Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Forward (+)

1844683 .. 1847287

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCGAAGCAAATACGGAAGGTGTTGCTGCTGCTTCTGTTGTGCGCTCTGTGCCACGCTCTCACGGCCATTGCAGGGAAGAGCTATTACGAGATACTGCAGGTGCCAAAGGGAGCCTCCGACGAGCAGATCAAGAGGGCCTACAGAAAGCTCGCCTTGAAGTACCATCCCGATAAGAACCAGGGCAATGAGGAGGCCAATCAACGATTCGCAGACATTAACAATGCCTACGAGGTGCTTTCCGATAGCGATAAGAGGAGCATTTACGATAGGTATGGAGAAGACGGTCTCAAACAGCACGCCGCCAGTGGAGGAAGAGGTGGTGGAGGCATGGGAATGAACATCAATGACATCTTCGCCGATTTCTTTGGTGGTGGACGCTCTGCTGAAGAGGAAGATAAAATCGTCAAGGGTGATGATGTAGTCATCGAATTGGATGCATCATTGGAAGACCTCTATATGGGAGGTTCATTGCAGGTTTGGAGGGAGAAGAACGTTATAAAGTCAGCACCAGGAAAGAGACGTTGTAACTGTCGAAATGAGGTCTATCACAGGCAAATCGGTCCGGGAATGTTCCAACAGATGACGGAACAGGTCTGCGAACAATGTAACAATTTTAAATATGAAAGGGAGGGATATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCAAAATTGATGGAGAACCTGGAGATTTAAAATTTCGCATCCGCACGGCACCTCATGACCAGTTCAGAAGGGAAGGCAATGACTTGCATACAACCATCACTATCACACTGGTTCAAGCTCTGGTTGGCTTTGAGAAGACCATTAAACACCTTGATGATCATTTGGTGGACATCAGCTCAAAGAAAATTACAAAGCCCAAGGAAGTCAGAAAATTCAAAGGGGAAGGGATGCCTTTGCACTTCCACTCAAAGAAAGGAGACTTATACGTCACATTTGAGGTTCTATTCCCCACTTCACTAACAGAAGAGCAGAAGACAAAGATCAAAGCTGTTCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

350

Amino Acids

39.48

Weight (kDa)

