Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

70165934 .. 70169399

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG501900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGAAGCAAATACGGAAGGTGTTGCTGCTGCTTCTGTTGTGCGCTCTGTGCCACGCTCTCACGGCCATTGCAGGGAAGAGCTATTACGAGACACTGCAGGTGCCAAAGGGAGCCTCCGACGAGCAGATCAAGAGGGCCTACAGAAAGCTCGCCTTGAAGTACCATCCCGATAAGAACCAGGGCAATGAGGAGGCCAATCAACGATTCGCAGACATTAACAACGCCTACGAGGTGCTTTCCGATAGTGAGAAGAGGAGCATTTACGATAGGTATGGAGAAGACGGTCTCAAACAGCACGCCGCCAGTGGAGGAAGAGGTGGTGGAGGCATGGGAATGAACATCAATGACATCTTCGCCGATTTCTTTGGTGGTGGACGCTCTGCTGAAGAGGAAGATAAAATCGTCAAGGGTGATGATGTAGTCATCGAATTGGATGCATCATTGGAAGACCTCTATATGGGAGGTTCATTGCAGGTTTGGAGGGAGAAGAACGTTATAAAGCCAGCACCAGGAAAGAGACGTTGTAACTGTAGAAATGAGGTCTATCACAGGCAAATCGGTCCGGGAATGTTCCAACAGATGACGGAACAGGTCTGCGAACAATGTAACAATTTTAAATATGAAAGGGAGGGATATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGACAAGTAAGCTTTCATTCTTCATATTTTCTTCCAAGATTTGGAACTTGGTTATATCAGTTAACAAGGGATACTTCTTCCTTGTACATTTACAGAGAAAATCAAATCCTATGTTTCCATTTATTTAGTTCTGTTTCATGTGCATGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

275

Amino Acids

31.32

Weight (kDa)

