Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Reverse (-)

49422436 .. 49427422

Gene Structure 4987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG274300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGTTCATCAGGAAGTAGTGATTATGGCAACTTTAAGAAGTGTGTCTGTTGAAATAGATGTCTGTAATACTTATCAAACTGAAATGCTGCAGGGAGGGGACAGAAAAGATGTGTTTTTCTACCAAGCTGATGATCAGCACTACATACCACGAGCTTTGCTGATTGATTTGGAGCCCAGAGTGATTAATGGTATTCAGAACAGTGACTATCGAAACCTCTACAATCATGAGAACATCTATGTTGCAGATCATGGAGGTGGTGCAGGAAATAATTGGGCGAGTGGATATGATCAGGGAAAAGGTGTTGAAGAGGCCATAATGGACATGATTGATAGAGAAGCAGATGGGAGTGATAGTCTTGAAGGATTTGTTCTTTGCCATTCAATTGCTGGTGGAACAGGCTCAGGAATGGGTTCCTATCTGTTGGAGACTTTGAATGATCGATACAGCAAAAAACTGGTTCAGACATACAGTGTATTTCCTAACCAGATGGAAACAAGTGATGTGGTGGTCCAGCCCTATAACTCACTTTTGACACTTAAGCGACTAACTCTGAATGCTGATTGTGTTGTCGTCCTTGATAACACTGCATTGAATAGAATTGCTGTTGAGCGCCTCCATCTCACAAATCCCACCTTTGCTCAAACAAATTCTTTGGTTTCTACTGTAATGTCTGCCAGCACAACCACTCTGAGATATCCAGGGTACATGAACAACGACTTGGTTGGTCTTCTTGCATCTTTGATTCCAACACCAAGATGCCATTTTCTAATGACAGGATATACACCCCTCACAGTCGAGCGCCAGGCTAATGTGATTCGTAAAACCACTGTACTTGATGTTATGAGAAGACTTCTGCAGACAAAAAATATCATGGTTTCCTCATATGCTCGAACAAAAGAAGCCAGTCAAGCAAAGTATATATCGATATTAAACATCATTCAAGGAGAAGTAGACCCTACTCAGGTTCATGAAAGTTTGCAGAGGATACGTGAAAGAAAGCTTGTTAACTTTATTGAGTGGGGCCCTGCAAGCATTCAGGTTGCTTTGTCTAGGAAGTCTCCATATGTACAAACTGCCCATAGGGTCAGTGGTCTTATGCTAGCCAGCCATACTAGTATTCGCCACCTTTTCAGCAAGTGTTTGAGCCAGTATTCGTTATTAAGAAAGAAGCAAGCTTTTCTTGACAACTACCGGAAGTTCCCTATGTTTGCTGTAAGTTGTTGCCTGCACAACTGTCAGTATTATTTCATACTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

420

Amino Acids

47.35

Weight (kDa)

