Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

69714405 .. 69718591

Gene Structure 4187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG518400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAATCTGTGTATGTGTGTGTGTGTGTAGGGTGGGGGATCCGGTCACTGTTTATATCTGTCGTCTATTCTTACAACATGAAAGGAGAAACTAAGTTTGCCGATGGTCTGATCTTTTTACTTATGCATGGCTTCTTATGTGGCCTTTGTCAGGTTTGGAGGGAGAAGAACGTTATAAAGCCAGCACCAGGAAAGAGACGTTGTAACTGTAGAAATGAGGTCTATCACAGGCAAATCGGTCCGGGAATGTTCCAACAGATGACAGAACAGGTCTGCGAACAATGTAACAATGTTAAATATGAAAGGGAGGGATATTTCATCACTGTTGATATTGAGAAAGGGATGCAAGATGGACAAGAGGTGGTTTTCTATGAGGATGGTGAACCCATAATTGATGGAGAACCTGGAGATTTAAAATTCCGTATCCGCACGGCACCTCATGACCAGTTCAGAAGGGAAGGCAATGACTTGCATACAACCATCACTATCACACTGGTTCAAGCTCTGGTTGGCTTTGAGAAGACCATTAAACACCTTGATGATCATTTGGTGGACATCAGCTCAAAGGTTTTATACTTGCTATATGTTCAATATATGATGGCAATTTTTTTTTTTTTTGGTTATATACGACTGAAGGCTATAATTAACATTACATTCGTAACAACGCAGAAAATTACAAAGCCCAAGGAAGTCAGAAAATTCAAAGGGGAAGGGATGCCTTTGCACTTCCACTCAAAGAAAGGAGACTTATACGTCACATTTGAGGTTCTATTCCCCACTTCACTAACAGAAGAGCAGAAGACAAAGATCAAAGCTGTTCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

275

Amino Acids

31.81

Weight (kDa)

