Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

23150779 .. 23153649

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGATTCGGTGGTCGGAGCTGTGTATCGTACTGTTCGCTCTTTCCTACGCCATCTGCGTCCTTGCCGGGAAGAGTTACTACGATGTGTTGCAAGTCCCGAAAGGTGCATCTGATGAACAGATCAAGAGAGCTTATAGGAAACTAGCTTTGAAGTATCATCCCGATAAGAATCAAGGAAATGAGGAAGCGACTCGCAAATTCGCTGAGATCAACAATGCTTATGAAGTGTTATCGGATGAGGAGAAGAGGGAGATATATAACAAGTATGGTGAAGAGGGACTTAAACAGTTTTCTGCAAATGGAGGAAGAGGAGGAGGAGGAGGCGGCATGAATATGCAGGACATCTTCAGCTCGTTTTTTGGTGGAGGTTCGATGGAGGAAGAAGAGAAGGTTGTCAAGGGGGATGACGTAATTGTGGAACTTGAGGCAACTCTAGAAGATTTGTACATGGGAGGCTCTATGAAGGTATGGAGGGAAAAGAATGTGATAAAACCAGCTCCTGGAAAGAGAAAGTGTAACTGCAGGAACGAGGTCTATCACAGACAAATTGGTCCTGGAATGTTCCAACAGATGACAGAGCAGGTCTGTGACAAATGCCCTAATGTCAAATACGAACGGGAGGGATACTTTGTGACAGTTGATATCGAGAAAGGAATGAAAGATGGAGAAGAAGTGTCTTTCTATGAAGACGGCGAACCCATTCTTGACGGTGACCCTGGTGACCTTAAGTTCCGAATCAGAACTGCACCACATGCCCGTTTCAGAAGGGATGGCAACGATCTACACATGAACGTGAACATTACACTGGTTGAGGCGCTAGTTGGTTTTGAGAAATCATTCAAACACTTGGATGATCACGAAGTTGACATCAGTTCCAAGGGAATTACAAAGCCGAAGGAAGTAAAGAAGTTCAAAGGAGAAGGGATGCCACTTCACTACAGCACAAAGAAAGGCAACCTCTTTGTCACTTTTGAGGTTTTGTTTCCGTCTTCTCTCACTGACGATCAGAAGAAGAAGATTAAAGAAGTCTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

346

Amino Acids

39.2

Weight (kDa)

