Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

38492478 .. 38494481

Gene Structure 2004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0347700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGGACAGATTCAGTGATCTCCCAGATGAAATTTCTCATCATATTATTTCGTTCCTCTCTGACTCTTTAAGGAACCTCATTCAAGTGGGAGCTGTGTCCAAAAGATGTAGGAAACTTTATCTGTCAGTTCCATCAATAATTATTGATGCAAGTAGCGTTGCAGATTGCACCAAGTTGCGAGTAAGATTGTTGAACTCTTGGGATAGGTACTTGTTTCACCGTGGTAATAATAAGATTGAGCGCCTTAGTATTTACTGGGTTTTCAGAACCTCTTGGGAGGCAAAGATAAGTGATGAGTATTTCCGAGTCACCACATGGATCCAAAATGCAGTGAGGTGTAATGTTGAAGTACTTCACCTTGATCTGAATCAATACGACCTCAGGATGACAGTTGTGTTGCCGTCTTGCATCTTCCTTTGTCGTTCTTTGAGGACTCTATCTGTGAATTTGTATATGGGCAAGATTCAGTCACCCAACTTGTCTTTTTCCTGTAATCTCCACTACTTGAAGTTGAAGTATGTACGTCTTAAAGATGACGGTATTTTCAAATGGATCTCATATTCCTGCAAATGCATAAAGGAATTACATCTTGAAAAAGTTATTGGGATAAAAGATATCAAGATTGAGAGCTCGTCTTTGGAATCGTTTAGTCTTTTGCTTCCTTTTCAGAATTATGAGCTCTGGGATCTTAGCATTTCAGCTGAAAAACTTGAAGATATATGTATACACTGGCAATTTGATTCGAGACGTGATTCAAAGTTTCATCTTTTACCTCGCATCAGATCGTTTAATCTCTTTGCTCCAAAGCTTAAAAATTTCAAATGGAGTGGGAATTTTCTGAACCATCATCATCTTGGGAACTTGATGTGTTTAGAAGAAGCTGACATATTTCTGATGCCCGATTTAGATGATTCTAGCAACCTATTTGAGGTTCTTTGCAGCATATGTATGGTTAAAGTTCTAACCCTAAATGAAGAAACTACAAAGGCTTTATGCAGGGGAGGTTCCATGCCGGTACCATTAGATAGTATTCGTTACTTGAGTTTGCATGTTACAAGTCTGAATGCTGACTTGGTCGCGGCAATGGTGTCTATTTTTAGAGGAATTACTTCTTTGAATACTTTGTGCATAATGTCTGACCTATCCAAGTCATCTGTATCTGGAACTGAAGATGACAGTGATATTGAGGAAGTGGTTGAGGATAATGATACGGAGGAAGAGAATAATGAAAACGAGGAAGAGGACAATGACAATTATACCGAGGAAGAAGATAATGAAACTGAGGAAAATGCAACTGAGAAAGAGAATAATGAATCCAGGTTCAATGTGGAATACTGGAAATCCCAAAACCTAACCTTTATTTATCAGCTCAAGGAAGTGAGAATAGACCTTCTAGATGGTAATAATGAATTGGAGTTCGCAAGGTATATTCTGGAGAATGCTCCGAGTTTGGAGAAAATGGTCATAATTCAATCACCCCAGCATTCGGATGTTGTGGAGATGGTAACCAAAAGCAAGATGATTTCCAATGCGACAGTTGTTTTACAAGAAAGGCAGAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

521

Amino Acids

60.38

Weight (kDa)

