FvH4_7g16200

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012160
Physical Location & Seq
Reverse (-)
13927410 .. 13931278
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16200.t1

Sequence Viewer

Length: 1299 bp
ATGGCGAAGAAAAAAGACCGCCGCGTCGTCGCGCCGAGTTCCGATCGCCGCAAAGACCGAGTCGAACCGCCGCACCAACTCGCCCGCTCAACCTCATTCTCAAATCGAAACCTCGCAATCACCTTCTTCGTCGTCTTCGTCGTATCTTCAGCAGTCTCGGTACTCGTGTACCGCCGCCTCAGTTTTGCTCCGATCACCGACCGGACGGAGTCCTACGTGTTCCGGCGAGGCCTTGTTAAGCCCGACGTGAATTACCAAGAGATCCTCACTGAAAATGCACATGTCTCCGAAAATGCGACTGGCAGGCACTATAAATATCCTGTATTAGCCTACATTACTCCGTGGAATTCTAAGGGATATGACTTGGCAAAAAGGTTTAACTCCAAATTTACACATATATCTCCAGTCTGGTATGATCTGAAGAGTCAAGGGGCCAGCTTAATTCTGGAAGGCAGACATAATGCTGATATTGGGTGGATCTCAGACCTTAGAAGGGCAGGAGACGCGTGGGTATTGCCTAGAGTTGTTCTGGAAGCTTTTCCAGCAGAGCTGCTTGCAAAGAAAAAGCAGAGGAAGAAGGCTATTGATCTTATAGTAAGCGAGTGCAAGGAAATGGGTTATGATGGCATTGTGCTGGAATCTTGGTCGAGGTGGGCAGTTTACCGTGTTTTGAATGATCCAAAGATGCGGAATTTGGCATTACAGTTTATAAAAGATCTTGGAGATGCACTGCATGCTGTGACTTCAGAGAGGAACAATAAGAACAGGTTGCAGTTGGTGTATGTTATAGGCCCACCACATTCAGAGACGCTCCAAGTGAATGATTTTGGACCTAAAGATCTTCAGAGCCTGAGTGATGCTGTTGATGGATTCTCACTCATGACGTATGACTTCTCGGGGCCTCATAATCCAGGTCCCAATGCGCCTCTGAAGTGGATTGAATCTATCCTCCAGCTGCTCCTTGGTACCAATAAAAACACTGCTCTGGCCAACAAGATACTTCTTGGCATCAATTTCTACGGAAATGATTTCATCCTCTCAGAAGGTCAAGGTGGTGGCGCTATCACCGGAAGAGATTACCTCTCCTTGTTGGAGAAGCACAAGCCTGACTTTCGATGGGAAAAGAACAGCGCAGAACATTTGCTCCTCTACACTGATGATGATCATAACAATCACGCTGTGTTCTACCCATCTTTACTGTCAATTTCCATGCGGCTAGAGGAAGCTCGTAAATGGGGGTGTGGCATCTCAATATGGGAAATCGGGCAAGGTCTGGATTACTTCTACGATCTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

433

Amino Acids

49.12

Weight (kDa)

