdeI	CTNAG	2 cut(s)	290, 468
DpnI	GATC	5 cut(s)	30, 75, 135, 199, 576
DpnII	GATC	5 cut(s)	28, 73, 133, 197, 574
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	232, 622
Eco88I	CYCGRG	2 cut(s)	142, 202
EcoO109I	RGGNCCY	2 cut(s)	232, 331
EcoRII	CCWGG	2 cut(s)	31, 76
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	9 cut(s)	13, 58, 70, 118, 162, 170, 194, 222, 230
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	9 cut(s)	9, 54, 66, 114, 158, 166, 190, 218, 226
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	365
GsuI	CTGGAG	2 cut(s)	54, 99
HaeIII	GGCC	2 cut(s)	332, 536
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	9 cut(s)	13, 58, 70, 118, 162, 170, 194, 222, 230
HindIII	AAGCTT	2 cut(s)	308, 429
HinfI	GANTC	6 cut(s)	16, 106, 185, 257, 494, 542
HpaII	CCGG	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	2 cut(s)	291, 484
Hpy188III	TCNNGA	2 cut(s)	498, 578
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	2 cut(s)	414, 593
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	3 cut(s)	41, 298, 585
HpyCH4V	TGCA	2 cut(s)	338, 608
HpyF3I	CTNAG	2 cut(s)	290, 468
HpySE526I	ACGT	3 cut(s)	41, 298, 585
Hsp92II	CATG	9 cut(s)	13, 58, 70, 118, 162, 170, 194, 222, 230
Kzo9I	GATC	5 cut(s)	28, 73, 133, 197, 574
LmnI	GCTCC	2 cut(s)	35, 80
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	3 cut(s)	41, 298, 585
MalI	GATC	5 cut(s)	30, 75, 135, 199, 576
MboI	GATC	5 cut(s)	28, 73, 133, 197, 574
MboII	GAAGA	1 cut(s)	141
MflI	RGATCY	5 cut(s)	28, 73, 133, 197, 574
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	485, 629
MlyI	GAGTC	4 cut(s)	10, 100, 179, 551
MnlI	CCTC	5 cut(s)	6, 223, 247, 285, 565
MseI	TTAA	2 cut(s)	315, 416
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	33, 78
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	2 cut(s)	33, 78
MvnI	CGCG	1 cut(s)	512
NdeII	GATC	5 cut(s)	28, 73, 133, 197, 574
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	9 cut(s)	13, 58, 70, 118, 162, 170, 194, 222, 230
NlaIV	GGNNCC	5 cut(s)	234, 332, 333, 576, 624
PceI	AGGCCT	1 cut(s)	536
PctI	GAATGC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	257, 494
PflMI	CCANNNNNTGG	1 cut(s)	159
PfoI	TCCNGGA	2 cut(s)	31, 76
PleI	GAGTC	4 cut(s)	10, 100, 179, 550
PpsI	GAGTC	4 cut(s)	10, 100, 179, 550
Ppu21I	YACGTR	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	31, 76
PspGI	CCWGG	2 cut(s)	31, 76
PspN4I	GGNNCC	5 cut(s)	234, 332, 333, 576, 624
PspOMI	GGGCCC	1 cut(s)	330
PspPI	GGNCC	4 cut(s)	232, 330, 331, 622
PspPPI	RGGWCCY	1 cut(s)	232
PsuI	RGATCY	5 cut(s)	28, 73, 133, 197, 574
SaqAI	TTAA	2 cut(s)	315, 416
Sau3AI	GATC	5 cut(s)	28, 73, 133, 197, 574
Sau96I	GGNCC	4 cut(s)	232, 330, 331, 622
SchI	GAGTC	4 cut(s)	10, 100, 179, 551
ScrFI	CCNGG	2 cut(s)	33, 78
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	92
SinI	GGWCC	2 cut(s)	232, 622
Sse9I	AATT	2 cut(s)	485, 629
SseBI	AGGCCT	1 cut(s)	536
SspMI	CTAG	1 cut(s)	365
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	31, 76
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	3 cut(s)	44, 301, 588
TasI	AATT	2 cut(s)	485, 629
TfiI	GAWTC	2 cut(s)	257, 494
Tru1I	TTAA	2 cut(s)	315, 416
Tru9I	TTAA	2 cut(s)	315, 416
TscAI	CASTG	2 cut(s)	610, 624
TspDTI	ATGAA	2 cut(s)	507, 540
TspRI	CASTG	2 cut(s)	610, 624
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	232, 622
XapI	RAATTY	1 cut(s)	485
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.