Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017162.1

Orthogroup ID

OG0010187

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1955

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017162.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggcgaagcaaatacggaaggcgttgctgctgcttctgttgtgcgctctgtgccacgctctcacggccattgcagggaagagctattacgagatactgcaggtgcccaagggagcctccgacgagcagatcaagagggcctacagaaagctcgccttgaagtaccatcccgataagaaccagggcaatgaggaggccaatcaacgattcgcagacattaacaatgcctacgaggtgctttccgacagcgagaagaggagcatttacgataggtatggagaagacggcctcaaacagcacgccgccagtggaggaagaggtggtggaggcatgggaatgaacatcaatgacatcttcgccgatttctttggtggtggacgctctgctgaagaggaagataaaatcgtcaagggtgatgatgtagtcatcgaattggatgcatcattggaagacctctatatgggaggttcattgcaggtttggagggagaagaacgttataaagcaagcaccaggaaagagacgttgtaactgtagaaacgaagtctatcacaggcaaatcggtccgggaatgttccaacagatgacagaacaggtctgcgaacaatgtaacaatgttaaatatgaaagggagggatatttcatcactgttgatattgagaaagggatgcaagatggacaagaggtggttttctatgaggatggtgaacccataattgatggagaacctggagattta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0031347 GO:0031349 GO:0031974 GO:0032991 GO:0034663 GO:0035821 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044003 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070013 GO:0071944 GO:0075136 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

246

Amino Acids

27.6

Weight (kDa)