5.04

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	104 - 248	2.7e-07	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1015
AccB1I	GGYRCC	1 cut(s)	1015
AccI	GTMKAC	1 cut(s)	724
AccII	CGCG	1 cut(s)	1079
AciI	CCGC	1 cut(s)	1079
AclWI	GGATC	4 cut(s)	313, 326, 560, 693
AcsI	RAATTY	4 cut(s)	30, 445, 814, 832
AcuI	CTGAAG	1 cut(s)	1188
AfaI	GTAC	4 cut(s)	209, 351, 522, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	928, 1486
AjiI	CACGTC	1 cut(s)	749
AjnI	CCWGG	1 cut(s)	1316
AjuI	GAANNNNNNNTTGG	4 cut(s)	585, 617, 1055, 1087
AluBI	AGCT	7 cut(s)	92, 630, 679, 701, 808, 881, 1369
AluI	AGCT	7 cut(s)	92, 630, 679, 701, 808, 881, 1369
Alw21I	GWGCWC	2 cut(s)	632, 681
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	4 cut(s)	313, 326, 560, 693
ApeKI	GCWGC	1 cut(s)	939
ApoI	RAATTY	4 cut(s)	30, 445, 814, 832
Asp700I	GAANNNNTTC	2 cut(s)	351, 1108
Asp718I	GGTACC	1 cut(s)	1015
AspLEI	GCGC	1 cut(s)	243
AsuHPI	GGTGA	5 cut(s)	209, 301, 347, 462, 1467
AxyI	CCTNAGG	1 cut(s)	380
BamHI	GGATCC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	1015
BanII	GRGCYC	2 cut(s)	632, 681
Bbv12I	GWGCWC	2 cut(s)	632, 681
BbvI	GCAGC	1 cut(s)	951
BccI	CCATC	4 cut(s)	139, 852, 1391, 1495
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	1318
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	2 cut(s)	915, 1394
BfoI	RGCGCY	1 cut(s)	244
BisI	GCNGC	2 cut(s)	940, 1080
BlsI	GCNGC	2 cut(s)	941, 1081
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	1 cut(s)	1318
BmgBI	CACGTC	1 cut(s)	749
BmiI	GGNNCC	4 cut(s)	74, 320, 1006, 1017
BmrFI	CCNGG	1 cut(s)	1318
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	4 cut(s)	136, 417, 786, 885
BmuI	ACTGGG	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	1454
BpuEI	CTTGAG	2 cut(s)	1060, 1355
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	220, 1260
Bsc4I	CCNNNNNNNGG	2 cut(s)	928, 1486
Bse118I	RCCGGY	1 cut(s)	1012
Bse1I	ACTGG	3 cut(s)	260, 734, 1340
Bse21I	CCTNAGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	1089
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	1318
BseDI	CCNNGG	2 cut(s)	220, 1260
BseGI	GGATG	2 cut(s)	390, 1495
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	928, 1486
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	3 cut(s)	394, 1272, 1287
BseNI	ACTGG	3 cut(s)	260, 734, 1340
BseXI	GCAGC	1 cut(s)	951
BseYI	CCCAGC	1 cut(s)	1479
Bsh1236I	CGCG	1 cut(s)	1079
BshNI	GGYRCC	1 cut(s)	1015
BsiHKAI	GWGCWC	2 cut(s)	632, 681
BsiSI	CCGG	1 cut(s)	1013
BslI	CCNNNNNNNGG	2 cut(s)	928, 1486
BsmAI	GTCTC	1 cut(s)	739
BsmBI	CGTCTC	1 cut(s)	739
BsmI	GAATGC	3 cut(s)	1069, 1444, 1483
Bsp1286I	GDGCHC	2 cut(s)	632, 681
Bsp143I	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
BspACI	CCGC	1 cut(s)	1079
BspCNI	CTCAG	3 cut(s)	393, 1273, 1288
BspFNI	CGCG	1 cut(s)	1079
BspLI	GGNNCC	4 cut(s)	74, 320, 1006, 1017
BspPI	GGATC	4 cut(s)	313, 326, 560, 693
BspT107I	GGYRCC	1 cut(s)	1015
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	1 cut(s)	1012
BsrI	ACTGG	3 cut(s)	260, 734, 1340
BssAI	RCCGGY	1 cut(s)	1012
BssECI	CCNNGG	2 cut(s)	220, 1260
BssMI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
BssNAI	GTATAC	1 cut(s)	725
