Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

23336747 .. 23339344

Gene Structure 2598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGAATGAACATCAACGACATCTTTTCCGAGTTTTTTGGTGGCGGACGCCCTTCGGAAGAAGAAGATAGAATCGTCAAGGGAGATGATGTAGTCGTCGAATTGGACGCAACATTGGAAGACCTCTATATGGGAGGCTCATTAAAGGTTTGGAGGGAGAAGAACATTCTGAAACCAGCACCAGGCAAGAGACGTTGTAACTGCAGAAATGAGGTCTATCACAGGCAAATCGGCCCAGGGATGTTCCAACAGATGACAGAACAGGTCTGTGACCAGTGTCCCAATGTCAAATACGAAAGGGAGGGATATTTCGTCACTGTTGATATTGAGAAAGGGATGCAAGATGGGCAAGAGGTGTTCCGTATCCGCACAGCAGCTCACGACCGGTTCAAAAGGGAAGGCAACGATTTACATACAACTGTCACTATCACACTGGTTCAAGCTCTTGTTGGCTTTGAGAAGACTGTTAAGCACCTTGATGATCATCTGGTGGACATTAGCTCAAGGGGAATTACAAGGCCCAAGGAAGTGAGGAAATTCAAAGGGGAAGGGATGCCTCTACATTTCAGCAACAAGAAAGGAGATTTGTATGTAACATTTGAGGTTCTATTCCCGAACTCACTAACAGATGATCAGAAGACAAGGATCAAGGCGGTTCTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

222

Amino Acids

25.27

Weight (kDa)

6.33

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	32 - 205	3.1e-22	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	45, 367, 653
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	130, 182
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	3 cut(s)	391, 440, 541
AjnI	CCWGG	2 cut(s)	181, 235
AluBI	AGCT	3 cut(s)	377, 443, 501
AluI	AGCT	3 cut(s)	377, 443, 501
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	2 cut(s)	232, 518
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	536
AsiGI	ACCGGT	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	233, 519
BbsI	GAAGAC	3 cut(s)	126, 467, 644
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	2 cut(s)	183, 237
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	2 cut(s)	481, 631
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	2 cut(s)	183, 237
BmgT120I	GGNCC	2 cut(s)	233, 519
BmrFI	CCNGG	2 cut(s)	183, 237
BmsI	GCATC	2 cut(s)	327, 543
BoxI	GACNNNNGTC	1 cut(s)	276
BpiI	GAAGAC	3 cut(s)	126, 467, 644
BpuEI	CTTGAG	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	235, 236, 522
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 182
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	274, 438
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	183, 237
BseDI	CCNNGG	3 cut(s)	235, 236, 522
BseGI	GGATG	3 cut(s)	246, 342, 558
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	130, 182
BseNI	ACTGG	2 cut(s)	274, 438
BseXI	GCAGC	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	2 cut(s)	234, 520
BshTI	ACCGGT	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	130, 182
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	234, 520
Bsp143I	GATC	3 cut(s)	481, 631, 645
BspACI	CCGC	3 cut(s)	45, 367, 653
BspANI	GGCC	2 cut(s)	234, 520
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	274, 438
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	235, 236, 522
BssMI	GATC	3 cut(s)	481, 631, 645
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	183, 237
Bst4CI	ACNGT	3 cut(s)	319, 421, 466
BstACI	GRCGYC	1 cut(s)	49
BstF5I	GGATG	3 cut(s)	246, 342, 558
BstKTI	GATC	3 cut(s)	484, 634, 648
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	481, 631, 645
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	2 cut(s)	183, 237
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	181, 235
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	3 cut(s)	126, 467, 644
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	234, 520
BtsCI	GGATG	3 cut(s)	246, 342, 558
BtsIMutI	CAGTG	3 cut(s)	281, 315, 431
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	233, 519
CseI	GACGC	2 cut(s)	57, 116
CspAI	ACCGGT	1 cut(s)	384
CviJI	RGCY	8 cut(s)	138, 234, 377, 443, 453, 501, 520, 663
CviKI_1	RGCY	8 cut(s)	138, 234, 377, 443, 453, 501, 520, 663
DpnI	GATC	3 cut(s)	483, 633, 647
DpnII	GATC	3 cut(s)	481, 631, 645
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	522
EcoRII	CCWGG	2 cut(s)	181, 235
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	184
FaiI	YATR	4 cut(s)	129, 131, 414, 591
FaqI	GGGAC	1 cut(s)	264
FbaI	TGATCA	2 cut(s)	481, 631
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	3 cut(s)	253, 349, 565
Fsp4HI	GCNGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	234, 520
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	2 cut(s)	57, 116
Hin1I	GRCGYC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	31, 58, 171, 636
Hpy188III	TCNNGA	2 cut(s)	380, 613
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	63, 392, 542
HpyCH4III	ACNGT	3 cut(s)	319, 421, 466
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	204, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	193
Hsp92I	GRCGYC	1 cut(s)	49
Ksp22I	TGATCA	2 cut(s)	481, 631
Kzo9I	GATC	3 cut(s)	481, 631, 645
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	2 cut(s)	327, 543
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	5 cut(s)	197, 269, 313, 421, 592
MalI	GATC	3 cut(s)	483, 633, 647
MboI	GATC	3 cut(s)	481, 631, 645
MboII	GAAGA	7 cut(s)	71, 74, 77, 131, 172, 472, 649
MluCI	AATT	3 cut(s)	101, 510, 536
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	9 cut(s)	128, 134, 147, 205, 295, 346, 525, 567, 595
MseI	TTAA	2 cut(s)	143, 468
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	183, 237
MvaI	CCWGG	2 cut(s)	183, 237
MwoI	GCNNNNNNNGC	1 cut(s)	346
NdeII	GATC	3 cut(s)	481, 631, 645
NmuCI	GTSAC	3 cut(s)	269, 313, 421
PasI	CCCWGGG	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	1 cut(s)	376
PshAI	GACNNNNGTC	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	181, 235
PspGI	CCWGG	2 cut(s)	181, 235
PspPI	GGNCC	2 cut(s)	233, 519
PstI	CTGCAG	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	143, 468
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	481, 631, 645
Sau96I	GGNCC	2 cut(s)	233, 519
ScrFI	CCNGG	2 cut(s)	183, 237
SfaNI	GCATC	2 cut(s)	327, 543
SfcI	CTRYAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	3 cut(s)	101, 510, 536
SsiI	CCGC	3 cut(s)	45, 367, 653
StyD4I	CCNGG	2 cut(s)	181, 235
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	319, 421, 466
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	101, 510, 536
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	143, 468
Tru9I	TTAA	2 cut(s)	143, 468
TscAI	CASTG	3 cut(s)	281, 322, 438
TseFI	GTSAC	3 cut(s)	269, 313, 421
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	3 cut(s)	269, 313, 421
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	3 cut(s)	281, 322, 438
XapI	RAATTY	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.