Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

29166320 .. 29170344

Gene Structure 4025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39520.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCCAAGTTGCTGCTGTTGGTGCTGTGCGCGCTCTGCACCGCCATTGCAGCGGGCAAGAGCTATTATGAGATACTCCAAGTCCCAAAAGGAGCCTCGGACGAGCAGATCAAGAGGGCTTACCGGAAGCTCGCCTTGAAGTACCATCCCGATAAGAACCAGGGCAATGAAGAGGCCAATCAGCGATTCGCTGACATCAATAATGCCTACGAGGTGCTTTCGGATAGCGAGAAGAGGAGCATTTACGACAGGTATGGAGAAGACGGTCTCAAACAGCATGCCGCCAGTGGAGGAAGAGGCGGTGGTGGAATGGGAATGAACATCAATGACATTTTCGCCGATTTCTTTGGTGGTGGACGCTCTGCTGAAGAGGAAGATAAAATAATCAAGGGCGATGATGTAGTCATCGAATTGGATGCATCATTGGAAGACCTCTATATGGGAGGTTCATTGAAGGTTTGGAGAGAGAAGAATGTTATAAAGCCAGCACCAGGAAAGAGACGTTGTAACTGTAGAAATGAGGTATATCACAGGCAAATTGGTCCAGGAATGTTCCAGCAAATGACAGAACAGGTCTGCGAACAATGTAACAATGTTAAATATGAAAGGGAGGGATATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAATTTCGAATCCGCACAGCACCTCATGACCGATTCAGAAGGGAAGGCAATGACTTGCATACAACCATCACCATCACACTGGTTCAAGCTCTGGTTGGCTTTGAGAAGACCATTGAACACCTGGATGATCATCTGGTTGACATAAGCTCTCAGAAAATTACAAAGCCCAAGGAAGTCAGAAAATTCAAAGGGGAAGGGATGCCTTTGCATTTTCACTCAAAAAAAGGAGACTTGTACGTCAAATTTGAGGTTCTATTCCCCACTTCACTTACAGAAGAACAGAAGACAAAGATCAAAGCTGTTCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

343

Amino Acids

38.62

Weight (kDa)

