Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

37286906 .. 37290464

Gene Structure 3559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1297000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGCATCAGAGAACCAAGGTTGTACTTGTGTTCCTCTTCTTCCTCTGCTTTGCTGTCGCCGCCGTCATTGCGGCCGCAGGGAAGAGCTATTATGAAATACTGCAGGTGCCCAAGGGAGCCTCCGACGAGCAGATCAAGAGGGCTTACCGGAAGCTCGCCTTGAAGTACCATCCTGATAAGAACCCCGGCAACGAAGAGGCCAACAAACGATTCGCCGACATTAACAACGCATACGAAGTGCTTTCGGATAGCGAGAAGAGGAGCATATACGATAGGTACGGAGAAGAGGGTCTGAAACAGCATGCCGCTACTGGAGGCCGAGGTGGTGGCGGCGGCATGGGAATGAACATCAACGACATCTTTTCCGAGTTTTTTGGTGGCGGACGCCCTTCGGAAGAAGAAGATAGAATCATCAAGGGAGATGATGTAGTCGTCGAATTGGACGCAACATTGGAAGACCTCTATATGGGAGGCTCATTAAAGGTTTGGAGGGAGAAGAACATTCTGAAACCAGCACCAGGCAAGAGACGTTGTAACTGCAGAAATGAGGTCTATCACAGGCAAATCGGTCCAGGGATGTTCCAACAGATGACAGAACAGGTCTGTGACCAGTGTCCCAATGTCAAATATGAAAGGGAGGGATATTTCGTAACTGTTGATATTGAGAAAGGGATGCAAGATGGGCAAGAGGTGGTCTTCTATGAAGATGGTGAGCCTATAATTGATGGAGAACCTGGAGATCTAAAATTCCGTATCCGCACAGCAGCTCACGACCTGTTCAAAAGGGAAGGCAACGACTTACACACAACTATCACTATCACACTGGTTCAAGCTCTTGTTGGCTTTGAGAAGACTGTTAAGCACCTTGATGATCATCTGGTGGACATTAGCTCAAAGGGAATTACAAGGCCCAAGGAAGTGAGGAAATTCAAGGGGGAAGGGATGCCTCTACATTTCAGCAACAAGAAAGGAGATTTGTATGTAACATTTGAGGTTCTATTCCCGAACTCACTAACAGAAGATCAGAAGACAAAGATCAAGGCGGTTCTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

353

Amino Acids

39.62

Weight (kDa)

