Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031640.1

Orthogroup ID

OG0004395

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2045

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031640.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgcctcgggagatcatcacattgcaggtgggacaatgcggcaaccagatcggaatggagttctggaagcagctctgcctcgagcacggtatcagcaaagaaggcattctcgaagactttgccactcagggaggggacagaaaagatgtgtttttctaccaagctgatgatcagcactacataccacgagctttgctgattgatttggagcccagagtgattaatggtattcagaacagtgactatcgaaacctctacaatcatgagaacatctatgttgcagatcatggaggtggtgcaggaaataattgggccagtggatatgatcagggaaaaggtgttgaagaggccataatggacatgattgatagagaagcagatgggagtgatagtcttgaaggatttgttctttgccattcaattgctggtggaacaggctcaggaatgggttcctatctattggagactttgaatgatcgatacagcaaaaaactggttcagacatacagtgtatttcctaaccagatggaaacaagtgatgtggtggtccagccctataactcacttttgacacttaagcgactaactctgaatgctgattgtgttgtcgtccttgataacactgcattgaatagaattgctgtcgagcgcctccatctcacaaatcccacctttgctcaaacaaattctttggtttctactgtaatgtctgccagcacaaccactctgagatatccagggtacatgaacaatgacttggttggtcttcttgcatctttgattccaacaccaagatgccattttctaatgacaggatatacacccctcacagtcgagcgccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

281

Amino Acids

31.18

Weight (kDa)

4.87

Isoelectric Point (pI)