6.39

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	28 - 90	1.6e-28	DnaJ domain
DnaJ_C	PF01556	142 - 333	7.4e-36	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AarI	CACCTGC	1 cut(s)	91
AasI	GACNNNNNNGTC	1 cut(s)	974
Acc36I	ACCTGC	2 cut(s)	91, 466
AccB1I	GGYRCC	2 cut(s)	103, 757
AciI	CCGC	2 cut(s)	303, 751
AclI	AACGTT	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	740, 920
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	75, 460
AgsI	TTSAA	3 cut(s)	160, 824, 925
AjnI	CCWGG	3 cut(s)	180, 511, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	5 cut(s)	84, 151, 827, 885, 1037
AluI	AGCT	5 cut(s)	84, 151, 827, 885, 1037
Alw26I	GTCTC	3 cut(s)	293, 514, 960
AoxI	GGCC	3 cut(s)	66, 138, 195
ApeKI	GCWGC	2 cut(s)	28, 31
ApoI	RAATTY	2 cut(s)	740, 920
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	138, 563
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	425, 716
AvaII	GGWCC	1 cut(s)	563
BanI	GGYRCC	2 cut(s)	103, 757
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
BbsI	GAAGAC	4 cut(s)	288, 456, 851, 1028
BbvI	GCAGC	2 cut(s)	15, 18
BccI	CCATC	5 cut(s)	174, 668, 695, 713, 812
BceAI	ACGGC	2 cut(s)	81, 771
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	3 cut(s)	182, 513, 729
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	293, 514, 960
BfmI	CTRYAG	2 cut(s)	98, 142
BfuAI	ACCTGC	2 cut(s)	91, 466
BisI	GCNGC	3 cut(s)	29, 32, 303
BlsI	GCNGC	3 cut(s)	30, 33, 304
Bme1390I	CCNGG	4 cut(s)	182, 513, 567, 729
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	138, 563
BmiI	GGNNCC	3 cut(s)	105, 115, 759
BmrFI	CCNGG	4 cut(s)	182, 513, 567, 729
BmsI	GCATC	5 cut(s)	427, 449, 657, 756, 927
BpiI	GAAGAC	4 cut(s)	288, 456, 851, 1028
BpmI	CTGGAG	1 cut(s)	750
BpuMI	CCSGG	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	181, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 460
Bse1I	ACTGG	3 cut(s)	306, 769, 822
Bse3DI	GCAATG	4 cut(s)	69, 193, 470, 793
BseBI	CCWGG	3 cut(s)	182, 513, 729
BseDI	CCNNGG	2 cut(s)	181, 906
BseGI	GGATG	6 cut(s)	166, 442, 672, 706, 747, 942
BseLI	CCNNNNNNNGG	2 cut(s)	75, 460
BseMI	GCAATG	4 cut(s)	69, 193, 470, 793
BseNI	ACTGG	3 cut(s)	306, 769, 822
BseRI	GAGGAG	2 cut(s)	206, 271
BseXI	GCAGC	2 cut(s)	15, 18
BshFI	GGCC	3 cut(s)	68, 140, 197
BshNI	GGYRCC	2 cut(s)	103, 757
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	75, 460
BsmAI	GTCTC	3 cut(s)	293, 514, 960
BsmBI	CGTCTC	1 cut(s)	514
BsnI	GGCC	3 cut(s)	68, 140, 197
Bso31I	GGTCTC	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	129, 865, 1029
BspACI	CCGC	2 cut(s)	303, 751
BspANI	GGCC	3 cut(s)	68, 140, 197
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	105, 115, 759
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	2 cut(s)	91, 466
BspQI	GCTCTTC	2 cut(s)	74, 1008
BspT107I	GGYRCC	2 cut(s)	103, 757
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	4 cut(s)	69, 193, 470, 793
BsrI	ACTGG	3 cut(s)	306, 769, 822
BssECI	CCNNGG	2 cut(s)	181, 906
BssMI	GATC	3 cut(s)	129, 865, 1029
BssT1I	CCWWGG	1 cut(s)	906
Bst2UI	CCWGG	3 cut(s)	182, 513, 729
Bst4CI	ACNGT	3 cut(s)	287, 533, 649
Bst6I	CTCTTC	4 cut(s)	74, 310, 384, 1008
BstC8I	GCNNGC	2 cut(s)	153, 300
BstF5I	GGATG	6 cut(s)	166, 442, 672, 706, 747, 942
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	132, 868, 1032
BstMAI	GTCTC	3 cut(s)	293, 514, 960
BstMBI	GATC	3 cut(s)	129, 865, 1029
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 65
BstNI	CCWGG	3 cut(s)	182, 513, 729
BstSCI	CCNGG	4 cut(s)	180, 511, 565, 727
BstSFI	CTRYAG	2 cut(s)	98, 142
BstV1I	GCAGC	2 cut(s)	15, 18
BstV2I	GAAGAC	4 cut(s)	288, 456, 851, 1028
BsuRI	GGCC	3 cut(s)	68, 140, 197
BtsCI	GGATG	6 cut(s)	166, 442, 672, 706, 747, 942
BtsIMutI	CAGTG	3 cut(s)	313, 645, 815
BveI	ACCTGC	2 cut(s)	91, 466
Cac8I	GCNNGC	2 cut(s)	153, 300
CciI	TCATGA	1 cut(s)	763
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	138, 563
CpoI	CGGWCCG	1 cut(s)	563
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	163
CspI	CGGWCCG	1 cut(s)	563
CviAII	CATG	2 cut(s)	331, 764
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	3 cut(s)	131, 867, 1031
