Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Forward (+)

38491497 .. 38491772

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0347600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGTATATGGGAAAAGGCTGAAGTGATCAAGGTCAGTGATGTGGAGCTTGAGTTTCTCAAAGGAAATCCCAACACTGATGATGAATCTGCTATGAGTCTGTGGCACCCTAACTTGAAGCTCCTCCTTGTCACTCTTGGTGAAAAGGGTTGCAGATACTACACTAAGAATTTCCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTCGCAAAGATTAATCTTCAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

91

Amino Acids

10.07

Weight (kDa)

5.23

Isoelectric Point (pI)

11.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	2 - 87	6e-20	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	105
AciI	CCGC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	118, 269
AluBI	AGCT	3 cut(s)	49, 121, 191
AluI	AGCT	3 cut(s)	49, 121, 191
Alw21I	GWGCWC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	169
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	152, 239
BanI	GGYRCC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	247
BclI	TGATCA	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse1I	ACTGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	43, 75
Cac8I	GCNNGC	1 cut(s)	252
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	4 cut(s)	20, 49, 121, 191
CviKI_1	RGCY	4 cut(s)	20, 49, 121, 191
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	42
FaeI	CATG	1 cut(s)	200
FaiI	YATR	4 cut(s)	8, 10, 95, 198
FatI	CATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	27
FokI	GGATG	1 cut(s)	192
Hin1II	CATG	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	3 cut(s)	86, 97, 230
HphI	GGTGA	2 cut(s)	152, 239
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	46, 126
LpnPI	CCDG	2 cut(s)	204, 210
MaeIII	GTNAC	2 cut(s)	130, 199
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	86, 230
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	36, 51, 123, 193
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	273
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	86, 230
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	43, 82
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	3 cut(s)	99, 185, 222
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	43, 82
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.