AT4G01040

Chitinase domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012160
Physical Location & Seq
Forward (+)
453347 .. 455611
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01040.1

Sequence Viewer

Length: 1293 bp
ATGGCGAGGAGGCGACGTTCATCGGCGGCGGAGAGTTTGAAACGGCGGAACGACGGATACGAGTCACTGTGTCAAGTCGTACAACAAGATTCAGATCGGAGACTCATCACCATTTTCGTAATCTTCTTCATTGTGATTCCCGCCGTTTCGATTGCTGTGTACAAAGTCAAATTCGCTGATCGAGTCATCCAAACGGAATCATCAATACGTCAAAAGGGAATCGTTAAAACTGATATTAATTTCCAAGAAATCCTCACTGAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATGATTATCCAGTGTTAGCTTACATTACTCCATGGAACTCTAAAGGCTATGATATGGCAAAGATATTCAACTCAAAGTTTACACATTTATCGCCGGTATGGTACGACCTGAAGAGCCAAGGGTCTGGATTGGTTTTGGAAGGGAGACATAATGCTGATAAGGGATGGATTCAAGAGCTTCGGTCAAGAGGCAATGCACTGATATTACCAAGAGTTGTTCTAGAAGCAATTCCTGGGGAGATGCTTAACAAAAAAAAACTAAGAGAGAAAGCTATCAGTCTTATTGTCACAGAGTGCAAGGAAATGGAATACAATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGCGTTTTGCATGACCCTGATTTGCGGAAAATGGCACTGAAATTCGTAAAACAACTTGGAGACGCTCTTCACTCAACGAGCTCACCAAGAAACAACCAGCAACATATGCAGTTCATGTATGTCGTTGGTCCGCCTCGTTCAGAGAAGCTCCAAATGTACGATTTTGGGCCAGAAGATCTTCAATTCTTGAAAGATTCGGTTGATGGGTTCTCTCTTATGACCTATGATTTCTCAAATCCCCAGAACCCTGGCCCCAATGCTCCTGTCAAGTGGATAGATTTAACTCTCAAGCTCCTGCTTGGGTCATCCAACAACATAGACTCAAACATAGCCAGGAAGGTTCTTCTTGGTATCAACTTTTACGGCAACGATTTTGTAATCTCTGGAGATTCAGGAGGTGGAGGAGCAATCACCGGAAGGGATTACCTCGCATTACTCCAGAAACACAAGCCAACTTTCCGTTGGGATAAAGAGAGCGGCGAACATCTTTTCATGTATAGAGATGATAAGAACATCAAGCATGCTGTTTTCTATCCTACATTGATGTCAATCCTTCTACGGCTTGAGAATGCTCGTCTCTGGGGAATCGGCATTTCAATCTGGGAAATCGGACAAGGTTTAGATTATTTCTTTGATCTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

430

Amino Acids

49.14

Weight (kDa)