DpnII	GATC	3 cut(s)	129, 865, 1029
DraI	TTTAAA	2 cut(s)	619, 738
DrdI	GACNNNNNNGTC	1 cut(s)	974
DseDI	GACNNNNNNGTC	1 cut(s)	974
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	4 cut(s)	74, 310, 384, 1008
EarI	CTCTTC	4 cut(s)	74, 310, 384, 1008
Eco130I	CCWWGG	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	180, 511, 727
EcoT14I	CCWWGG	1 cut(s)	906
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	906
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	2 cut(s)	334, 767
FalI	AAGNNNNNCTT	3 cut(s)	140, 172, 1026
FatI	CATG	2 cut(s)	330, 763
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	3 cut(s)	29, 32, 303
FokI	GGATG	6 cut(s)	153, 449, 679, 713, 734, 949
Fsp4HI	GCNGC	3 cut(s)	29, 32, 303
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	29, 32, 303
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	3 cut(s)	68, 140, 197
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	334, 767
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	2 cut(s)	425, 716
Hpy166II	GTNNAC	3 cut(s)	377, 707, 877
Hpy188I	TCNGA	4 cut(s)	121, 244, 776, 917
Hpy188III	TCNNGA	3 cut(s)	133, 170, 764
Hpy8I	GTNNAC	3 cut(s)	377, 707, 877
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	13, 771, 776, 926
HpyCH4III	ACNGT	3 cut(s)	287, 533, 649
HpyCH4IV	ACGT	3 cut(s)	495, 523, 975
HpyCH4V	TGCA	7 cut(s)	74, 100, 440, 475, 670, 796, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 65
HpySE526I	ACGT	3 cut(s)	495, 523, 975
Hsp92II	CATG	2 cut(s)	334, 767
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	3 cut(s)	129, 865, 1029
LguI	GCTCTTC	2 cut(s)	74, 1008
LmnI	GCTCC	2 cut(s)	113, 258
Lsp1109I	GCAGC	2 cut(s)	15, 18
LweI	GCATC	5 cut(s)	427, 449, 657, 756, 927
MaeII	ACGT	3 cut(s)	495, 523, 975
MaeIII	GTNAC	3 cut(s)	527, 608, 976
MalI	GATC	3 cut(s)	131, 867, 1031
MboI	GATC	3 cut(s)	129, 865, 1029
MluCI	AATT	6 cut(s)	431, 613, 714, 740, 894, 920
MmeI	TCCRAC	2 cut(s)	144, 601
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	4 cut(s)	219, 618, 737, 852
MslI	CAYNNNNRTG	2 cut(s)	335, 861
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	4 cut(s)	182, 513, 567, 729
MvaI	CCWGG	3 cut(s)	182, 513, 729
MwoI	GCNNNNNNNGC	2 cut(s)	51, 65
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	3 cut(s)	129, 865, 1029
NlaIII	CATG	2 cut(s)	334, 767
NlaIV	GGNNCC	3 cut(s)	105, 115, 759
NmuCI	GTSAC	1 cut(s)	976
NsiI	ATGCAT	1 cut(s)	442
PagI	TCATGA	1 cut(s)	763
PaqCI	CACCTGC	1 cut(s)	91
PciSI	GCTCTTC	2 cut(s)	74, 1008
PfeI	GAWTC	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	30, 33, 304
PsiI	TTATAA	1 cut(s)	500
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	180, 511, 727
PspGI	CCWGG	3 cut(s)	180, 511, 727
PspN4I	GGNNCC	3 cut(s)	105, 115, 759
PspPI	GGNCC	2 cut(s)	138, 563
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	335, 861
Rsr2I	CGGWCCG	1 cut(s)	563
RsrII	CGGWCCG	1 cut(s)	563
SapI	GCTCTTC	2 cut(s)	74, 1008
SaqAI	TTAA	4 cut(s)	219, 618, 737, 852
SatI	GCNGC	3 cut(s)	29, 32, 303
Sau3AI	GATC	3 cut(s)	129, 865, 1029
Sau96I	GGNCC	2 cut(s)	138, 563
ScrFI	CCNGG	4 cut(s)	182, 513, 567, 729
SfaNI	GCATC	5 cut(s)	427, 449, 657, 756, 927
SfcI	CTRYAG	2 cut(s)	98, 142
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	2 cut(s)	335, 861
Sse9I	AATT	6 cut(s)	431, 613, 714, 740, 894, 920
SsiI	CCGC	2 cut(s)	303, 751
StyD4I	CCNGG	4 cut(s)	180, 511, 565, 727
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	3 cut(s)	287, 533, 649
TaiI	ACGT	3 cut(s)	498, 526, 978
TaqI	TCGA	2 cut(s)	429, 535
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	6 cut(s)	431, 613, 714, 740, 894, 920
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	4 cut(s)	219, 618, 737, 852
Tru9I	TTAA	4 cut(s)	219, 618, 737, 852
TscAI	CASTG	3 cut(s)	313, 652, 822
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	2 cut(s)	28, 31
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	4 cut(s)	353, 459, 631, 639
TspGWI	ACGGA	2 cut(s)	31, 602
TspRI	CASTG	3 cut(s)	313, 652, 822
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	2 cut(s)	740, 920
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.