Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Forward (+)

38496928 .. 38497846

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTGCAAGATTGCGGGGGTCCAACTTCTGAACGACAGCGTATTATGGCACCCAGCTAATCACGAACCATCGATCCCAAAAAGGGTCTTCTCAGCTCTTGATGGAGGGTCTGTGGCGGGCCGCGACGGGCCAGGACCCGAGCCCAGAAGACTACACCGGCATCGAATTCTGGTCCAACCCCGAACGCGCCGCCTGGCTCACCAAGCAAGGCGAGTACATCAAGACCTGGTCCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCCACGTCACCCCCTCCTCCACCCCACGCGGCGTCATCCCCGTCGGCACCTGCCTCACCGTCAAGGGCGCCGAGGACGTCCTCCACAAGCCCTGCGCCTTCGAGCTCTCCACCACCACCCACGACACCATGTACTTCATCGCCGATACTGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGACGGTCCTTAGTCCAGCACTCCAGATCGCTCGCCGATTACGATAACCGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

167

Amino Acids

18.88

Weight (kDa)

9.66

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	76 - 151	1.1e-10	PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	323
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	323
AccB1I	GGYRCC	3 cut(s)	48, 311, 332
AccII	CGCG	3 cut(s)	123, 187, 294
AciI	CCGC	6 cut(s)	14, 116, 121, 190, 294, 496
AclWI	GGATC	2 cut(s)	67, 443
AcsI	RAATTY	1 cut(s)	165
AcyI	GRCGYC	3 cut(s)	297, 333, 342
AfaI	GTAC	2 cut(s)	216, 398
AfiI	CCNNNNNNNGG	2 cut(s)	82, 450
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	3 cut(s)	130, 192, 225
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	4 cut(s)	56, 95, 247, 370
AluI	AGCT	4 cut(s)	56, 95, 247, 370
Alw21I	GWGCWC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	67, 443
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	118, 128
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	189, 335, 362
AspS9I	GGNCC	7 cut(s)	19, 118, 128, 134, 172, 229, 453
AsuHPI	GGTGA	3 cut(s)	191, 265, 313
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	5 cut(s)	19, 134, 172, 229, 453
BanI	GGYRCC	3 cut(s)	48, 311, 332
BanII	GRGCYC	2 cut(s)	144, 372
BbsI	GAAGAC	2 cut(s)	79, 154
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	3 cut(s)	76, 95, 452
BciT130I	CCWGG	3 cut(s)	132, 194, 227
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	121, 190, 295
BlsI	GCNGC	3 cut(s)	122, 191, 296
Bme1390I	CCNGG	3 cut(s)	132, 194, 227
Bme18I	GGWCC	5 cut(s)	19, 134, 172, 229, 453
BmeT110I	CYCGRG	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	7 cut(s)	19, 118, 128, 134, 172, 229, 453
BmiI	GGNNCC	5 cut(s)	20, 50, 136, 313, 334
BmrFI	CCNGG	3 cut(s)	132, 194, 227
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	79, 154
BpmI	CTGGAG	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	218
Bsa29I	ATCGAT	1 cut(s)	71
BsaHI	GRCGYC	3 cut(s)	297, 333, 342
BsaJI	CCNNGG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 450
Bse118I	RCCGGY	2 cut(s)	156, 498
BseBI	CCWGG	3 cut(s)	132, 194, 227
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	82, 450
BseMII	CTCAG	2 cut(s)	105, 405
BseRI	GAGGAG	2 cut(s)	271, 443
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	3 cut(s)	123, 187, 294
BshFI	GGCC	2 cut(s)	120, 130
BshNI	GGYRCC	3 cut(s)	48, 311, 332
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	157, 499
BslI	CCNNNNNNNGG	2 cut(s)	82, 450
BsnI	GGCC	2 cut(s)	120, 130
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	144, 372
Bsp143I	GATC	3 cut(s)	72, 435, 473
BspACI	CCGC	6 cut(s)	14, 116, 121, 190, 294, 496
BspANI	GGCC	2 cut(s)	120, 130
BspCNI	CTCAG	2 cut(s)	104, 406
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	3 cut(s)	123, 187, 294
BspLI	GGNNCC	5 cut(s)	20, 50, 136, 313, 334
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	67, 443
BspQI	GCTCTTC	1 cut(s)	254
BspT107I	GGYRCC	3 cut(s)	48, 311, 332
BsrFI	RCCGGY	2 cut(s)	156, 498
BssAI	RCCGGY	2 cut(s)	156, 498
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	72, 435, 473
BssNI	GRCGYC	3 cut(s)	297, 333, 342
Bst2UI	CCWGG	3 cut(s)	132, 194, 227
Bst4CI	ACNGT	2 cut(s)	325, 453
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	3 cut(s)	297, 333, 342
BstC8I	GCNNGC	3 cut(s)	118, 245, 480
BstDEI	CTNAG	3 cut(s)	91, 414, 457
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	3 cut(s)	123, 187, 294
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	189, 335, 362
BstKTI	GATC	3 cut(s)	75, 438, 476
BstMBI	GATC	3 cut(s)	72, 435, 473
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 244
BstNI	CCWGG	3 cut(s)	132, 194, 227
BstSCI	CCNGG	3 cut(s)	130, 192, 225
BstUI	CGCG	3 cut(s)	123, 187, 294
BstV2I	GAAGAC	2 cut(s)	79, 154
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	120, 130