5.93

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	26 - 88	3.9e-29	DnaJ domain
DnaJ_C	PF01556	140 - 330	1.1e-34	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	552
Acc36I	ACCTGC	1 cut(s)	574
AccB7I	CCANNNNNTGG	1 cut(s)	503
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	33, 449
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflII	CTTAAG	1 cut(s)	728
AgsI	TTSAA	3 cut(s)	154, 844, 916
AjnI	CCWGG	3 cut(s)	502, 556, 718
AluBI	AGCT	5 cut(s)	22, 134, 149, 354, 500
AluI	AGCT	5 cut(s)	22, 134, 149, 354, 500
AlwNI	CAGNNNCTG	1 cut(s)	503
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	2 cut(s)	702, 839
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	1 cut(s)	554
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	284, 725, 734
AvaII	GGWCC	1 cut(s)	554
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	2 cut(s)	696, 984
BccI	CCATC	4 cut(s)	62, 370, 659, 767
BceAI	ACGGC	1 cut(s)	709
BciT130I	CCWGG	3 cut(s)	504, 558, 720
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	3 cut(s)	146, 437, 821
BfmI	CTRYAG	2 cut(s)	523, 940
BfoI	RGCGCY	1 cut(s)	821
BfrI	CTTAAG	1 cut(s)	728
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	4 cut(s)	70, 504, 558, 720
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmrFI	CCNGG	4 cut(s)	70, 504, 558, 720
BmsI	GCATC	2 cut(s)	119, 918
BpiI	GAAGAC	2 cut(s)	696, 984
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	718, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	3 cut(s)	504, 558, 720
BseDI	CCNNGG	2 cut(s)	718, 879
BseGI	GGATG	6 cut(s)	160, 244, 412, 778, 859, 933
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	5 cut(s)	257, 327, 330, 333, 336
BsgI	GTGCAG	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	83, 294
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	2 cut(s)	83, 294
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	5 cut(s)	123, 210, 781, 856, 1006
BspACI	CCGC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	527
BspMI	ACCTGC	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	728
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	813
BssECI	CCNNGG	2 cut(s)	718, 879
BssMI	GATC	5 cut(s)	123, 210, 781, 856, 1006
BssT1I	CCWWGG	1 cut(s)	879
Bst2UI	CCWGG	3 cut(s)	504, 558, 720
Bst4CI	ACNGT	4 cut(s)	36, 291, 640, 713
Bst6I	CTCTTC	5 cut(s)	68, 242, 270, 304, 381
BstAFI	CTTAAG	1 cut(s)	728
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	207, 1038
BstEII	GGTNACC	2 cut(s)	713, 722
BstF5I	GGATG	6 cut(s)	160, 244, 412, 778, 859, 933
BstH2I	RGCGCY	1 cut(s)	821
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	5 cut(s)	126, 213, 784, 859, 1009
BstMBI	GATC	5 cut(s)	123, 210, 781, 856, 1006
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNI	CCWGG	3 cut(s)	504, 558, 720
BstNSI	RCATGY	1 cut(s)	758
BstPI	GGTNACC	2 cut(s)	713, 722
BstSCI	CCNGG	4 cut(s)	68, 502, 556, 718
BstSFI	CTRYAG	2 cut(s)	523, 940
BstV2I	GAAGAC	2 cut(s)	696, 984
BsuI	GTATCC	1 cut(s)	620
BtsCI	GGATG	6 cut(s)	160, 244, 412, 778, 859, 933
BtsIMutI	CAGTG	2 cut(s)	806, 999
BveI	ACCTGC	1 cut(s)	574
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	820
Cfr13I	GGNCC	1 cut(s)	554
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	32, 448
CviAII	CATG	4 cut(s)	331, 451, 755, 790
CviJI	RGCY	7 cut(s)	22, 134, 149, 354, 459, 500, 895
CviKI_1	RGCY	7 cut(s)	22, 134, 149, 354, 459, 500, 895
CviQI	GTAC	2 cut(s)	32, 448
DdeI	CTNAG	2 cut(s)	207, 1038
DpnI	GATC	5 cut(s)	125, 212, 783, 858, 1008
DpnII	GATC	5 cut(s)	123, 210, 781, 856, 1006
DrdI	GACNNNNNNGTC	1 cut(s)	552
DseDI	GACNNNNNNGTC	1 cut(s)	552
Eam1104I	CTCTTC	5 cut(s)	68, 242, 270, 304, 381
EarI	CTCTTC	5 cut(s)	68, 242, 270, 304, 381
Eco130I	CCWWGG	1 cut(s)	879
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	334
Eco91I	GGTNACC	2 cut(s)	713, 722
EcoO65I	GGTNACC	2 cut(s)	713, 722
EcoRII	CCWGG	3 cut(s)	502, 556, 718
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	879