Bst1107I	GTATAC	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	1318
Bst4CI	ACNGT	5 cut(s)	221, 391, 539, 1178, 1537
Bst6I	CTCTTC	2 cut(s)	1212, 1233
BstDEI	CTNAG	5 cut(s)	245, 380, 689, 1281, 1296
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	1504
BstENI	CCTNNNNNAGG	1 cut(s)	926
BstF5I	GGATG	2 cut(s)	390, 1495
BstFNI	CGCG	1 cut(s)	1079
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	6 cut(s)	19, 321, 364, 555, 688, 785
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
BstNI	CCWGG	1 cut(s)	1318
BstNSI	RCATGY	1 cut(s)	1052
BstPI	GGTNACC	1 cut(s)	1504
BstSCI	CCNGG	1 cut(s)	1316
BstUI	CGCG	1 cut(s)	1079
BstV1I	GCAGC	1 cut(s)	951
BstX2I	RGATCY	3 cut(s)	318, 552, 685
BstYI	RGATCY	3 cut(s)	318, 552, 685
BstZ17I	GTATAC	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	749
BtsCI	GGATG	2 cut(s)	390, 1495
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	4 cut(s)	19, 336, 727, 1183
CfoI	GCGC	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	1012
Csp6I	GTAC	4 cut(s)	208, 350, 521, 1016
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	3 cut(s)	315, 1009, 1049
CviJI	RGCY	8 cut(s)	92, 630, 679, 701, 808, 881, 989, 1369
CviKI_1	RGCY	8 cut(s)	92, 630, 679, 701, 808, 881, 989, 1369
CviQI	GTAC	4 cut(s)	208, 350, 521, 1016
DdeI	CTNAG	5 cut(s)	245, 380, 689, 1281, 1296
DpnI	GATC	6 cut(s)	18, 320, 363, 554, 687, 784
DpnII	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
Eam1104I	CTCTTC	2 cut(s)	1212, 1233
EarI	CTCTTC	2 cut(s)	1212, 1233
Ecl136II	GAGCTC	2 cut(s)	630, 679
Eco24I	GRGCYC	2 cut(s)	632, 681
Eco32I	GATATC	1 cut(s)	616
Eco53kI	GAGCTC	2 cut(s)	630, 679
Eco57I	CTGAAG	1 cut(s)	1188
Eco81I	CCTNAGG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	1504
EcoICRI	GAGCTC	2 cut(s)	630, 679
EcoNI	CCTNNNNNAGG	1 cut(s)	926
EcoO65I	GGTNACC	1 cut(s)	1504
EcoRII	CCWGG	1 cut(s)	1316
EcoRV	GATATC	1 cut(s)	616
EcoT22I	ATGCAT	1 cut(s)	575
EcoT38I	GRGCYC	2 cut(s)	632, 681
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	3 cut(s)	318, 1012, 1052
FatI	CATG	3 cut(s)	314, 1008, 1048
FauNDI	CATATG	1 cut(s)	944
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	940, 1080
FokI	GGATG	2 cut(s)	397, 1502
FriOI	GRGCYC	2 cut(s)	632, 681
Fsp4HI	GCNGC	2 cut(s)	940, 1080
FspBI	CTAG	2 cut(s)	915, 1394
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	940, 1080
GsaI	CCCAGC	1 cut(s)	1483
GsuI	CTGGAG	1 cut(s)	1454
HaeII	RGCGCY	1 cut(s)	244
HapII	CCGG	1 cut(s)	1013
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	318, 1012, 1052
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	806
HpaII	CCGG	1 cut(s)	1013
HphI	GGTGA	5 cut(s)	209, 301, 347, 462, 1467
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188III	TCNNGA	7 cut(s)	382, 590, 619, 744, 1161, 1394, 1433
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	1 cut(s)	1400
HpyCH4III	ACNGT	5 cut(s)	221, 391, 539, 1178, 1537
HpyCH4IV	ACGT	2 cut(s)	523, 748
HpyF3I	CTNAG	5 cut(s)	245, 380, 689, 1281, 1296
HpySE526I	ACGT	2 cut(s)	523, 748
Hsp92II	CATG	3 cut(s)	318, 1012, 1052
HspAI	GCGC	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	1019
Kzo9I	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