8.99

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 184 - 423 4.1e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AasI GACNNNNNNGTC 1 cut(s) 23
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 1 cut(s) 965
AccBSI CCGCTC 1 cut(s) 87
AccII CGCG 3 cut(s) 24, 32, 506
AclWI GGATC 3 cut(s) 256, 485, 671
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 3 cut(s) 346, 386, 691
AcuI CTGAAG 5 cut(s) 132, 440, 729, 827, 950
AdeI CACNNNGTG 1 cut(s) 1180
AfaI GTAC 3 cut(s) 162, 170, 967
AfiI CCNNNNNNNGG 1 cut(s) 493
AflIII ACRYGT 3 cut(s) 216, 280, 504
AgsI TTSAA 2 cut(s) 673, 941
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 910
AloI GAACNNNNNNTCC 2 cut(s) 1128, 1160
AluBI AGCT 5 cut(s) 438, 536, 550, 955, 1226
AluI AGCT 5 cut(s) 438, 536, 550, 955, 1226
Alw26I GTCTC 4 cut(s) 160, 289, 495, 800
AlwI GGATC 3 cut(s) 256, 485, 671
AlwNI CAGNNNCTG 1 cut(s) 850
Ama87I CYCGRG 1 cut(s) 895
AoxI GGCC 5 cut(s) 229, 432, 790, 899, 987
ApeKI GCWGC 2 cut(s) 550, 955
ApoI RAATTY 3 cut(s) 346, 386, 691
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
Asp700I GAANNNNTTC 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 965
AspLEI GCGC 4 cut(s) 34, 925, 1061, 1133
AspS9I GGNCC 5 cut(s) 432, 791, 830, 899, 914
AsuHPI GGTGA 3 cut(s) 112, 187, 1057
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 2 cut(s) 830, 914
BaeI ACNNNNGTAYC 4 cut(s) 152, 152, 185, 185
BalI TGGCCA 1 cut(s) 989
BanI GGYRCC 1 cut(s) 965
BauI CACGAG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 537, 942
BccI CCATC 4 cut(s) 617, 860, 1110, 1198
BciT130I CCWGG 1 cut(s) 912
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 4 cut(s) 160, 289, 495, 800
BfaI CTAG 2 cut(s) 519, 1217
BfoI RGCGCY 1 cut(s) 1062
BglII AGATCT 2 cut(s) 715, 838
BisI GCNGC 7 cut(s) 22, 49, 71, 175, 551, 956, 1214
BlsI GCNGC 7 cut(s) 23, 50, 72, 176, 552, 957, 1215
Bme1390I CCNGG 1 cut(s) 912
Bme18I GGWCC 2 cut(s) 830, 914
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 5 cut(s) 432, 791, 830, 899, 914
BmiI GGNNCC 4 cut(s) 433, 900, 916, 967
BmrFI CCNGG 1 cut(s) 912
BmsI GCATC 5 cut(s) 675, 715, 847, 1017, 1254
BpiI GAAGAC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 1065, 1097
BpmI CTGGAG 2 cut(s) 387, 935
BsaAI YACGTR 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 1161
BsaJI CCNNGG 2 cut(s) 341, 961
BsaWI WCCGGW 2 cut(s) 201, 1067
BsaXI ACNNNNNCTCC 2 cut(s) 1128, 1158
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse1I ACTGG 2 cut(s) 304, 404
Bse8I GATNNNNATC 1 cut(s) 1161
BseBI CCWGG 1 cut(s) 912
BseDI CCNNGG 2 cut(s) 341, 961
BseGI GGATG 1 cut(s) 1032
BseJI GATNNNNATC 1 cut(s) 1161
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 4 cut(s) 193, 495, 842, 1053
BseNI ACTGG 2 cut(s) 304, 404
BseRI GAGGAG 1 cut(s) 1136
BseXI GCAGC 2 cut(s) 537, 942
Bsh1236I CGCG 3 cut(s) 24, 32, 506
Bsh1285I CGRYCG 2 cut(s) 46, 202
BshFI GGCC 5 cut(s) 231, 434, 792, 901, 989
BshNI GGYRCC 1 cut(s) 965
BsiEI CGRYCG 2 cut(s) 46, 202
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 3 cut(s) 202, 223, 1068
BslFI GGGAC 1 cut(s) 900