BsuTUI	ATCGAT	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	118, 245, 480
CfoI	GCGC	3 cut(s)	189, 335, 362
Cfr10I	RCCGGY	2 cut(s)	156, 498
Cfr13I	GGNCC	7 cut(s)	19, 118, 128, 134, 172, 229, 453
ClaI	ATCGAT	1 cut(s)	71
CseI	GACGC	1 cut(s)	286
CsiI	ACCWGGT	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	215, 397
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	9 cut(s)	56, 95, 120, 130, 142, 197, 247, 355, 370
CviKI_1	RGCY	9 cut(s)	56, 95, 120, 130, 142, 197, 247, 355, 370
CviQI	GTAC	2 cut(s)	215, 397
DdeI	CTNAG	3 cut(s)	91, 414, 457
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	3 cut(s)	74, 437, 475
DpnII	GATC	3 cut(s)	72, 435, 473
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	2 cut(s)	144, 372
Eco47I	GGWCC	5 cut(s)	19, 134, 172, 229, 453
Eco53kI	GAGCTC	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	3 cut(s)	130, 192, 225
EcoT38I	GRGCYC	2 cut(s)	144, 372
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaeI	CATG	1 cut(s)	397
FaiI	YATR	2 cut(s)	46, 395
FatI	CATG	1 cut(s)	393
FauI	CCCGC	2 cut(s)	7, 109
Fnu4HI	GCNGC	3 cut(s)	121, 190, 295
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	2 cut(s)	144, 372
Fsp4HI	GCNGC	3 cut(s)	121, 190, 295
GlaI	GCGC	3 cut(s)	188, 334, 361
GluI	GCNGC	3 cut(s)	121, 190, 295
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	454
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	120, 130
HapII	CCGG	2 cut(s)	157, 499
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	3 cut(s)	189, 335, 362
Hin1I	GRCGYC	3 cut(s)	297, 333, 342
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	3 cut(s)	187, 333, 360
HinP1I	GCGC	3 cut(s)	187, 333, 360
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	157, 499
HphI	GGTGA	3 cut(s)	191, 265, 313
Hpy188I	TCNGA	2 cut(s)	30, 449
Hpy188III	TCNNGA	4 cut(s)	62, 98, 221, 471
Hpy99I	CGWCG	2 cut(s)	128, 311
HpyAV	CCTTC	3 cut(s)	373, 412, 418
HpyCH4III	ACNGT	2 cut(s)	325, 453
HpyCH4IV	ACGT	2 cut(s)	270, 342
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 244
HpyF3I	CTNAG	3 cut(s)	91, 414, 457
HpySE526I	ACGT	2 cut(s)	270, 342
Hsp92I	GRCGYC	3 cut(s)	297, 333, 342
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	3 cut(s)	187, 333, 360
KasI	GGCGCC	1 cut(s)	332
Kzo9I	GATC	3 cut(s)	72, 435, 473
LguI	GCTCTTC	1 cut(s)	254
LweI	GCATC	1 cut(s)	169
MabI	ACCWGGT	1 cut(s)	225
MaeII	ACGT	2 cut(s)	270, 342
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	74, 437, 475
MboI	GATC	3 cut(s)	72, 435, 473
MboII	GAAGA	3 cut(s)	79, 159, 241
MhlI	GDGCHC	2 cut(s)	144, 372
MluCI	AATT	1 cut(s)	165
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	46, 199
MnlI	CCTC	8 cut(s)	98, 242, 289, 292, 329, 331, 356, 421
MspI	CCGG	2 cut(s)	157, 499
MspR9I	CCNGG	3 cut(s)	132, 194, 227
MvaI	CCWGG	3 cut(s)	132, 194, 227
MvnI	CGCG	3 cut(s)	123, 187, 294
MwoI	GCNNNNNNNGC	2 cut(s)	203, 244
NarI	GGCGCC	1 cut(s)	333
NdeII	GATC	3 cut(s)	72, 435, 473
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	5 cut(s)	20, 50, 136, 313, 334
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	122, 191, 296
PleI	GAGTC	1 cut(s)	257
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	3 cut(s)	130, 192, 225
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	3 cut(s)	130, 192, 225
PspN4I	GGNNCC	5 cut(s)	20, 50, 136, 313, 334
PspPI	GGNCC	7 cut(s)	19, 118, 128, 134, 172, 229, 453
PspPPI	RGGWCCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	2 cut(s)	216, 398
RsaNI	GTAC	2 cut(s)	215, 397
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	254
SatI	GCNGC	3 cut(s)	121, 190, 295
Sau3AI	GATC	3 cut(s)	72, 435, 473
Sau96I	GGNCC	7 cut(s)	19, 118, 128, 134, 172, 229, 453
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	132, 194, 227
SduI	GDGCHC	2 cut(s)	144, 372
SetI	ASST	8 cut(s)	58, 97, 228, 249, 273, 317, 345, 372
SexAI	ACCWGGT	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	334
SgrAI	CRCCGGYG	1 cut(s)	498
SinI	GGWCC	5 cut(s)	19, 134, 172, 229, 453
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	6 cut(s)	14, 116, 121, 190, 294, 496
SspDI	GGCGCC	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	3 cut(s)	130, 192, 225
TaaI	ACNGT	2 cut(s)	325, 453
TaiI	ACGT	2 cut(s)	273, 345
TaqI	TCGA	3 cut(s)	71, 163, 366
TasI	AATT	1 cut(s)	165
TatI	WGTACW	2 cut(s)	214, 396
TauI	GCSGC	3 cut(s)	123, 192, 297
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	5 cut(s)	19, 134, 172, 229, 453
XapI	RAATTY	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.