5.93

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	21 - 83	5.7e-29	DnaJ domain
DnaJ_C	PF01556	135 - 283	1.4e-23	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AasI	GACNNNNNNGTC	1 cut(s)	953
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	42, 53, 282, 300, 730
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	719, 899, 959
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	143, 953
AfiI	CCNNNNNNNGG	2 cut(s)	439, 491
AgsI	TTSAA	5 cut(s)	139, 454, 803, 833, 904
AjnI	CCWGG	5 cut(s)	159, 490, 544, 706, 837
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	63, 130, 806, 864, 1016
AluI	AGCT	5 cut(s)	63, 130, 806, 864, 1016
Alw26I	GTCTC	3 cut(s)	272, 493, 939
AoxI	GGCC	2 cut(s)	3, 174
ApeKI	GCWGC	2 cut(s)	13, 50
ApoI	RAATTY	3 cut(s)	719, 899, 959
AspLEI	GCGC	2 cut(s)	32, 34
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	695, 778
AsuII	TTCGAA	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	4 cut(s)	267, 435, 830, 1007
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	6 cut(s)	153, 647, 674, 692, 791, 797
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	5 cut(s)	161, 492, 546, 708, 839
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	3 cut(s)	272, 493, 939
BfmI	CTRYAG	1 cut(s)	511
BisI	GCNGC	3 cut(s)	14, 51, 282
BlsI	GCNGC	3 cut(s)	15, 52, 283
Bme1390I	CCNGG	5 cut(s)	161, 492, 546, 708, 839
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	5 cut(s)	161, 492, 546, 708, 839
BmsI	GCATC	4 cut(s)	406, 428, 636, 906
BpiI	GAAGAC	4 cut(s)	267, 435, 830, 1007
BpmI	CTGGAG	1 cut(s)	729
Bpu14I	TTCGAA	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	846
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	96, 160, 885
BsaWI	WCCGGW	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 491
Bse1I	ACTGG	2 cut(s)	285, 801
Bse3DI	GCAATG	3 cut(s)	45, 172, 772
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	5 cut(s)	161, 492, 546, 708, 839
BseDI	CCNNGG	3 cut(s)	96, 160, 885
BseGI	GGATG	6 cut(s)	145, 421, 651, 685, 847, 921
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	2 cut(s)	439, 491
BseMI	GCAATG	3 cut(s)	45, 172, 772
BseMII	CTCAG	1 cut(s)	881
BseNI	ACTGG	2 cut(s)	285, 801
BsePI	GCGCGC	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	5, 176
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	439, 491
BsmAI	GTCTC	3 cut(s)	272, 493, 939
BsmBI	CGTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	5, 176
Bso31I	GGTCTC	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	724
Bsp143I	GATC	3 cut(s)	108, 844, 1008
BspACI	CCGC	5 cut(s)	42, 53, 282, 300, 730
BspANI	GGCC	2 cut(s)	5, 176
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	3 cut(s)	45, 172, 772
BsrI	ACTGG	2 cut(s)	285, 801
BssECI	CCNNGG	3 cut(s)	96, 160, 885
BssHII	GCGCGC	1 cut(s)	30
BssMI	GATC	3 cut(s)	108, 844, 1008
BssT1I	CCWWGG	1 cut(s)	885
Bst2UI	CCWGG	5 cut(s)	161, 492, 546, 708, 839
Bst4CI	ACNGT	3 cut(s)	266, 512, 628
Bst6I	CTCTTC	4 cut(s)	165, 227, 289, 363
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	5 cut(s)	32, 55, 132, 279, 486
BstDEI	CTNAG	1 cut(s)	867
BstF5I	GGATG	6 cut(s)	145, 421, 651, 685, 847, 921
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	32, 34
BstKTI	GATC	3 cut(s)	111, 847, 1011
BstMAI	GTCTC	3 cut(s)	272, 493, 939
BstMBI	GATC	3 cut(s)	108, 844, 1008
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 31, 36, 50
BstNI	CCWGG	5 cut(s)	161, 492, 546, 708, 839
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	5 cut(s)	159, 490, 544, 706, 837
BstSFI	CTRYAG	1 cut(s)	511
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	4 cut(s)	267, 435, 830, 1007
BstXI	CCANNNNNNTGG	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	5, 176
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	6 cut(s)	145, 421, 651, 685, 847, 921
BtsIMutI	CAGTG	3 cut(s)	292, 624, 794
Cac8I	GCNNGC	5 cut(s)	32, 55, 132, 279, 486
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	2 cut(s)	32, 34
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	142, 952
CviAII	CATG	2 cut(s)	278, 743
CviQI	GTAC	2 cut(s)	142, 952
DdeI	CTNAG	1 cut(s)	867
DpnI	GATC	3 cut(s)	110, 846, 1010
DpnII	GATC	3 cut(s)	108, 844, 1008
DraI	TTTAAA	1 cut(s)	717
DrdI	GACNNNNNNGTC	1 cut(s)	953