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	4 cut(s)	334, 454, 758, 793
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	83, 294
FatI	CATG	4 cut(s)	330, 450, 754, 789
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	6 cut(s)	147, 251, 419, 785, 866, 940
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	3 cut(s)	146, 437, 821
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	821
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	820
Hin1II	CATG	4 cut(s)	334, 454, 758, 793
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HinfI	GANTC	4 cut(s)	7, 172, 193, 738
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	3 cut(s)	284, 725, 734
Hpy166II	GTNNAC	2 cut(s)	799, 868
Hpy188I	TCNGA	7 cut(s)	19, 115, 238, 737, 743, 767, 1011
Hpy188III	TCNNGA	7 cut(s)	100, 127, 164, 437, 649, 707, 860
Hpy8I	GTNNAC	2 cut(s)	799, 868
HpyAV	CCTTC	5 cut(s)	385, 460, 762, 892, 917
HpyCH4III	ACNGT	4 cut(s)	36, 291, 640, 713
HpyCH4IV	ACGT	2 cut(s)	411, 795
HpyCH4V	TGCA	6 cut(s)	94, 110, 299, 340, 525, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	2 cut(s)	207, 1038
HpySE526I	ACGT	2 cut(s)	411, 795
Hsp92II	CATG	4 cut(s)	334, 454, 758, 793
HspAI	GCGC	1 cut(s)	818
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	5 cut(s)	123, 210, 781, 856, 1006
LmnI	GCTCC	2 cut(s)	19, 505
LweI	GCATC	2 cut(s)	119, 918
MaeI	CTAG	3 cut(s)	146, 437, 821
MaeII	ACGT	2 cut(s)	411, 795
MaeIII	GTNAC	7 cut(s)	77, 518, 590, 634, 713, 722, 967
MalI	GATC	5 cut(s)	125, 212, 783, 858, 1008
MboI	GATC	5 cut(s)	123, 210, 781, 856, 1006
MluCI	AATT	4 cut(s)	200, 414, 549, 885
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	592
MroXI	GAANNNNTTC	2 cut(s)	702, 839
MseI	TTAA	3 cut(s)	285, 729, 1023
MslI	CAYNNNNRTG	3 cut(s)	335, 794, 852
MspCI	CTTAAG	1 cut(s)	728
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	4 cut(s)	70, 504, 558, 720
MvaI	CCWGG	3 cut(s)	504, 558, 720
MwoI	GCNNNNNNNGC	1 cut(s)	755
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	5 cut(s)	123, 210, 781, 856, 1006
NlaIII	CATG	4 cut(s)	334, 454, 758, 793
NmuCI	GTSAC	5 cut(s)	590, 634, 713, 722, 967
NspI	RCATGY	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	702, 839
PfeI	GAWTC	3 cut(s)	7, 172, 738
PflMI	CCANNNNNTGG	1 cut(s)	503
PfoI	TCCNGGA	2 cut(s)	502, 556
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	3 cut(s)	502, 556, 718
PspEI	GGTNACC	2 cut(s)	713, 722
PspGI	CCWGG	3 cut(s)	502, 556, 718
PspPI	GGNCC	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	527
PstNI	CAGNNNCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	33, 449
RsaNI	GTAC	2 cut(s)	32, 448
RseI	CAYNNNNRTG	3 cut(s)	335, 794, 852
SaqAI	TTAA	3 cut(s)	285, 729, 1023
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	5 cut(s)	123, 210, 781, 856, 1006
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	4 cut(s)	70, 504, 558, 720
SfaNI	GCATC	2 cut(s)	119, 918
SfcI	CTRYAG	2 cut(s)	523, 940
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	3 cut(s)	335, 794, 852
SmlI	CTYRAG	2 cut(s)	425, 728
SmoI	CTYRAG	2 cut(s)	425, 728
Sse9I	AATT	4 cut(s)	200, 414, 549, 885
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	3 cut(s)	146, 437, 821
StyD4I	CCNGG	4 cut(s)	68, 502, 556, 718
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	4 cut(s)	36, 291, 640, 713
TaiI	ACGT	2 cut(s)	414, 798
TaqI	TCGA	2 cut(s)	374, 648
TasI	AATT	4 cut(s)	200, 414, 549, 885
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	7, 172, 738
Tru1I	TTAA	3 cut(s)	285, 729, 1023
Tru9I	TTAA	3 cut(s)	285, 729, 1023
TscAI	CASTG	2 cut(s)	813, 1006
TseFI	GTSAC	5 cut(s)	590, 634, 713, 722, 967
Tsp45I	GTSAC	5 cut(s)	590, 634, 713, 722, 967
TspDTI	ATGAA	7 cut(s)	132, 240, 347, 479, 674, 702, 806
TspGWI	ACGGA	1 cut(s)	978
TspRI	CASTG	2 cut(s)	813, 1006
Van91I	CCANNNNNTGG	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	436
XceI	RCATGY	1 cut(s)	758
XmnI	GAANNNNTTC	2 cut(s)	702, 839
XspI	CTAG	3 cut(s)	146, 437, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.