19.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61650 AT5G05620
fragaria_vesca	FvH4_7g15920
malus_domestica	MD01G1076100.v1.1 MD07G1145100.v1.1
prunus_persica	Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.1G559600_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.2G100900_v2.0.a1 Prupe.8G052800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358791
rosa_laevigata	RLG00000027923
rosa_multiflora	Rmu_sc0001063.1_g000016 Rmu_sc0002268.1_g000034 Rmu_sc0003660.1_g000005 Rmu_sc0004799.1_g000013 Rmu_sc0008757.1_g000022 Rmu_sc0031640.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297630
rosa_rugosa	Rorug01G0265000 Rorug01G0265300
rosa_samantha	Rh1AG279400 Rh1BG245900 Rh1CG262700 Rh1CG263300 Rh1DG274300
rosa_wichuraiana	Rw1G024770 Rw1G024830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	685
AfaI	GTAC	1 cut(s)	743
AflII	CTTAAG	1 cut(s)	575
AgsI	TTSAA	5 cut(s)	344, 398, 420, 472, 631
AjnI	CCWGG	1 cut(s)	736
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AluBI	AGCT	3 cut(s)	73, 164, 191
AluI	AGCT	3 cut(s)	73, 164, 191
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	458
Ama87I	CYCGRG	2 cut(s)	6, 80
AoxI	GGCC	2 cut(s)	312, 348
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	685
AseI	ATTAAT	1 cut(s)	222
Asp700I	GAANNNNTTC	2 cut(s)	105, 448
AspLEI	GCGC	2 cut(s)	651, 840
AspS9I	GGNCC	2 cut(s)	312, 547
AvaI	CYCGRG	2 cut(s)	6, 80
AvaII	GGWCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	2 cut(s)	120, 758
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	374, 520, 663
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 101, 135
BciT130I	CCWGG	1 cut(s)	738
BclI	TGATCA	2 cut(s)	169, 325
BcoDI	GTCTC	1 cut(s)	458
BfoI	RGCGCY	2 cut(s)	652, 841
BfrI	CTTAAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	40, 71
BlsI	GCNGC	2 cut(s)	41, 72
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	547
BmeT110I	CYCGRG	2 cut(s)	6, 80
BmgT120I	GGNCC	2 cut(s)	312, 547
BmiI	GGNNCC	2 cut(s)	210, 451
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	2 cut(s)	782, 785
BpiI	GAAGAC	2 cut(s)	120, 758
Bpu10I	CCTNAGC	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	5, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bse1I	ACTGG	2 cut(s)	315, 498
Bse3DI	GCAATG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	5, 737
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	3 cut(s)	140, 453, 719
BseNI	ACTGG	2 cut(s)	315, 498
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	314, 350
BshVI	ATCGAT	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	2 cut(s)	6, 80
BslFI	GGGAC	2 cut(s)	45, 149
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	45, 149
BsmI	GAATGC	2 cut(s)	105, 598
BsnI	GGCC	2 cut(s)	314, 350
BsoBI	CYCGRG	2 cut(s)	6, 80
Bsp1286I	GDGCHC	2 cut(s)	87, 213
Bsp143I	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	314, 350
BspCNI	CTCAG	3 cut(s)	139, 452, 720
BspDI	ATCGAT	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	210, 451
BspMI	ACCTGC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	315, 498
BssECI	CCNNGG	2 cut(s)	5, 737
BssMI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	5 cut(s)	89, 239, 509, 703, 832
Bst6I	CTCTTC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	715
BstDEI	CTNAG	3 cut(s)	126, 439, 728
BstH2I	RGCGCY	2 cut(s)	652, 841
BstHHI	GCGC	2 cut(s)	651, 840
BstKTI	GATC	6 cut(s)	15, 51, 172, 286, 328, 478
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	736
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	2 cut(s)	120, 758
Bsu15I	ATCGAT	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	314, 350
BsuTUI	ATCGAT	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	4 cut(s)	244, 322, 514, 621
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	715
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	2 cut(s)	651, 840
Cfr13I	GGNCC	2 cut(s)	312, 547
ClaI	ATCGAT	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	742
CspCI	CAANNNNNGTGG	4 cut(s)	174, 209, 522, 557
CviAII	CATG	4 cut(s)	263, 287, 361, 745
CviJI	RGCY	8 cut(s)	73, 164, 191, 211, 314, 350, 438, 553
CviKI_1	RGCY	8 cut(s)	73, 164, 191, 211, 314, 350, 438, 553
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	3 cut(s)	126, 439, 728
DpnI	GATC	6 cut(s)	14, 50, 171, 285, 327, 477
DpnII	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	547
Eco88I	CYCGRG	2 cut(s)	6, 80
EcoRII	CCWGG	1 cut(s)	736
EcoRV	GATATC	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	4 cut(s)	266, 290, 364, 748
FaqI	GGGAC	2 cut(s)	45, 149
FatI	CATG	4 cut(s)	262, 286, 360, 744
FbaI	TGATCA	2 cut(s)	169, 325
Fnu4HI	GCNGC	2 cut(s)	40, 71
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	40, 71
GlaI	GCGC	2 cut(s)	650, 839
GluI	GCNGC	2 cut(s)	40, 71
HaeII	RGCGCY	2 cut(s)	652, 841
HaeIII	GGCC	2 cut(s)	314, 350
HhaI	GCGC	2 cut(s)	651, 840
Hin1II	CATG	4 cut(s)	266, 290, 364, 748
Hin6I	GCGC	2 cut(s)	649, 838
HinP1I	GCGC	2 cut(s)	649, 838
HinfI	GANTC	1 cut(s)	781
Hpy188I	TCNGA	5 cut(s)	53, 234, 501, 591, 729
Hpy188III	TCNNGA	6 cut(s)	8, 64, 110, 263, 395, 441
HpyAV	CCTTC	2 cut(s)	95, 392
HpyCH4III	ACNGT	5 cut(s)	89, 239, 509, 703, 832
HpyCH4V	TGCA	5 cut(s)	25, 281, 299, 626, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	3 cut(s)	126, 439, 728
Hsp92II	CATG	4 cut(s)	266, 290, 364, 748
HspAI	GCGC	2 cut(s)	649, 838
Ksp22I	TGATCA	2 cut(s)	169, 325
Kzo9I	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	782, 785
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	6 cut(s)	14, 50, 171, 285, 327, 477
MboI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
MboII	GAAGA	3 cut(s)	125, 356, 758
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	2 cut(s)	87, 213
MluCI	AATT	4 cut(s)	307, 420, 636, 685
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	8 cut(s)	15, 89, 125, 263, 284, 340, 662, 836
MroXI	GAANNNNTTC	2 cut(s)	105, 448
MseI	TTAA	2 cut(s)	222, 576
MslI	CAYNNNNRTG	2 cut(s)	291, 793
MspCI	CTTAAG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	738
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	2 cut(s)	105, 598
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
NlaIII	CATG	4 cut(s)	266, 290, 364, 748
NlaIV	GGNNCC	2 cut(s)	210, 451
NmuCI	GTSAC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	16
PctI	GAATGC	2 cut(s)	105, 598
PdmI	GAANNNNTTC	2 cut(s)	105, 448
PfeI	GAWTC	1 cut(s)	781
PkrI	GCNGC	2 cut(s)	41, 72
PshBI	ATTAAT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	2 cut(s)	210, 451
PspPI	GGNCC	2 cut(s)	312, 547
PspXI	VCTCGAGB	1 cut(s)	80
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
RseI	CAYNNNNRTG	2 cut(s)	291, 793
SaqAI	TTAA	2 cut(s)	222, 576
SatI	GCNGC	2 cut(s)	40, 71
Sau3AI	GATC	6 cut(s)	12, 48, 169, 283, 325, 475
Sau96I	GGNCC	2 cut(s)	312, 547
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	87, 213
SetI	ASST	8 cut(s)	30, 75, 166, 193, 255, 295, 340, 674
SfaNI	GCATC	2 cut(s)	782, 785
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	291, 793
SmlI	CTYRAG	2 cut(s)	80, 575
SmoI	CTYRAG	2 cut(s)	80, 575
Sse9I	AATT	4 cut(s)	307, 420, 636, 685
SsiI	CCGC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	5 cut(s)	89, 239, 509, 703, 832
TaqI	TCGA	6 cut(s)	81, 111, 247, 478, 645, 834
TasI	AATT	4 cut(s)	307, 420, 636, 685
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	2 cut(s)	222, 576
Tru9I	TTAA	2 cut(s)	222, 576
TscAI	CASTG	4 cut(s)	244, 322, 514, 628
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	761
TspRI	CASTG	4 cut(s)	244, 322, 514, 628
Vha464I	CTTAAG	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	547
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	80
XmnI	GAANNNNTTC	2 cut(s)	105, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.