7.18

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	28 - 202	1.9e-47	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	252 - 381	5.9e-45	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	954
AcsI	RAATTY	1 cut(s)	649
AfaI	GTAC	3 cut(s)	707, 834, 1071
AfiI	CCNNNNNNNGG	1 cut(s)	964
AflII	CTTAAG	1 cut(s)	539
AgsI	TTSAA	7 cut(s)	53, 308, 362, 384, 436, 595, 944
AhlI	ACTAGT	1 cut(s)	1115
AjnI	CCWGG	2 cut(s)	700, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	4 cut(s)	128, 155, 1003, 1178
AluI	AGCT	4 cut(s)	128, 155, 1003, 1178
Alw26I	GTCTC	2 cut(s)	422, 1065
AoxI	GGCC	2 cut(s)	312, 1024
ApaI	GGGCCC	1 cut(s)	1028
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	649
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	2 cut(s)	615, 804
AspS9I	GGNCC	3 cut(s)	511, 1024, 1025
AsuNHI	GCTAGC	1 cut(s)	1102
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	1028
BanII	GRGCYC	2 cut(s)	177, 1028
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	722, 856
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	3 cut(s)	338, 484, 627
BciT130I	CCWGG	2 cut(s)	702, 806
BciVI	GTATCC	1 cut(s)	981
BclI	TGATCA	2 cut(s)	133, 289
BcoDI	GTCTC	2 cut(s)	422, 1065
BcuI	ACTAGT	1 cut(s)	1115
BfaI	CTAG	3 cut(s)	1053, 1103, 1116
BfmI	CTRYAG	2 cut(s)	89, 857
BfoI	RGCGCY	2 cut(s)	616, 805
BfrI	CTTAAG	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	981
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	702, 806
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	3 cut(s)	511, 1024, 1025
BmiI	GGNNCC	4 cut(s)	174, 415, 1025, 1026
BmrFI	CCNGG	2 cut(s)	702, 806
BmsI	GCATC	2 cut(s)	746, 749
BmtI	GCTAGC	1 cut(s)	1106
BpiI	GAAGAC	2 cut(s)	722, 856
Bpu10I	CCTNAGC	1 cut(s)	403
Bsa29I	ATCGAT	2 cut(s)	442, 926
BsaAI	YACGTR	1 cut(s)	992
BsaJI	CCNNGG	1 cut(s)	701
BsaWI	WCCGGW	1 cut(s)	1194
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	964
Bse1I	ACTGG	3 cut(s)	462, 906, 1150
BseBI	CCWGG	2 cut(s)	702, 806
BseCI	ATCGAT	2 cut(s)	442, 926
BseDI	CCNNGG	1 cut(s)	701
BseLI	CCNNNNNNNGG	1 cut(s)	964
BseMII	CTCAG	3 cut(s)	417, 683, 977
BseNI	ACTGG	3 cut(s)	462, 906, 1150
BseSI	GKGCMC	1 cut(s)	1028
BseXI	GCAGC	1 cut(s)	75
BsgI	GTGCAG	2 cut(s)	282, 1214
BshFI	GGCC	2 cut(s)	314, 1026
BshVI	ATCGAT	2 cut(s)	442, 926
BsiSI	CCGG	1 cut(s)	1195
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	964
BsmAI	GTCTC	2 cut(s)	422, 1065
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	562, 1035
BsnI	GGCC	2 cut(s)	314, 1026
Bsp120I	GGGCCC	1 cut(s)	1024
Bsp1286I	GDGCHC	2 cut(s)	177, 1028
Bsp1407I	TGTACA	1 cut(s)	1069
Bsp143I	GATC	4 cut(s)	133, 247, 289, 439
BspANI	GGCC	2 cut(s)	314, 1026
BspCNI	CTCAG	3 cut(s)	416, 684, 976
BspDI	ATCGAT	2 cut(s)	442, 926
BspHI	TCATGA	2 cut(s)	226, 970
BspLI	GGNNCC	4 cut(s)	174, 415, 1025, 1026
BspMAI	CTGCAG	2 cut(s)	93, 861
BspOI	GCTAGC	1 cut(s)	1106
BspTI	CTTAAG	1 cut(s)	539
BsrGI	TGTACA	1 cut(s)	1069
BsrI	ACTGG	3 cut(s)	462, 906, 1150
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	4 cut(s)	133, 247, 289, 439