9.08

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 179 - 421 2e-12 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1125
AciI CCGC 7 cut(s) 26, 29, 46, 141, 673, 779, 1125
AcsI RAATTY 3 cut(s) 170, 280, 689
AcuI CTGAAG 2 cut(s) 258, 425
AdeI CACNNNGTG 1 cut(s) 588
AfaI GTAC 4 cut(s) 81, 161, 398, 806
AgsI TTSAA 7 cut(s) 40, 285, 364, 467, 830, 838, 1245
AjnI CCWGG 3 cut(s) 526, 895, 980
AloI GAACNNNNNNTCC 1 cut(s) 33
AluBI AGCT 7 cut(s) 314, 472, 566, 644, 729, 796, 940
AluI AGCT 7 cut(s) 314, 472, 566, 644, 729, 796, 940
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 4 cut(s) 94, 433, 702, 1229
AoxI GGCC 2 cut(s) 815, 898
ApeKI GCWGC 1 cut(s) 641
ApoI RAATTY 3 cut(s) 170, 280, 689
AseI ATTAAT 1 cut(s) 237
Asp700I GAANNNNTTC 2 cut(s) 522, 825
AspS9I GGNCC 3 cut(s) 776, 815, 899
AsuHPI GGTGA 3 cut(s) 100, 723, 1051
AvaII GGWCC 1 cut(s) 776
BaeI ACNNNNGTAYC 2 cut(s) 595, 628
BanII GRGCYC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 1 cut(s) 653
BccI CCATC 2 cut(s) 453, 845
BceAI ACGGC 4 cut(s) 59, 128, 1027, 1223
BciT130I CCWGG 3 cut(s) 528, 897, 982
BciVI GTATCC 1 cut(s) 50
BcoDI GTCTC 4 cut(s) 94, 433, 702, 1229
BfaI CTAG 2 cut(s) 288, 515
BfuI GTATCC 1 cut(s) 50
BglII AGATCT 1 cut(s) 823
BisI GCNGC 3 cut(s) 27, 642, 1126
BlsI GCNGC 3 cut(s) 28, 643, 1127
Bme1390I CCNGG 3 cut(s) 528, 897, 982
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 3 cut(s) 776, 815, 899
BmiI GGNNCC 1 cut(s) 901
BmrFI CCNGG 3 cut(s) 528, 897, 982
BmsI GCATC 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 1053, 1070
BpuEI CTTGAG 2 cut(s) 920, 1232
BsaBI GATNNNNATC 2 cut(s) 93, 1196
BsaJI CCNNGG 5 cut(s) 267, 326, 412, 527, 895
BsaWI WCCGGW 1 cut(s) 1061
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 493
Bse8I GATNNNNATC 2 cut(s) 93, 1196
BseBI CCWGG 3 cut(s) 528, 897, 982
BseDI CCNNGG 5 cut(s) 267, 326, 412, 527, 895
BseGI GGATG 3 cut(s) 186, 464, 953
BseJI GATNNNNATC 2 cut(s) 93, 1196
BseMI GCAATG 1 cut(s) 493
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 22, 1065
BseXI GCAGC 1 cut(s) 653
BshFI GGCC 2 cut(s) 817, 900
BsiHKAI GWGCWC 1 cut(s) 731
BsiSI CCGG 2 cut(s) 389, 1062
BsmAI GTCTC 4 cut(s) 94, 433, 702, 1229
BsmBI CGTCTC 2 cut(s) 702, 1229
BsmI GAATGC 1 cut(s) 1222
BsnI GGCC 2 cut(s) 817, 900
Bsp1286I GDGCHC 1 cut(s) 731
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 4 cut(s) 94, 178, 823, 1282
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 7 cut(s) 26, 29, 46, 141, 673, 779, 1125
BspANI GGCC 2 cut(s) 817, 900
BspLI GGNNCC 1 cut(s) 901
BspQI GCTCTTC 2 cut(s) 401, 720
BsrBI CCGCTC 1 cut(s) 1125
BsrDI GCAATG 1 cut(s) 493
BsrFI RCCGGY 1 cut(s) 388
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 5 cut(s) 267, 326, 412, 527, 895
BssMI GATC 4 cut(s) 94, 178, 823, 1282
BssT1I CCWWGG 3 cut(s) 267, 326, 412
Bst2UI CCWGG 3 cut(s) 528, 897, 982
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 401, 720
BstAPI GCANNNNNTGC 1 cut(s) 754
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 1170