LmnI	GCTCC	3 cut(s)	89, 805, 1447
Lsp1109I	GCAGC	1 cut(s)	951
LweI	GCATC	4 cut(s)	136, 417, 786, 885
MaeI	CTAG	2 cut(s)	915, 1394
MaeII	ACGT	2 cut(s)	523, 748
MaeIII	GTNAC	5 cut(s)	307, 468, 1034, 1051, 1504
MalI	GATC	6 cut(s)	18, 320, 363, 554, 687, 784
MboI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
MboII	GAAGA	9 cut(s)	403, 725, 887, 986, 1181, 1229, 1250, 1277, 1280
MflI	RGATCY	3 cut(s)	318, 552, 685
MhlI	GDGCHC	2 cut(s)	632, 681
MlyI	GAGTC	3 cut(s)	56, 315, 427
Mph1103I	ATGCAT	1 cut(s)	575
MroXI	GAANNNNTTC	2 cut(s)	351, 1108
MseI	TTAA	5 cut(s)	68, 528, 789, 810, 954
MslI	CAYNNNNRTG	3 cut(s)	83, 947, 1488
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	1013
MspR9I	CCNGG	1 cut(s)	1318
Mva1269I	GAATGC	3 cut(s)	1069, 1444, 1483
MvaI	CCWGG	1 cut(s)	1318
MvnI	CGCG	1 cut(s)	1079
NdeI	CATATG	1 cut(s)	944
NdeII	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
NlaIII	CATG	3 cut(s)	318, 1012, 1052
NlaIV	GGNNCC	4 cut(s)	74, 320, 1006, 1017
NmuCI	GTSAC	2 cut(s)	307, 468
NsiI	ATGCAT	1 cut(s)	575
NspI	RCATGY	1 cut(s)	1052
PctI	GAATGC	3 cut(s)	1069, 1444, 1483
PdmI	GAANNNNTTC	2 cut(s)	351, 1108
PfeI	GAWTC	8 cut(s)	9, 367, 463, 641, 740, 752, 911, 1313
PflFI	GACNNNGTC	1 cut(s)	1073
PkrI	GCNGC	2 cut(s)	941, 1081
PleI	GAGTC	3 cut(s)	56, 314, 427
PpsI	GAGTC	3 cut(s)	56, 314, 427
Psp124BI	GAGCTC	2 cut(s)	632, 681
Psp6I	CCWGG	1 cut(s)	1316
PspEI	GGTNACC	1 cut(s)	1504
PspFI	CCCAGC	1 cut(s)	1479
PspGI	CCWGG	1 cut(s)	1316
PspN4I	GGNNCC	4 cut(s)	74, 320, 1006, 1017
PsuI	RGATCY	3 cut(s)	318, 552, 685
PsyI	GACNNNGTC	1 cut(s)	1073
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	4 cut(s)	209, 351, 522, 1017
RsaNI	GTAC	4 cut(s)	208, 350, 521, 1016
RseI	CAYNNNNRTG	3 cut(s)	83, 947, 1488
SacI	GAGCTC	2 cut(s)	632, 681
SaqAI	TTAA	5 cut(s)	68, 528, 789, 810, 954
SatI	GCNGC	2 cut(s)	940, 1080
Sau3AI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	3 cut(s)	56, 315, 427
ScrFI	CCNGG	1 cut(s)	1318
SduI	GDGCHC	2 cut(s)	632, 681
SfaNI	GCATC	4 cut(s)	136, 417, 786, 885
SmiMI	CAYNNNNRTG	3 cut(s)	83, 947, 1488
SmlI	CTYRAG	2 cut(s)	1039, 1370
SmoI	CTYRAG	2 cut(s)	1039, 1370
SsiI	CCGC	1 cut(s)	1079
SspMI	CTAG	2 cut(s)	915, 1394
SstI	GAGCTC	2 cut(s)	632, 681
StyD4I	CCNGG	1 cut(s)	1316
TaaI	ACNGT	5 cut(s)	221, 391, 539, 1178, 1537
TaiI	ACGT	2 cut(s)	526, 751
TaqI	TCGA	1 cut(s)	743
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	1082
TfiI	GAWTC	8 cut(s)	9, 367, 463, 641, 740, 752, 911, 1313
Tru1I	TTAA	5 cut(s)	68, 528, 789, 810, 954
Tru9I	TTAA	5 cut(s)	68, 528, 789, 810, 954
TscAI	CASTG	4 cut(s)	19, 336, 734, 1183
TseFI	GTSAC	2 cut(s)	307, 468
TseI	GCWGC	1 cut(s)	939
Tsp45I	GTSAC	2 cut(s)	307, 468
TspDTI	ATGAA	7 cut(s)	42, 752, 987, 1242, 1290, 1326, 1422
TspGWI	ACGGA	1 cut(s)	1226
TspRI	CASTG	4 cut(s)	19, 336, 734, 1183
Tth111I	GACNNNGTC	1 cut(s)	1073
XagI	CCTNNNNNAGG	1 cut(s)	926
XapI	RAATTY	4 cut(s)	30, 445, 814, 832
XbaI	TCTAGA	1 cut(s)	1393
XceI	RCATGY	1 cut(s)	1052
XcmI	CCANNNNNNNNNTGG	2 cut(s)	851, 1324
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	2 cut(s)	351, 1108
XspI	CTAG	2 cut(s)	915, 1394
ZrmI	AGTACT	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.