Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

29832560 .. 29834966

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAATGAACATCAACGACATTTTTTCCGAGTTTTTTGGTGGTGGACGCCCTACGGAAGAAGAAGATAGAATCATCAAGGGAGATGATGTAATCGTTGAATTGGATGCAACATTGGAAGACCTCTATATGGGAGGCTCGTTAAAGGTTTGGAGGGAGAAGAACATTCTGAAGCCAGCACCAGGCAAGAGACGATGTAACTGCAGAAATGAGGTATATCACAGGCAAATTGGTCCAGGGATGTTCCAACAGATGACAGAACAGGTCTGTGACCAATGTTCCAATGTCAAATATGAAAGGGAGGGATATTTCGTTACTGTTGATATTGAGAAAGGGATGCAAGATGGGCAAGAGGTGGTCTTCTATGAAGATGGCGAGCCTATAATTGATGGAGAACCTGGAGATCTAAAATTCCGCATCCGCACAGCAGCTCATGACCGGTTCAAAAGGGAAGGCAACAACTTACACACAACTATCACTATCACACTGGTTCAAGCTCTTGTTGGCTTTGAGAAGACTATTAAGCACCTTGATGATCATTTGGTGGACATTAGCTCAAAGGGAATTACAAGGCCCAAGGAAGTGAGGAAATTCAAAGGGGAACGGATGCCTCTACATTTCAGCAACAAGAAAGGAGATTTGTACGTAACATTTGAGGTTTTATTCCCGAACTCGGTAACAGATGATCAAAAGACAAAGATCAAGGCGGTTCTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

240

Amino Acids

27.33

Weight (kDa)

5.77

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	415, 421, 707
AcsI	RAATTY	2 cut(s)	410, 590
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	3 cut(s)	130, 182, 673
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	101, 445, 494, 595
AjnI	CCWGG	3 cut(s)	181, 235, 397
AluBI	AGCT	3 cut(s)	431, 497, 555
AluI	AGCT	3 cut(s)	431, 497, 555
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	410, 590
AsiGI	ACCGGT	1 cut(s)	438
AspS9I	GGNCC	2 cut(s)	233, 573
AvaII	GGWCC	1 cut(s)	233
BbsI	GAAGAC	3 cut(s)	126, 352, 521
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	3 cut(s)	338, 365, 383
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	3 cut(s)	183, 237, 399
BclI	TGATCA	2 cut(s)	535, 685
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	202
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	183, 237, 399
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 573
BmrFI	CCNGG	3 cut(s)	183, 237, 399
BmsI	GCATC	4 cut(s)	97, 327, 426, 597
BpiI	GAAGAC	3 cut(s)	126, 352, 521
BpmI	CTGGAG	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	646
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	236, 576
BsaWI	WCCGGW	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 182, 673
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	183, 237, 399
BseDI	CCNNGG	2 cut(s)	236, 576
BseGI	GGATG	5 cut(s)	112, 246, 342, 417, 612
BseLI	CCNNNNNNNGG	3 cut(s)	130, 182, 673
BseNI	ACTGG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	440
BshFI	GGCC	1 cut(s)	574
BshTI	ACCGGT	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	130, 182, 673
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	403, 535, 685, 699
BspACI	CCGC	3 cut(s)	415, 421, 707
BspANI	GGCC	1 cut(s)	574
BspHI	TCATGA	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	236, 576
BssMI	GATC	4 cut(s)	403, 535, 685, 699
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	3 cut(s)	183, 237, 399
Bst4CI	ACNGT	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	177, 377
BstF5I	GGATG	5 cut(s)	112, 246, 342, 417, 612
BstKTI	GATC	4 cut(s)	406, 538, 688, 702
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	4 cut(s)	403, 535, 685, 699
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	3 cut(s)	183, 237, 399
BstSCI	CCNGG	3 cut(s)	181, 235, 397
BstSFI	CTRYAG	1 cut(s)	202
BstSNI	TACGTA	1 cut(s)	646
BstV1I	GCAGC	1 cut(s)	440
BstV2I	GAAGAC	3 cut(s)	126, 352, 521
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	574
BtsCI	GGATG	5 cut(s)	112, 246, 342, 417, 612
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	177, 377
CciI	TCATGA	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	233, 573
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	643
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	1 cut(s)	434
CviJI	RGCY	8 cut(s)	138, 175, 379, 431, 497, 507, 555, 574
CviKI_1	RGCY	8 cut(s)	138, 175, 379, 431, 497, 507, 555, 574
CviQI	GTAC	1 cut(s)	643
DpnI	GATC	4 cut(s)	405, 537, 687, 701
DpnII	GATC	4 cut(s)	403, 535, 685, 699
Eco105I	TACGTA	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	3 cut(s)	181, 235, 397
EcoT14I	CCWWGG	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	1 cut(s)	437
FaiI	YATR	7 cut(s)	129, 131, 217, 294, 366, 383, 435
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	2 cut(s)	535, 685
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	5 cut(s)	119, 253, 349, 404, 619
Fsp4HI	GCNGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	1 cut(s)	439
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	437
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	439
Hpy166II	GTNNAC	2 cut(s)	47, 547
Hpy188I	TCNGA	2 cut(s)	31, 171
Hpy188III	TCNNGA	2 cut(s)	434, 667
Hpy8I	GTNNAC	2 cut(s)	47, 547
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	3 cut(s)	110, 204, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	437
Ksp22I	TGATCA	2 cut(s)	535, 685
Kzo9I	GATC	4 cut(s)	403, 535, 685, 699
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	4 cut(s)	97, 327, 426, 597
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	5 cut(s)	197, 269, 313, 646, 676
MalI	GATC	4 cut(s)	405, 537, 687, 701
MboI	GATC	4 cut(s)	403, 535, 685, 699
MboII	GAAGA	8 cut(s)	71, 74, 77, 131, 172, 352, 380, 526
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	6 cut(s)	101, 228, 384, 410, 564, 590
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	9 cut(s)	128, 134, 147, 205, 295, 346, 579, 621, 649
MseI	TTAA	2 cut(s)	143, 522
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	3 cut(s)	183, 237, 399
MvaI	CCWGG	3 cut(s)	183, 237, 399
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	4 cut(s)	403, 535, 685, 699
NlaIII	CATG	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	181, 235, 397
PspGI	CCWGG	3 cut(s)	181, 235, 397
PspPI	GGNCC	2 cut(s)	233, 573
PstI	CTGCAG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	143, 522
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	4 cut(s)	403, 535, 685, 699
Sau96I	GGNCC	2 cut(s)	233, 573
ScrFI	CCNGG	3 cut(s)	183, 237, 399
SfaNI	GCATC	4 cut(s)	97, 327, 426, 597
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	531
SnaBI	TACGTA	1 cut(s)	646
Sse9I	AATT	6 cut(s)	101, 228, 384, 410, 564, 590
SsiI	CCGC	3 cut(s)	415, 421, 707
StyD4I	CCNGG	3 cut(s)	181, 235, 397
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	648
TasI	AATT	6 cut(s)	101, 228, 384, 410, 564, 590
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	143, 522
Tru9I	TTAA	2 cut(s)	143, 522
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	3 cut(s)	23, 309, 381
TspGWI	ACGGA	2 cut(s)	71, 619
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	2 cut(s)	410, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.