6.33

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	28 - 90	2.2e-28	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	2 cut(s)	91, 466
AccB1I	GGYRCC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	716
AciI	CCGC	1 cut(s)	303
AclI	AACGTT	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	164, 761
AfiI	CCNNNNNNNGG	4 cut(s)	75, 460, 512, 716
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	180, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	84, 151, 687
AluI	AGCT	3 cut(s)	84, 151, 687
Alw26I	GTCTC	3 cut(s)	86, 293, 514
AoxI	GGCC	3 cut(s)	66, 138, 195
ApeKI	GCWGC	2 cut(s)	28, 31
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	138, 563
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
BbsI	GAAGAC	2 cut(s)	288, 456
BbvI	GCAGC	2 cut(s)	15, 18
BccI	CCATC	2 cut(s)	174, 668
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	182, 513
BciVI	GTATCC	1 cut(s)	739
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	86, 293, 514
BfmI	CTRYAG	3 cut(s)	98, 142, 532
BfuAI	ACCTGC	2 cut(s)	91, 466
BfuI	GTATCC	1 cut(s)	739
BisI	GCNGC	3 cut(s)	29, 32, 303
BlsI	GCNGC	3 cut(s)	30, 33, 304
Bme1390I	CCNGG	3 cut(s)	182, 513, 567
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	138, 563
BmiI	GGNNCC	2 cut(s)	105, 115
BmrFI	CCNGG	3 cut(s)	182, 513, 567
BmsI	GCATC	3 cut(s)	427, 449, 657
BpiI	GAAGAC	2 cut(s)	288, 456
BpuMI	CCSGG	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 460, 512, 716
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	3 cut(s)	69, 193, 470
BseBI	CCWGG	2 cut(s)	182, 513
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	166, 442, 672
BseLI	CCNNNNNNNGG	4 cut(s)	75, 460, 512, 716
BseMI	GCAATG	3 cut(s)	69, 193, 470
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	206, 271
BseXI	GCAGC	2 cut(s)	15, 18
BshFI	GGCC	3 cut(s)	68, 140, 197
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	4 cut(s)	75, 460, 512, 716
BsmAI	GTCTC	3 cut(s)	86, 293, 514
BsmBI	CGTCTC	1 cut(s)	514
BsnI	GGCC	3 cut(s)	68, 140, 197
Bso31I	GGTCTC	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	3 cut(s)	68, 140, 197
BspLI	GGNNCC	2 cut(s)	105, 115
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	2 cut(s)	91, 466
BspQI	GCTCTTC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	3 cut(s)	69, 193, 470
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	182, 513
Bst4CI	ACNGT	3 cut(s)	287, 533, 649
Bst6I	CTCTTC	4 cut(s)	74, 248, 310, 384
BstAUI	TGTACA	1 cut(s)	759
BstC8I	GCNNGC	3 cut(s)	153, 300, 507
BstF5I	GGATG	3 cut(s)	166, 442, 672
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	3 cut(s)	86, 293, 514
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 65
BstNI	CCWGG	2 cut(s)	182, 513
BstNSI	RCATGY	1 cut(s)	822
BstSCI	CCNGG	3 cut(s)	180, 511, 565
BstSFI	CTRYAG	3 cut(s)	98, 142, 532
BstV1I	GCAGC	2 cut(s)	15, 18
BstV2I	GAAGAC	2 cut(s)	288, 456
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	68, 140, 197
BtsCI	GGATG	3 cut(s)	166, 442, 672
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	3 cut(s)	95, 313, 645
BveI	ACCTGC	2 cut(s)	91, 466
Cac8I	GCNNGC	3 cut(s)	153, 300, 507
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	138, 563
CpoI	CGGWCCG	1 cut(s)	563
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	163, 760
CspI	CGGWCCG	1 cut(s)	563
CviAII	CATG	3 cut(s)	331, 813, 819
CviJI	RGCY	8 cut(s)	68, 84, 116, 140, 151, 197, 505, 687
CviKI_1	RGCY	8 cut(s)	68, 84, 116, 140, 151, 197, 505, 687
CviQI	GTAC	2 cut(s)	163, 760
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
DraI	TTTAAA	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	4 cut(s)	74, 248, 310, 384
EarI	CTCTTC	4 cut(s)	74, 248, 310, 384
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	180, 511
EcoT22I	ATGCAT	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	3 cut(s)	334, 816, 822
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 733, 765
FatI	CATG	3 cut(s)	330, 812, 818
Fnu4HI	GCNGC	3 cut(s)	29, 32, 303
FokI	GGATG	3 cut(s)	153, 449, 679
Fsp4HI	GCNGC	3 cut(s)	29, 32, 303
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	29, 32, 303
HaeIII	GGCC	3 cut(s)	68, 140, 197
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	334, 816, 822
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	1 cut(s)	207
HpaI	GTTAAC	1 cut(s)	738
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	377, 738
Hpy188I	TCNGA	2 cut(s)	121, 244
Hpy188III	TCNNGA	2 cut(s)	133, 170
Hpy8I	GTNNAC	2 cut(s)	377, 738
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	3 cut(s)	287, 533, 649
HpyCH4IV	ACGT	2 cut(s)	495, 523
HpyCH4V	TGCA	6 cut(s)	74, 100, 440, 475, 670, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 65
HpySE526I	ACGT	2 cut(s)	495, 523
Hsp92II	CATG	3 cut(s)	334, 816, 822
HspAI	GCGC	1 cut(s)	45
KspAI	GTTAAC	1 cut(s)	738
Kzo9I	GATC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	113, 258
Lsp1109I	GCAGC	2 cut(s)	15, 18
LweI	GCATC	3 cut(s)	427, 449, 657
MaeII	ACGT	2 cut(s)	495, 523
MaeIII	GTNAC	2 cut(s)	527, 608
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MluCI	AATT	2 cut(s)	431, 613
MmeI	TCCRAC	2 cut(s)	144, 601
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	3 cut(s)	219, 618, 737
MslI	CAYNNNNRTG	3 cut(s)	335, 817, 823
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	3 cut(s)	182, 513, 567
MvaI	CCWGG	2 cut(s)	182, 513
MwoI	GCNNNNNNNGC	2 cut(s)	51, 65
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	3 cut(s)	334, 816, 822
NlaIV	GGNNCC	2 cut(s)	105, 115
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	822
PaqCI	CACCTGC	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	716
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	30, 33, 304
PsiI	TTATAA	1 cut(s)	500
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	180, 511
PspGI	CCWGG	2 cut(s)	180, 511
PspN4I	GGNNCC	2 cut(s)	105, 115
PspPI	GGNCC	2 cut(s)	138, 563
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	2 cut(s)	164, 761
RsaNI	GTAC	2 cut(s)	163, 760
RseI	CAYNNNNRTG	3 cut(s)	335, 817, 823
Rsr2I	CGGWCCG	1 cut(s)	563
RsrII	CGGWCCG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	219, 618, 737
SatI	GCNGC	3 cut(s)	29, 32, 303
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	138, 563
ScrFI	CCNGG	3 cut(s)	182, 513, 567
SfaNI	GCATC	3 cut(s)	427, 449, 657
SfcI	CTRYAG	3 cut(s)	98, 142, 532
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	3 cut(s)	335, 817, 823
Sse9I	AATT	2 cut(s)	431, 613
SsiI	CCGC	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	180, 511, 565
TaaI	ACNGT	3 cut(s)	287, 533, 649
TaiI	ACGT	2 cut(s)	498, 526
TaqI	TCGA	1 cut(s)	429
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	2 cut(s)	431, 613
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	3 cut(s)	219, 618, 737
Tru9I	TTAA	3 cut(s)	219, 618, 737
TscAI	CASTG	3 cut(s)	102, 313, 652
TseI	GCWGC	2 cut(s)	28, 31
TspDTI	ATGAA	7 cut(s)	353, 459, 631, 639, 680, 687, 801
TspGWI	ACGGA	2 cut(s)	31, 602
TspRI	CASTG	3 cut(s)	102, 313, 652
Van91I	CCANNNNNTGG	1 cut(s)	716
VpaK11BI	GGWCC	1 cut(s)	563
XceI	RCATGY	1 cut(s)	822
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.