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	702, 806
Bst4CI	ACNGT	6 cut(s)	203, 473, 667, 796, 832, 1238
Bst6I	CTCTTC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	1069
BstBAI	YACGTR	1 cut(s)	992
BstC8I	GCNNGC	6 cut(s)	679, 1033, 1104, 1108, 1176, 1229
BstDEI	CTNAG	3 cut(s)	403, 692, 963
BstH2I	RGCGCY	2 cut(s)	616, 805
BstHHI	GCGC	2 cut(s)	615, 804
BstKTI	GATC	4 cut(s)	136, 250, 292, 442
BstMAI	GTCTC	2 cut(s)	422, 1065
BstMBI	GATC	4 cut(s)	133, 247, 289, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	911, 1032
BstNI	CCWGG	2 cut(s)	702, 806
BstSCI	CCNGG	2 cut(s)	700, 804
BstSFI	CTRYAG	2 cut(s)	89, 857
BstSLI	GKGCMC	1 cut(s)	1028
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	2 cut(s)	722, 856
Bsu15I	ATCGAT	2 cut(s)	442, 926
BsuI	GTATCC	1 cut(s)	981
BsuRI	GGCC	2 cut(s)	314, 1026
BsuTUI	ATCGAT	2 cut(s)	442, 926
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	5 cut(s)	208, 478, 585, 828, 1096
Cac8I	GCNNGC	6 cut(s)	679, 1033, 1104, 1108, 1176, 1229
CciI	TCATGA	2 cut(s)	226, 970
CfoI	GCGC	2 cut(s)	615, 804
Cfr13I	GGNCC	3 cut(s)	511, 1024, 1025
ClaI	ATCGAT	2 cut(s)	442, 926
Csp6I	GTAC	3 cut(s)	706, 833, 1070
CspCI	CAANNNNNGTGG	6 cut(s)	138, 173, 486, 521, 817, 852
CviAII	CATG	6 cut(s)	227, 251, 325, 709, 874, 971
CviQI	GTAC	3 cut(s)	706, 833, 1070
DdeI	CTNAG	3 cut(s)	403, 692, 963
DpnI	GATC	4 cut(s)	135, 249, 291, 441
DpnII	GATC	4 cut(s)	133, 247, 289, 439
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	177, 1028
Eco32I	GATATC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	511
EcoO109I	RGGNCCY	2 cut(s)	1024, 1025
EcoRII	CCWGG	2 cut(s)	700, 804
EcoRV	GATATC	1 cut(s)	698
EcoT38I	GRGCYC	2 cut(s)	177, 1028
FaeI	CATG	6 cut(s)	230, 254, 328, 712, 877, 974
FalI	AAGNNNNNCTT	2 cut(s)	1167, 1199
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	6 cut(s)	226, 250, 324, 708, 873, 970
FauNDI	CATATG	2 cut(s)	886, 1066
FbaI	TGATCA	2 cut(s)	133, 289
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	1 cut(s)	89
FriOI	GRGCYC	2 cut(s)	177, 1028
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	3 cut(s)	1053, 1103, 1116
GlaI	GCGC	2 cut(s)	614, 803
GluI	GCNGC	1 cut(s)	89
HaeII	RGCGCY	2 cut(s)	616, 805
HaeIII	GGCC	2 cut(s)	314, 1026
HapII	CCGG	1 cut(s)	1195
HhaI	GCGC	2 cut(s)	615, 804
Hin1II	CATG	6 cut(s)	230, 254, 328, 712, 877, 974
Hin6I	GCGC	2 cut(s)	613, 802
HinP1I	GCGC	2 cut(s)	613, 802
HincII	GTYRAC	1 cut(s)	1009
HindII	GTYRAC	1 cut(s)	1009
HindIII	AAGCTT	2 cut(s)	1001, 1176
HinfI	GANTC	2 cut(s)	745, 817
HpaI	GTTAAC	1 cut(s)	1009
HpaII	CCGG	1 cut(s)	1195
Hpy166II	GTNNAC	2 cut(s)	955, 1009
Hpy188I	TCNGA	4 cut(s)	198, 465, 555, 693
Hpy188III	TCNNGA	6 cut(s)	11, 227, 359, 405, 971, 1184
Hpy8I	GTNNAC	2 cut(s)	955, 1009
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	6 cut(s)	203, 473, 667, 796, 832, 1238
HpyCH4IV	ACGT	1 cut(s)	991
HpyCH4V	TGCA	9 cut(s)	91, 245, 263, 590, 737, 859, 982, 1031, 1231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	911, 1032
HpyF3I	CTNAG	3 cut(s)	403, 692, 963
HpySE526I	ACGT	1 cut(s)	991