6.19

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	30 - 92	3.9e-29	DnaJ domain
DnaJ_C	PF01556	145 - 336	4.1e-34	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	9 cut(s)	63, 74, 78, 309, 333, 336, 384, 760, 1046
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	749, 929
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	3 cut(s)	27, 170, 281
AfiI	CCNNNNNNNGG	2 cut(s)	469, 521
AgsI	TTSAA	4 cut(s)	166, 784, 833, 934
AjnI	CCWGG	3 cut(s)	520, 574, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	90, 157, 770, 836, 894
AluI	AGCT	5 cut(s)	90, 157, 770, 836, 894
Alw26I	GTCTC	1 cut(s)	523
AoxI	GGCC	4 cut(s)	75, 201, 319, 911
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	2 cut(s)	749, 929
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	572, 912
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	4 cut(s)	465, 691, 860, 1037
BbvI	GCAGC	1 cut(s)	779
BccI	CCATC	4 cut(s)	180, 677, 704, 722
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	3 cut(s)	522, 576, 738
BciVI	GTATCC	1 cut(s)	767
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	523
BfmI	CTRYAG	2 cut(s)	104, 541
BfuAI	ACCTGC	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	767
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	7 cut(s)	63, 75, 78, 309, 334, 337, 768
BlsI	GCNGC	7 cut(s)	64, 76, 79, 310, 335, 338, 769
Bme1390I	CCNGG	4 cut(s)	189, 522, 576, 738
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	572, 912
BmiI	GGNNCC	2 cut(s)	111, 121
BmrFI	CCNGG	4 cut(s)	189, 522, 576, 738
BmsI	GCATC	3 cut(s)	16, 666, 936
BoxI	GACNNNNGTC	1 cut(s)	615
BpiI	GAAGAC	4 cut(s)	465, 691, 860, 1037
BpmI	CTGGAG	2 cut(s)	336, 759
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	876
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	6 cut(s)	18, 114, 187, 322, 575, 915
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 521
Bse1I	ACTGG	3 cut(s)	319, 613, 831
Bse3DI	GCAATG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	3 cut(s)	522, 576, 738
BseDI	CCNNGG	6 cut(s)	18, 114, 187, 322, 575, 915
BseGI	GGATG	4 cut(s)	172, 585, 681, 951
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	2 cut(s)	469, 521
BseMI	GCAATG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	319, 613, 831
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	779
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	77, 203, 321, 913
BshNI	GGYRCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	151, 189
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	469, 521
BsmAI	GTCTC	1 cut(s)	523
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	4 cut(s)	77, 203, 321, 913
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	135, 742, 874, 1024, 1038
BspACI	CCGC	9 cut(s)	63, 74, 78, 309, 333, 336, 384, 760, 1046
BspANI	GGCC	4 cut(s)	77, 203, 321, 913
BspLI	GGNNCC	2 cut(s)	111, 121
BspMAI	CTGCAG	2 cut(s)	108, 545
BspMI	ACCTGC	1 cut(s)	97
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	319, 613, 831
BssECI	CCNNGG	6 cut(s)	18, 114, 187, 322, 575, 915
BssMI	GATC	5 cut(s)	135, 742, 874, 1024, 1038
BssNI	GRCGYC	1 cut(s)	388
BssT1I	CCWWGG	3 cut(s)	18, 114, 915
Bst2UI	CCWGG	3 cut(s)	522, 576, 738
Bst4CI	ACNGT	2 cut(s)	658, 859
Bst6I	CTCTTC	5 cut(s)	44, 80, 192, 254, 282
BstACI	GRCGYC	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	159, 306
BstF5I	GGATG	4 cut(s)	172, 585, 681, 951
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	5 cut(s)	138, 745, 877, 1027, 1041
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	5 cut(s)	135, 742, 874, 1024, 1038
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 71, 685
BstNI	CCWGG	3 cut(s)	522, 576, 738
BstNSI	RCATGY	1 cut(s)	308
BstPAI	GACNNNNGTC	1 cut(s)	615
BstSCI	CCNGG	4 cut(s)	187, 520, 574, 736
BstSFI	CTRYAG	2 cut(s)	104, 541
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	779
BstV2I	GAAGAC	4 cut(s)	465, 691, 860, 1037
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BstZI	CGGCCG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	767
BsuRI	GGCC	4 cut(s)	77, 203, 321, 913
BtsCI	GGATG	4 cut(s)	172, 585, 681, 951
BtsIMutI	CAGTG	2 cut(s)	620, 824
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	159, 306
CciNI	GCGGCCGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	572, 912
CseI	GACGC	2 cut(s)	396, 455
Csp6I	GTAC	3 cut(s)	26, 169, 280
CviAII	CATG	2 cut(s)	305, 340
CviQI	GTAC	3 cut(s)	26, 169, 280
DpnI	GATC	5 cut(s)	137, 744, 876, 1026, 1040