DseDI	GACNNNNNNGTC	1 cut(s)	953
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	165, 227, 289, 363
EarI	CTCTTC	4 cut(s)	165, 227, 289, 363
Eco130I	CCWWGG	1 cut(s)	885
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	5 cut(s)	159, 490, 544, 706, 837
EcoT14I	CCWWGG	1 cut(s)	885
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	885
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	2 cut(s)	281, 746
FalI	AAGNNNNNCTT	3 cut(s)	119, 151, 1005
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	277, 742
FauI	CCCGC	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	844
Fnu4HI	GCNGC	3 cut(s)	14, 51, 282
FokI	GGATG	6 cut(s)	132, 428, 658, 692, 854, 928
Fsp4HI	GCNGC	3 cut(s)	14, 51, 282
GlaI	GCGC	2 cut(s)	31, 33
GluI	GCNGC	3 cut(s)	14, 51, 282
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	5, 176
HapII	CCGG	1 cut(s)	124
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	2 cut(s)	32, 34
Hin1II	CATG	2 cut(s)	281, 746
Hin6I	GCGC	2 cut(s)	30, 32
HinP1I	GCGC	2 cut(s)	30, 32
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	3 cut(s)	186, 726, 750
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	695, 778
Hpy166II	GTNNAC	3 cut(s)	356, 686, 856
Hpy188I	TCNGA	5 cut(s)	100, 223, 755, 870, 896
Hpy188III	TCNNGA	3 cut(s)	112, 149, 743
Hpy8I	GTNNAC	3 cut(s)	356, 686, 856
HpyAV	CCTTC	4 cut(s)	448, 750, 755, 905
HpyCH4III	ACNGT	3 cut(s)	266, 512, 628
HpyCH4IV	ACGT	2 cut(s)	502, 954
HpyCH4V	TGCA	6 cut(s)	39, 50, 419, 649, 775, 925
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 31, 36, 50
HpyF3I	CTNAG	1 cut(s)	867
HpySE526I	ACGT	2 cut(s)	502, 954
Hsp92II	CATG	2 cut(s)	281, 746
HspAI	GCGC	2 cut(s)	30, 32
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	108, 844, 1008
LmnI	GCTCC	2 cut(s)	92, 237
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	4 cut(s)	406, 428, 636, 906
MaeII	ACGT	2 cut(s)	502, 954
MaeIII	GTNAC	2 cut(s)	506, 587
MalI	GATC	3 cut(s)	110, 846, 1010
MboI	GATC	3 cut(s)	108, 844, 1008
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	410, 537, 693, 719, 873, 899, 959
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	421
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	597, 716
MslI	CAYNNNNRTG	1 cut(s)	840
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	5 cut(s)	161, 492, 546, 708, 839
MvaI	CCWGG	5 cut(s)	161, 492, 546, 708, 839
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	22, 31, 36, 50
NdeII	GATC	3 cut(s)	108, 844, 1008
NlaIII	CATG	2 cut(s)	281, 746
NlaIV	GGNNCC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	724
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	742
PauI	GCGCGC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	186, 726, 750
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	15, 52, 283
PsiI	TTATAA	1 cut(s)	479
Psp6I	CCWGG	5 cut(s)	159, 490, 544, 706, 837
PspGI	CCWGG	5 cut(s)	159, 490, 544, 706, 837
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	542
PteI	GCGCGC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	143, 953
RsaNI	GTAC	2 cut(s)	142, 952
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	2 cut(s)	597, 716
SatI	GCNGC	3 cut(s)	14, 51, 282
Sau3AI	GATC	3 cut(s)	108, 844, 1008
Sau96I	GGNCC	1 cut(s)	542
ScrFI	CCNGG	5 cut(s)	161, 492, 546, 708, 839
SfaNI	GCATC	4 cut(s)	406, 428, 636, 906
SfcI	CTRYAG	1 cut(s)	511
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	840
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	7 cut(s)	410, 537, 693, 719, 873, 899, 959
SsiI	CCGC	5 cut(s)	42, 53, 282, 300, 730
StyD4I	CCNGG	5 cut(s)	159, 490, 544, 706, 837
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	3 cut(s)	266, 512, 628
TaiI	ACGT	2 cut(s)	505, 957
TaqI	TCGA	2 cut(s)	408, 724
TaqII	GACCGA	1 cut(s)	762
TasI	AATT	7 cut(s)	410, 537, 693, 719, 873, 899, 959
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	3 cut(s)	186, 726, 750
Tru1I	TTAA	2 cut(s)	597, 716
Tru9I	TTAA	2 cut(s)	597, 716
TscAI	CASTG	3 cut(s)	292, 631, 801
TseI	GCWGC	2 cut(s)	13, 50
TspDTI	ATGAA	5 cut(s)	183, 332, 438, 610, 618
TspRI	CASTG	3 cut(s)	292, 631, 801
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	3 cut(s)	719, 899, 959
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.