Hsp92II	CATG	6 cut(s)	230, 254, 328, 712, 877, 974
HspAI	GCGC	2 cut(s)	613, 802
Ksp22I	TGATCA	2 cut(s)	133, 289
KspAI	GTTAAC	1 cut(s)	1009
Kzo9I	GATC	4 cut(s)	133, 247, 289, 439
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	2 cut(s)	746, 749
MaeI	CTAG	3 cut(s)	1053, 1103, 1116
MaeII	ACGT	1 cut(s)	991
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	135, 249, 291, 441
MboI	GATC	4 cut(s)	133, 247, 289, 439
MboII	GAAGA	3 cut(s)	320, 722, 861
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	177, 1028
MluCI	AATT	4 cut(s)	271, 384, 600, 649
MmeI	TCCRAC	2 cut(s)	405, 773
MnlI	CCTC	8 cut(s)	89, 227, 248, 304, 626, 800, 892, 978
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	6 cut(s)	35, 186, 540, 932, 1008, 1163
MslI	CAYNNNNRTG	2 cut(s)	255, 757
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	1 cut(s)	1195
MspR9I	CCNGG	2 cut(s)	702, 806
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	2 cut(s)	562, 1035
MvaI	CCWGG	2 cut(s)	702, 806
MwoI	GCNNNNNNNGC	2 cut(s)	911, 1032
NdeI	CATATG	2 cut(s)	886, 1066
NdeII	GATC	4 cut(s)	133, 247, 289, 439
NheI	GCTAGC	1 cut(s)	1102
NlaIII	CATG	6 cut(s)	230, 254, 328, 712, 877, 974
NlaIV	GGNNCC	4 cut(s)	174, 415, 1025, 1026
NmuCI	GTSAC	1 cut(s)	203
PagI	TCATGA	2 cut(s)	226, 970
PctI	GAATGC	2 cut(s)	562, 1035
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	745, 817
PkrI	GCNGC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	992
PshBI	ATTAAT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	700, 804
PspGI	CCWGG	2 cut(s)	700, 804
PspN4I	GGNNCC	4 cut(s)	174, 415, 1025, 1026
PspOMI	GGGCCC	1 cut(s)	1024
PspPI	GGNCC	3 cut(s)	511, 1024, 1025
PstI	CTGCAG	2 cut(s)	93, 861
RsaI	GTAC	3 cut(s)	707, 834, 1071
RsaNI	GTAC	3 cut(s)	706, 833, 1070
RseI	CAYNNNNRTG	2 cut(s)	255, 757
SaqAI	TTAA	6 cut(s)	35, 186, 540, 932, 1008, 1163
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	4 cut(s)	133, 247, 289, 439
Sau96I	GGNCC	3 cut(s)	511, 1024, 1025
ScrFI	CCNGG	2 cut(s)	702, 806
SduI	GDGCHC	2 cut(s)	177, 1028
SfaNI	GCATC	2 cut(s)	746, 749
SfcI	CTRYAG	2 cut(s)	89, 857
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	255, 757
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SpeI	ACTAGT	1 cut(s)	1115
Sse9I	AATT	4 cut(s)	271, 384, 600, 649
SspMI	CTAG	3 cut(s)	1053, 1103, 1116
StyD4I	CCNGG	2 cut(s)	700, 804
TaaI	ACNGT	6 cut(s)	203, 473, 667, 796, 832, 1238
TaiI	ACGT	1 cut(s)	994
TaqI	TCGA	6 cut(s)	211, 442, 798, 892, 926, 1257
TasI	AATT	4 cut(s)	271, 384, 600, 649
TatI	WGTACW	2 cut(s)	832, 1069
TfiI	GAWTC	2 cut(s)	745, 817
Tru1I	TTAA	6 cut(s)	35, 186, 540, 932, 1008, 1163
Tru9I	TTAA	6 cut(s)	35, 186, 540, 932, 1008, 1163
TscAI	CASTG	5 cut(s)	208, 478, 592, 835, 1096
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	725, 959, 987, 1240
TspRI	CASTG	5 cut(s)	208, 478, 592, 835, 1096
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	2 cut(s)	386, 1088
XmiI	GTMKAC	1 cut(s)	954
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	3 cut(s)	1053, 1103, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.