Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8135076.1

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 634

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8135076.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 323 bp

tctatgaggatggtgaacccataattgatggagaacctggagatttaaaatttcgtatccgcacggcacctcatgaccagttcagaagggaaggcaatgacttgcatacaaccatcactatcacactggttcaagctctggttggctttgagaagaccattaaacaccttgatgatcatttggtggacatcagctcaaagaaaattacaaagcccaaggaagtcagaaaattcaaaggggaagggatgcctttgcacttccactcaaagaaaggagacttatacgtcacatttgaggttctattccccacttcactaacagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

107

Amino Acids

12.26

Weight (kDa)

6.32

Isoelectric Point (pI)

18.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	66
AciI	CCGC	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	49, 229
AgsI	TTSAA	2 cut(s)	133, 234
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	2 cut(s)	136, 194
AluI	AGCT	2 cut(s)	136, 194
Alw26I	GTCTC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	49, 229
AsuHPI	GGTGA	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	160
BccI	CCATC	3 cut(s)	4, 22, 121
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	38
BciVI	GTATCC	1 cut(s)	67
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	78, 131
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	15, 251
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	78, 131
BshNI	GGYRCC	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	78, 131
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	15, 251
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	15, 251
BtsIMutI	CAGTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	72
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	4 cut(s)	136, 146, 194, 213
CviKI_1	RGCY	4 cut(s)	136, 146, 194, 213
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	47
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	1 cut(s)	76
FaiI	YATR	5 cut(s)	5, 22, 74, 107, 282
FatI	CATG	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	174
FokI	GGATG	2 cut(s)	22, 258
GsuI	CTGGAG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	16, 186
Hpy188I	TCNGA	2 cut(s)	85, 226
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	16, 186
HpyAV	CCTTC	3 cut(s)	80, 85, 235
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	2 cut(s)	105, 255
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	5 cut(s)	23, 50, 91, 112, 124
LweI	GCATC	1 cut(s)	236
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	165
MluCI	AATT	4 cut(s)	23, 49, 203, 229
MnlI	CCTC	2 cut(s)	80, 288
MseI	TTAA	2 cut(s)	46, 161
MslI	CAYNNNNRTG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	285
PagI	TCATGA	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	46, 161
Sau3AI	GATC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	7 cut(s)	39, 72, 138, 170, 196, 287, 299
SfaNI	GCATC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	23, 49, 203, 229
SsiI	CCGC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	287
TasI	AATT	4 cut(s)	23, 49, 203, 229
Tru1I	TTAA	2 cut(s)	46, 161
Tru9I	TTAA	2 cut(s)	46, 161
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
TspRI	CASTG	1 cut(s)	131
XapI	RAATTY	2 cut(s)	49, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.