BstDEI CTNAG 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 3 cut(s) 186, 464, 953
BstKTI GATC 4 cut(s) 97, 181, 826, 1285
BstMAI GTCTC 4 cut(s) 94, 433, 702, 1229
BstMBI GATC 4 cut(s) 94, 178, 823, 1282
BstMWI GCNNNNNNNGC 1 cut(s) 754
BstNI CCWGG 3 cut(s) 528, 897, 982
BstNSI RCATGY 1 cut(s) 1172
BstSCI CCNGG 3 cut(s) 526, 895, 980
BstV1I GCAGC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 823
BstXI CCANNNNNNTGG 2 cut(s) 419, 896
BstYI RGATCY 1 cut(s) 823
BsuI GTATCC 1 cut(s) 50
BsuRI GGCC 2 cut(s) 817, 900
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 3 cut(s) 186, 464, 953
BtsIMutI CAGTG 5 cut(s) 65, 255, 312, 491, 683
Cac8I GCNNGC 1 cut(s) 1170
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 776, 815, 899
CseI GACGC 1 cut(s) 719
Csp6I GTAC 4 cut(s) 80, 160, 397, 805
CviAII CATG 5 cut(s) 327, 659, 763, 1141, 1169
CviQI GTAC 4 cut(s) 80, 160, 397, 805
DdeI CTNAG 1 cut(s) 554
DpnI GATC 4 cut(s) 96, 180, 825, 1284
DpnII GATC 4 cut(s) 94, 178, 823, 1282
DraIII CACNNNGTG 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 401, 720
EarI CTCTTC 2 cut(s) 401, 720
EciI GGCGGA 3 cut(s) 44, 61, 768
Ecl136II GAGCTC 1 cut(s) 729
Eco130I CCWWGG 3 cut(s) 267, 326, 412
Eco24I GRGCYC 1 cut(s) 731
Eco47I GGWCC 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 729
Eco57I CTGAAG 2 cut(s) 258, 425
EcoICRI GAGCTC 1 cut(s) 729
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 3 cut(s) 526, 895, 980
EcoT14I CCWWGG 3 cut(s) 267, 326, 412
EcoT38I GRGCYC 1 cut(s) 731
ErhI CCWWGG 3 cut(s) 267, 326, 412
Esp3I CGTCTC 2 cut(s) 702, 1229
FaeI CATG 5 cut(s) 330, 662, 766, 1144, 1172
FatI CATG 5 cut(s) 326, 658, 762, 1140, 1168
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 753
Fnu4HI GCNGC 3 cut(s) 27, 642, 1126
FokI GGATG 3 cut(s) 173, 471, 940
FriOI GRGCYC 1 cut(s) 731
Fsp4HI GCNGC 3 cut(s) 27, 642, 1126
FspBI CTAG 2 cut(s) 288, 515
GluI GCNGC 3 cut(s) 27, 642, 1126
GsuI CTGGAG 2 cut(s) 1053, 1070
HaeIII GGCC 2 cut(s) 817, 900
HapII CCGG 2 cut(s) 389, 1062
HgaI GACGC 1 cut(s) 719
Hin1II CATG 5 cut(s) 330, 662, 766, 1144, 1172
HpaII CCGG 2 cut(s) 389, 1062
HphI GGTGA 3 cut(s) 100, 723, 1051
Hpy166II GTNNAC 2 cut(s) 160, 375
Hpy188I TCNGA 5 cut(s) 94, 99, 277, 790, 1259
Hpy188III TCNNGA 8 cut(s) 420, 467, 480, 515, 835, 1032, 1041, 1087
Hpy8I GTNNAC 2 cut(s) 160, 375
Hpy99I CGWCG 2 cut(s) 18, 56
HpyAV CCTTC 4 cut(s) 428, 979, 1059, 1211
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 2 cut(s) 16, 208
HpyCH4V TGCA 4 cut(s) 491, 591, 658, 757
HpyF10VI GCNNNNNNNGC 1 cut(s) 754
HpyF3I CTNAG 1 cut(s) 554
HpySE526I ACGT 2 cut(s) 16, 208
Hsp92II CATG 5 cut(s) 330, 662, 766, 1144, 1172
Kzo9I GATC 4 cut(s) 94, 178, 823, 1282
LguI GCTCTTC 2 cut(s) 401, 720
LmnI GCTCC 4 cut(s) 801, 913, 945, 1052
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 1 cut(s) 525
MaeI CTAG 2 cut(s) 288, 515
MaeII ACGT 2 cut(s) 16, 208
MaeIII GTNAC 2 cut(s) 63, 580
MalI GATC 4 cut(s) 96, 180, 825, 1284
MbiI CCGCTC 1 cut(s) 1125
MboI GATC 4 cut(s) 94, 178, 823, 1282
MboII GAAGA 7 cut(s) 115, 118, 418, 707, 818, 833, 983