5.04

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62600
fragaria_vesca	FvH4_5g39520 FvH4_5g39520
malus_domestica	MD03G1297000.v1.1 MD11G1316600.v1.1
prunus_persica	Prupe.8G270200_v2.0.a1
pyrus_communis	pycom03g23550 pycom11g27630
rosa_chinensis	RchiOBHm_Chr7g0241831
rosa_laevigata	RLG00000000540
rosa_multiflora	Rmu_co8135076.1_g000001 Rmu_sc0001865.1_g000009 Rmu_sc0017162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218630
rosa_rugosa	Rorug07G0347600 Rorug07G0347700 Rorug07G0347800
rosa_samantha	Rh7AG501900 Rh7BG473300 Rh7CG518400
rosa_wichuraiana	Rw7G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	2 cut(s)	91, 466
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	1 cut(s)	303
AclI	AACGTT	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	75, 460
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	180, 511, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	2 cut(s)	84, 151
AluI	AGCT	2 cut(s)	84, 151
Alw26I	GTCTC	1 cut(s)	514
AoxI	GGCC	4 cut(s)	66, 138, 195, 286
ApeKI	GCWGC	2 cut(s)	28, 31
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	138, 563
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	425, 716
AvaII	GGWCC	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
BbsI	GAAGAC	2 cut(s)	288, 456
BbvI	GCAGC	2 cut(s)	15, 18
BccI	CCATC	4 cut(s)	174, 668, 695, 713
BceAI	ACGGC	2 cut(s)	81, 301
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	3 cut(s)	182, 513, 729
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	514
BfmI	CTRYAG	3 cut(s)	98, 142, 532
BfuAI	ACCTGC	2 cut(s)	91, 466
BisI	GCNGC	3 cut(s)	29, 32, 303
BlsI	GCNGC	3 cut(s)	30, 33, 304
Bme1390I	CCNGG	4 cut(s)	182, 513, 567, 729
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	138, 563
BmiI	GGNNCC	2 cut(s)	105, 115
BmrFI	CCNGG	4 cut(s)	182, 513, 567, 729
BmsI	GCATC	3 cut(s)	427, 449, 657
BpiI	GAAGAC	2 cut(s)	288, 456
BpuMI	CCSGG	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	108, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 460
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	3 cut(s)	69, 193, 470
BseBI	CCWGG	3 cut(s)	182, 513, 729
BseDI	CCNNGG	2 cut(s)	108, 181
BseGI	GGATG	4 cut(s)	166, 442, 672, 706
BseLI	CCNNNNNNNGG	2 cut(s)	75, 460
BseMI	GCAATG	3 cut(s)	69, 193, 470
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	206, 271
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	15, 18
BshFI	GGCC	4 cut(s)	68, 140, 197, 288
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	75, 460
BsmAI	GTCTC	1 cut(s)	514
BsmBI	CGTCTC	1 cut(s)	514
BsnI	GGCC	4 cut(s)	68, 140, 197, 288
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	4 cut(s)	68, 140, 197, 288
BspLI	GGNNCC	2 cut(s)	105, 115
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	2 cut(s)	91, 466
BspQI	GCTCTTC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	3 cut(s)	69, 193, 470
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	108, 181
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	182, 513, 729
Bst4CI	ACNGT	2 cut(s)	533, 649
Bst6I	CTCTTC	4 cut(s)	74, 248, 310, 384
BstC8I	GCNNGC	3 cut(s)	153, 300, 507
BstF5I	GGATG	4 cut(s)	166, 442, 672, 706
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 65
BstNI	CCWGG	3 cut(s)	182, 513, 729
BstSCI	CCNGG	4 cut(s)	180, 511, 565, 727
BstSFI	CTRYAG	3 cut(s)	98, 142, 532
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	15, 18
BstV2I	GAAGAC	2 cut(s)	288, 456
BsuRI	GGCC	4 cut(s)	68, 140, 197, 288
BtsCI	GGATG	4 cut(s)	166, 442, 672, 706
BtsIMutI	CAGTG	2 cut(s)	313, 645
BveI	ACCTGC	2 cut(s)	91, 466
Cac8I	GCNNGC	3 cut(s)	153, 300, 507
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	138, 563
CpoI	CGGWCCG	1 cut(s)	563
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	163
CspI	CGGWCCG	1 cut(s)	563
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	7 cut(s)	68, 84, 116, 140, 151, 197, 288
CviKI_1	RGCY	7 cut(s)	68, 84, 116, 140, 151, 197, 288
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	4 cut(s)	74, 248, 310, 384
EarI	CTCTTC	4 cut(s)	74, 248, 310, 384
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	180, 511, 727
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	276, 332, 459, 461, 500, 624, 696, 713
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	29, 32, 303
FokI	GGATG	4 cut(s)	153, 449, 679, 713
Fsp4HI	GCNGC	3 cut(s)	29, 32, 303
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	29, 32, 303
HaeIII	GGCC	4 cut(s)	68, 140, 197, 288
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	2 cut(s)	425, 716
Hpy166II	GTNNAC	2 cut(s)	377, 707
Hpy188I	TCNGA	2 cut(s)	121, 244
Hpy188III	TCNNGA	2 cut(s)	133, 170
Hpy8I	GTNNAC	2 cut(s)	377, 707
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	2 cut(s)	533, 649
HpyCH4IV	ACGT	2 cut(s)	495, 523
HpyCH4V	TGCA	5 cut(s)	74, 100, 440, 475, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 65
HpySE526I	ACGT	2 cut(s)	495, 523
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	113, 258
Lsp1109I	GCAGC	2 cut(s)	15, 18
LweI	GCATC	3 cut(s)	427, 449, 657
MaeII	ACGT	2 cut(s)	495, 523
MaeIII	GTNAC	2 cut(s)	527, 608
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	9 cut(s)	91, 265, 293, 327, 346, 401, 407, 461, 502
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	431, 714
MmeI	TCCRAC	3 cut(s)	144, 267, 601
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	2 cut(s)	219, 618
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	4 cut(s)	182, 513, 567, 729
MvaI	CCWGG	3 cut(s)	182, 513, 729
MwoI	GCNNNNNNNGC	2 cut(s)	51, 65
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	2 cut(s)	105, 115
NsiI	ATGCAT	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	30, 33, 304
PsiI	TTATAA	1 cut(s)	500
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	180, 511, 727
PspGI	CCWGG	3 cut(s)	180, 511, 727
PspN4I	GGNNCC	2 cut(s)	105, 115
PspPI	GGNCC	2 cut(s)	138, 563
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	335
Rsr2I	CGGWCCG	1 cut(s)	563
RsrII	CGGWCCG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	219, 618
SatI	GCNGC	3 cut(s)	29, 32, 303
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	138, 563
ScrFI	CCNGG	4 cut(s)	182, 513, 567, 729
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	3 cut(s)	427, 449, 657
SfcI	CTRYAG	3 cut(s)	98, 142, 532
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	431, 714
SsiI	CCGC	1 cut(s)	303
StyD4I	CCNGG	4 cut(s)	180, 511, 565, 727
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	533, 649
TaiI	ACGT	2 cut(s)	498, 526
TaqI	TCGA	1 cut(s)	429
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	2 cut(s)	431, 714
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	219, 618
Tru9I	TTAA	2 cut(s)	219, 618
TscAI	CASTG	2 cut(s)	313, 652
TseI	GCWGC	2 cut(s)	28, 31
TspDTI	ATGAA	4 cut(s)	353, 459, 631, 639
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	313, 652
VpaK11BI	GGWCC	1 cut(s)	563
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.