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 4 cut(s) 160, 289, 495, 800
BsmBI CGTCTC 2 cut(s) 495, 800
BsmFI GGGAC 1 cut(s) 900
BsnI GGCC 5 cut(s) 231, 434, 792, 901, 989
BsoBI CYCGRG 1 cut(s) 895
BspANI GGCC 5 cut(s) 231, 434, 792, 901, 989
BspCNI CTCAG 4 cut(s) 192, 494, 843, 1052
BspFNI CGCG 3 cut(s) 24, 32, 506
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 4 cut(s) 433, 900, 916, 967
BspPI GGATC 3 cut(s) 256, 485, 671
BspT107I GGYRCC 1 cut(s) 965
BsrBI CCGCTC 1 cut(s) 87
BsrI ACTGG 2 cut(s) 304, 404
BssECI CCNNGG 2 cut(s) 341, 961
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 961
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 3 cut(s) 665, 705, 1200
Bst6I CTCTTC 2 cut(s) 416, 1066
BstAPI GCANNNNNTGC 1 cut(s) 734
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 5 cut(s) 85, 305, 436, 555, 735
BstDEI CTNAG 6 cut(s) 179, 351, 481, 488, 851, 1039
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 1 cut(s) 1032
BstFNI CGCG 3 cut(s) 24, 32, 506
BstH2I RGCGCY 1 cut(s) 1062
BstHHI GCGC 4 cut(s) 34, 925, 1061, 1133
BstMAI GTCTC 4 cut(s) 160, 289, 495, 800
BstMCI CGRYCG 2 cut(s) 46, 202
BstMWI GCNNNNNNNGC 3 cut(s) 503, 542, 734
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 2 cut(s) 284, 737
BstSCI CCNGG 1 cut(s) 910
BstUI CGCG 3 cut(s) 24, 32, 506
BstV1I GCAGC 2 cut(s) 537, 942
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 4 cut(s) 261, 477, 715, 838
BstYI RGATCY 4 cut(s) 261, 477, 715, 838
BsuRI GGCC 5 cut(s) 231, 434, 792, 901, 989
BtgI CCRYGG 1 cut(s) 341
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 1032
BtsI GCAGTG 2 cut(s) 728, 978
BtsIMutI CAGTG 4 cut(s) 267, 728, 978, 1152
Cac8I GCNNGC 5 cut(s) 85, 305, 436, 555, 735
CaiI CAGNNNCTG 1 cut(s) 850
CciI TCATGA 1 cut(s) 879
CfoI GCGC 4 cut(s) 34, 925, 1061, 1133
Cfr13I GGNCC 5 cut(s) 432, 791, 830, 899, 914
CseI GACGC 3 cut(s) 13, 512, 817
Csp6I GTAC 3 cut(s) 161, 169, 966
CviAII CATG 4 cut(s) 281, 734, 880, 1210
CviQI GTAC 3 cut(s) 161, 169, 966
DdeI CTNAG 6 cut(s) 179, 351, 481, 488, 851, 1039
DraIII CACNNNGTG 1 cut(s) 1180
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 2 cut(s) 416, 1066
EarI CTCTTC 2 cut(s) 416, 1066
Eco130I CCWWGG 1 cut(s) 961
Eco147I AGGCCT 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 830, 914
Eco57I CTGAAG 5 cut(s) 132, 440, 729, 827, 950
Eco88I CYCGRG 1 cut(s) 895
EcoO109I RGGNCCY 2 cut(s) 899, 914
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 910
EcoT14I CCWWGG 1 cut(s) 961
ErhI CCWWGG 1 cut(s) 961
Esp3I CGTCTC 2 cut(s) 495, 800
FaeI CATG 4 cut(s) 284, 737, 883, 1213
FalI AAGNNNNNCTT 2 cut(s) 1094, 1126
FaqI GGGAC 1 cut(s) 900
FatI CATG 4 cut(s) 280, 733, 879, 1209
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 7 cut(s) 22, 49, 71, 175, 551, 956, 1214
FokI GGATG 1 cut(s) 1019
Fsp4HI GCNGC 7 cut(s) 22, 49, 71, 175, 551, 956, 1214
FspBI CTAG 2 cut(s) 519, 1217
GlaI GCGC 4 cut(s) 33, 924, 1060, 1132
GluI GCNGC 7 cut(s) 22, 49, 71, 175, 551, 956, 1214
GsuI CTGGAG 2 cut(s) 387, 935
HaeII RGCGCY 1 cut(s) 1062
HaeIII GGCC 5 cut(s) 231, 434, 792, 901, 989