DpnII	GATC	5 cut(s)	135, 742, 874, 1024, 1038
EaeI	YGGCCR	1 cut(s)	75
EagI	CGGCCG	1 cut(s)	75
Eam1104I	CTCTTC	5 cut(s)	44, 80, 192, 254, 282
EarI	CTCTTC	5 cut(s)	44, 80, 192, 254, 282
EciI	GGCGGA	1 cut(s)	399
EclXI	CGGCCG	1 cut(s)	75
Eco130I	CCWWGG	3 cut(s)	18, 114, 915
Eco47I	GGWCC	1 cut(s)	572
Eco52I	CGGCCG	1 cut(s)	75
EcoRII	CCWGG	3 cut(s)	520, 574, 736
EcoT14I	CCWWGG	3 cut(s)	18, 114, 915
ErhI	CCWWGG	3 cut(s)	18, 114, 915
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	2 cut(s)	308, 343
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	2 cut(s)	304, 339
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	7 cut(s)	63, 75, 78, 309, 334, 337, 768
FokI	GGATG	4 cut(s)	159, 592, 688, 958
Fsp4HI	GCNGC	7 cut(s)	63, 75, 78, 309, 334, 337, 768
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	7 cut(s)	63, 75, 78, 309, 334, 337, 768
GsuI	CTGGAG	2 cut(s)	336, 759
HaeIII	GGCC	4 cut(s)	77, 203, 321, 913
HapII	CCGG	2 cut(s)	151, 189
HgaI	GACGC	2 cut(s)	396, 455
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	308, 343
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	213, 411
HpaII	CCGG	2 cut(s)	151, 189
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	886
Hpy188I	TCNGA	8 cut(s)	12, 127, 250, 297, 370, 397, 510, 1029
Hpy188III	TCNNGA	4 cut(s)	139, 176, 773, 1006
Hpy8I	GTNNAC	1 cut(s)	886
Hpy99I	CGWCG	2 cut(s)	131, 440
HpyAV	CCTTC	3 cut(s)	402, 785, 935
HpyCH4III	ACNGT	2 cut(s)	658, 859
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	3 cut(s)	106, 543, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 71, 685
HpySE526I	ACGT	1 cut(s)	532
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	308, 343
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	5 cut(s)	135, 742, 874, 1024, 1038
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	119, 264
Lsp1109I	GCAGC	1 cut(s)	779
LweI	GCATC	3 cut(s)	16, 666, 936
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	4 cut(s)	536, 608, 652, 985
MalI	GATC	5 cut(s)	137, 744, 876, 1026, 1040
MboI	GATC	5 cut(s)	135, 742, 874, 1024, 1038
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	5 cut(s)	440, 723, 749, 903, 929
MmeI	TCCRAC	2 cut(s)	150, 610
MseI	TTAA	3 cut(s)	225, 482, 861
MslI	CAYNNNNRTG	2 cut(s)	344, 870
MspI	CCGG	2 cut(s)	151, 189
MspR9I	CCNGG	4 cut(s)	189, 522, 576, 738
MvaI	CCWGG	3 cut(s)	522, 576, 738
MwoI	GCNNNNNNNGC	3 cut(s)	62, 71, 685
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	5 cut(s)	135, 742, 874, 1024, 1038
NlaIII	CATG	2 cut(s)	308, 343
NlaIV	GGNNCC	2 cut(s)	111, 121
NmeAIII	GCCGAG	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	608
NotI	GCGGCCGC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	213, 411
PkrI	GCNGC	7 cut(s)	64, 76, 79, 310, 335, 338, 769
PshAI	GACNNNNGTC	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	520, 574, 736
PspGI	CCWGG	3 cut(s)	520, 574, 736
PspN4I	GGNNCC	2 cut(s)	111, 121
PspPI	GGNCC	2 cut(s)	572, 912
PstI	CTGCAG	2 cut(s)	108, 545
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	3 cut(s)	27, 170, 281
RsaNI	GTAC	3 cut(s)	26, 169, 280
RseI	CAYNNNNRTG	2 cut(s)	344, 870
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	225, 482, 861
SatI	GCNGC	7 cut(s)	63, 75, 78, 309, 334, 337, 768
Sau3AI	GATC	5 cut(s)	135, 742, 874, 1024, 1038
Sau96I	GGNCC	2 cut(s)	572, 912
ScrFI	CCNGG	4 cut(s)	189, 522, 576, 738
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	3 cut(s)	16, 666, 936
SfcI	CTRYAG	2 cut(s)	104, 541
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	344, 870
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	5 cut(s)	440, 723, 749, 903, 929
SsiI	CCGC	9 cut(s)	63, 74, 78, 309, 333, 336, 384, 760, 1046
StyD4I	CCNGG	4 cut(s)	187, 520, 574, 736
StyI	CCWWGG	3 cut(s)	18, 114, 915
TaaI	ACNGT	2 cut(s)	658, 859
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	1 cut(s)	438
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	5 cut(s)	440, 723, 749, 903, 929
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	6 cut(s)	65, 77, 80, 311, 336, 339
TfiI	GAWTC	2 cut(s)	213, 411
Tru1I	TTAA	3 cut(s)	225, 482, 861
Tru9I	TTAA	3 cut(s)	225, 482, 861
TscAI	CASTG	2 cut(s)	620, 831
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	111, 362, 648, 720
TspGWI	ACGGA	2 cut(s)	297, 743
TspRI	CASTG	2 cut(s)	620, 831
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	749, 929
XceI	RCATGY	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.