8.32

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	101 - 259	3.5e-28	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AasI	GACNNNNNNGTC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	433
AciI	CCGC	1 cut(s)	427
AclI	AACGTT	1 cut(s)	171
AclWI	GGATC	2 cut(s)	34, 47
AcsI	RAATTY	2 cut(s)	416, 698
AcuI	CTGAAG	1 cut(s)	653
AfiI	CCNNNNNNNGG	2 cut(s)	151, 188
AgsI	TTSAA	3 cut(s)	500, 590, 703
AjnI	CCWGG	2 cut(s)	187, 403
AluBI	AGCT	3 cut(s)	503, 561, 815
AluI	AGCT	3 cut(s)	503, 561, 815
Alw26I	GTCTC	2 cut(s)	190, 738
AlwI	GGATC	2 cut(s)	34, 47
AoxI	GGCC	1 cut(s)	142
ApoI	RAATTY	2 cut(s)	416, 698
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	527, 806
BccI	CCATC	6 cut(s)	98, 344, 371, 389, 488, 592
BceAI	ACGGC	1 cut(s)	447
BciT130I	CCWGG	2 cut(s)	189, 405
BciVI	GTATCC	1 cut(s)	434
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	190, 738
BfmI	CTRYAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	434
Bme1390I	CCNGG	3 cut(s)	189, 243, 405
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	41, 435
BmrFI	CCNGG	3 cut(s)	189, 243, 405
BmsI	GCATC	2 cut(s)	333, 705
BpiI	GAAGAC	2 cut(s)	527, 806
BpmI	CTGGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 188
Bse1I	ACTGG	2 cut(s)	445, 498
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	189, 405
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	3 cut(s)	348, 382, 720
BseLI	CCNNNNNNNGG	2 cut(s)	151, 188
BseMI	GCAATG	1 cut(s)	469
BseNI	ACTGG	2 cut(s)	445, 498
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	43, 242
BslI	CCNNNNNNNGG	2 cut(s)	151, 188
BsmAI	GTCTC	2 cut(s)	190, 738
BsmBI	CGTCTC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	39, 111, 541, 807
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	41, 435
BspPI	GGATC	2 cut(s)	34, 47
BspQI	GCTCTTC	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	445, 498
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	4 cut(s)	39, 111, 541, 807
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	189, 405
Bst4CI	ACNGT	3 cut(s)	51, 209, 325
Bst6I	CTCTTC	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	348, 382, 720
BstKTI	GATC	4 cut(s)	42, 114, 544, 810
BstMAI	GTCTC	2 cut(s)	190, 738
BstMBI	GATC	4 cut(s)	39, 111, 541, 807
BstNI	CCWGG	2 cut(s)	189, 405
BstSCI	CCNGG	3 cut(s)	187, 241, 403
BstSFI	CTRYAG	1 cut(s)	208
BstV2I	GAAGAC	2 cut(s)	527, 806
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	348, 382, 720
BtsIMutI	CAGTG	3 cut(s)	47, 321, 491
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	239
CpoI	CGGWCCG	1 cut(s)	239
CspI	CGGWCCG	1 cut(s)	239
CviAII	CATG	3 cut(s)	79, 128, 440
CviJI	RGCY	9 cut(s)	132, 144, 181, 503, 513, 561, 638, 682, 815
CviKI_1	RGCY	9 cut(s)	132, 144, 181, 503, 513, 561, 638, 682, 815
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	4 cut(s)	41, 113, 543, 809
DpnII	GATC	4 cut(s)	39, 111, 541, 807
DraI	TTTAAA	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	752
DseDI	GACNNNNNNGTC	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	187, 403
EcoT14I	CCWWGG	1 cut(s)	684
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	684
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	3 cut(s)	82, 131, 443
FalI	AAGNNNNNCTT	1 cut(s)	804
FatI	CATG	3 cut(s)	78, 127, 439
FbaI	TGATCA	1 cut(s)	541
FokI	GGATG	3 cut(s)	355, 389, 727
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	2 cut(s)	43, 242
Hin1II	CATG	3 cut(s)	82, 131, 443
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	43, 242
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	2 cut(s)	383, 553
Hpy188I	TCNGA	3 cut(s)	111, 452, 695
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	383, 553
HpyAV	CCTTC	4 cut(s)	447, 452, 628, 704
HpyCH4III	ACNGT	3 cut(s)	51, 209, 325
HpyCH4IV	ACGT	3 cut(s)	171, 199, 753
HpyCH4V	TGCA	4 cut(s)	127, 346, 472, 724
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	3 cut(s)	171, 199, 753
Hsp92II	CATG	3 cut(s)	82, 131, 443
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	39, 111, 541, 807
LguI	GCTCTTC	1 cut(s)	786
LweI	GCATC	2 cut(s)	333, 705
MaeII	ACGT	3 cut(s)	171, 199, 753
MaeIII	GTNAC	5 cut(s)	45, 203, 284, 658, 754
MalI	GATC	4 cut(s)	41, 113, 543, 809
MboI	GATC	4 cut(s)	39, 111, 541, 807
MboII	GAAGA	4 cut(s)	178, 532, 803, 811
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	6 cut(s)	390, 416, 603, 642, 672, 698
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	153, 211, 301, 352, 367, 447, 757
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	4 cut(s)	294, 413, 528, 645
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	2 cut(s)	43, 242
MspR9I	CCNGG	3 cut(s)	189, 243, 405
MvaI	CCWGG	2 cut(s)	189, 405
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	4 cut(s)	39, 111, 541, 807
NlaIII	CATG	3 cut(s)	82, 131, 443
NlaIV	GGNNCC	2 cut(s)	41, 435
NmuCI	GTSAC	2 cut(s)	45, 754
NsiI	ATGCAT	1 cut(s)	129
PagI	TCATGA	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	786
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	176
Psp1406I	AACGTT	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	187, 403
PspGI	CCWGG	2 cut(s)	187, 403
PspN4I	GGNNCC	2 cut(s)	41, 435
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	537
Rsr2I	CGGWCCG	1 cut(s)	239
RsrII	CGGWCCG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	4 cut(s)	294, 413, 528, 645
Sau3AI	GATC	4 cut(s)	39, 111, 541, 807
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	189, 243, 405
SfaNI	GCATC	2 cut(s)	333, 705
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	6 cut(s)	390, 416, 603, 642, 672, 698
SsiI	CCGC	1 cut(s)	427
StyD4I	CCNGG	3 cut(s)	187, 241, 403
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	3 cut(s)	51, 209, 325
TaiI	ACGT	3 cut(s)	174, 202, 756
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	6 cut(s)	390, 416, 603, 642, 672, 698
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	4 cut(s)	294, 413, 528, 645
Tru9I	TTAA	4 cut(s)	294, 413, 528, 645
TscAI	CASTG	3 cut(s)	54, 328, 498
TseFI	GTSAC	2 cut(s)	45, 754
Tsp45I	GTSAC	2 cut(s)	45, 754
TspDTI	ATGAA	3 cut(s)	95, 307, 315
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	3 cut(s)	54, 328, 498
VpaK11BI	GGWCC	1 cut(s)	239
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	2 cut(s)	416, 698
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.