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 731
MluCI AATT 6 cut(s) 170, 238, 280, 522, 689, 830
MlyI GAGTC 5 cut(s) 71, 96, 192, 632, 962
MmeI TCCRAC 1 cut(s) 981
MnlI CCTC 7 cut(s) 3, 263, 476, 792, 1037, 1043, 1085
MroXI GAANNNNTTC 2 cut(s) 522, 825
MseI TTAA 4 cut(s) 225, 237, 540, 929
MspI CCGG 2 cut(s) 389, 1062
MspR9I CCNGG 3 cut(s) 528, 897, 982
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 3 cut(s) 528, 897, 982
MwoI GCNNNNNNNGC 1 cut(s) 754
NcoI CCATGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 753
NdeII GATC 4 cut(s) 94, 178, 823, 1282
NlaIII CATG 5 cut(s) 330, 662, 766, 1144, 1172
NlaIV GGNNCC 1 cut(s) 901
NmuCI GTSAC 2 cut(s) 63, 580
NspI RCATGY 1 cut(s) 1172
PaeI GCATGC 1 cut(s) 1172
PciSI GCTCTTC 2 cut(s) 401, 720
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 1222
PdmI GAANNNNTTC 2 cut(s) 522, 825
PfeI GAWTC 8 cut(s) 89, 136, 197, 219, 463, 842, 1037, 1233
PkrI GCNGC 3 cut(s) 28, 643, 1127
PleI GAGTC 5 cut(s) 70, 96, 191, 631, 962
PpsI GAGTC 5 cut(s) 70, 96, 191, 631, 962
PshBI ATTAAT 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 731
Psp6I CCWGG 3 cut(s) 526, 895, 980
PspGI CCWGG 3 cut(s) 526, 895, 980
PspN4I GGNNCC 1 cut(s) 901
PspPI GGNCC 3 cut(s) 776, 815, 899
PsrI GAACNNNNNNTAC 2 cut(s) 41, 73
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 4 cut(s) 81, 161, 398, 806
RsaNI GTAC 4 cut(s) 80, 160, 397, 805
SacI GAGCTC 1 cut(s) 731
SapI GCTCTTC 2 cut(s) 401, 720
SaqAI TTAA 4 cut(s) 225, 237, 540, 929
SatI GCNGC 3 cut(s) 27, 642, 1126
Sau3AI GATC 4 cut(s) 94, 178, 823, 1282
Sau96I GGNCC 3 cut(s) 776, 815, 899
SchI GAGTC 5 cut(s) 71, 96, 192, 632, 962
ScrFI CCNGG 3 cut(s) 528, 897, 982
SduI GDGCHC 1 cut(s) 731
SfaNI GCATC 1 cut(s) 525
SinI GGWCC 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 935, 1211
SmoI CTYRAG 2 cut(s) 935, 1211
SphI GCATGC 1 cut(s) 1172
Sse9I AATT 6 cut(s) 170, 238, 280, 522, 689, 830
SsiI CCGC 7 cut(s) 26, 29, 46, 141, 673, 779, 1125
SspMI CTAG 2 cut(s) 288, 515
SstI GAGCTC 1 cut(s) 731
StyD4I CCNGG 3 cut(s) 526, 895, 980
StyI CCWWGG 3 cut(s) 267, 326, 412
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 2 cut(s) 19, 211
TaqI TCGA 2 cut(s) 149, 181
TaqII GACCGA 1 cut(s) 465
TasI AATT 6 cut(s) 170, 238, 280, 522, 689, 830
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 29, 1128
TfiI GAWTC 8 cut(s) 89, 136, 197, 219, 463, 842, 1037, 1233
Tru1I TTAA 4 cut(s) 225, 237, 540, 929
Tru9I TTAA 4 cut(s) 225, 237, 540, 929
TscAI CASTG 5 cut(s) 72, 262, 312, 498, 690
TseFI GTSAC 2 cut(s) 63, 580
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 2 cut(s) 63, 580
TspDTI ATGAA 4 cut(s) 9, 118, 751, 1129
TspGWI ACGGA 3 cut(s) 69, 209, 1097
TspRI CASTG 5 cut(s) 72, 262, 312, 498, 690
VpaK11BI GGWCC 1 cut(s) 776
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 3 cut(s) 170, 280, 689
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 1 cut(s) 1172
XcmI CCANNNNNNNNNTGG 1 cut(s) 1107
XmnI GAANNNNTTC 2 cut(s) 522, 825
XspI CTAG 2 cut(s) 288, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.