HapII CCGG 3 cut(s) 202, 223, 1068
HgaI GACGC 3 cut(s) 13, 512, 817
HhaI GCGC 4 cut(s) 34, 925, 1061, 1133
Hin1II CATG 4 cut(s) 284, 737, 883, 1213
Hin6I GCGC 4 cut(s) 32, 923, 1059, 1131
HinP1I GCGC 4 cut(s) 32, 923, 1059, 1131
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 6 cut(s) 60, 209, 424, 638, 870, 941
HpaII CCGG 3 cut(s) 202, 223, 1068
HphI GGTGA 3 cut(s) 112, 187, 1057
Hpy166II GTNNAC 2 cut(s) 169, 661
Hpy188III TCNNGA 4 cut(s) 446, 530, 880, 1274
Hpy8I GTNNAC 2 cut(s) 169, 661
Hpy99I CGWCG 5 cut(s) 29, 32, 134, 143, 248
HpyAV CCTTC 5 cut(s) 133, 443, 486, 571, 1037
HpyCH4III ACNGT 3 cut(s) 665, 705, 1200
HpyCH4IV ACGT 3 cut(s) 216, 246, 884
HpyCH4V TGCA 6 cut(s) 278, 557, 606, 728, 733, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 542, 734
HpyF3I CTNAG 6 cut(s) 179, 351, 481, 488, 851, 1039
HpySE526I ACGT 3 cut(s) 216, 246, 884
Hsp92II CATG 4 cut(s) 284, 737, 883, 1213
HspAI GCGC 4 cut(s) 32, 923, 1059, 1131
KpnI GGTACC 1 cut(s) 969
Ksp22I TGATCA 1 cut(s) 1162
LmnI GCTCC 4 cut(s) 193, 816, 963, 1149
Lsp1109I GCAGC 2 cut(s) 537, 942
LweI GCATC 5 cut(s) 675, 715, 847, 1017, 1254
MaeI CTAG 2 cut(s) 519, 1217
MaeII ACGT 3 cut(s) 216, 246, 884
MaeIII GTNAC 1 cut(s) 739
MbiI CCGCTC 1 cut(s) 87
MboII GAAGA 8 cut(s) 19, 118, 127, 138, 433, 586, 833, 1083
MflI RGATCY 4 cut(s) 261, 477, 715, 838
MlsI TGGCCA 1 cut(s) 989
MluCI AATT 7 cut(s) 250, 346, 386, 441, 691, 1012, 1203
MluI ACGCGT 1 cut(s) 504
MluNI TGGCCA 1 cut(s) 989
MlyI GAGTC 3 cut(s) 69, 218, 433
MmeI TCCRAC 1 cut(s) 1071
Mox20I TGGCCA 1 cut(s) 989
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 989
MseI TTAA 3 cut(s) 237, 378, 440
Msp20I TGGCCA 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 955
MspI CCGG 3 cut(s) 202, 223, 1068
MspR9I CCNGG 1 cut(s) 912
MvaI CCWGG 1 cut(s) 912
MvnI CGCG 3 cut(s) 24, 32, 506
MwoI GCNNNNNNNGC 3 cut(s) 503, 542, 734
NlaIII CATG 4 cut(s) 284, 737, 883, 1213
NlaIV GGNNCC 4 cut(s) 433, 900, 916, 967
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 2 cut(s) 284, 737
PaeI GCATGC 1 cut(s) 737
PagI TCATGA 1 cut(s) 879
PceI AGGCCT 1 cut(s) 231
PciI ACATGT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 138
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 638, 870, 941
PflFI GACNNNGTC 2 cut(s) 59, 208
PkrI GCNGC 7 cut(s) 23, 50, 72, 176, 552, 957, 1215
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 3 cut(s) 68, 217, 432
PpsI GAGTC 3 cut(s) 68, 217, 432
Ppu21I YACGTR 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 914
PscI ACATGT 1 cut(s) 280
PsiI TTATAA 1 cut(s) 710
Psp5II RGGWCCY 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 910
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 4 cut(s) 433, 900, 916, 967
PspPI GGNCC 5 cut(s) 432, 791, 830, 899, 914
PspPPI RGGWCCY 1 cut(s) 914
PstNI CAGNNNCTG 1 cut(s) 850
PsuI RGATCY 4 cut(s) 261, 477, 715, 838
PsyI GACNNNGTC 2 cut(s) 59, 208
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 955
RsaI GTAC 3 cut(s) 162, 170, 967
RsaNI GTAC 3 cut(s) 161, 169, 966
SaqAI TTAA 3 cut(s) 237, 378, 440
SatI GCNGC 7 cut(s) 22, 49, 71, 175, 551, 956, 1214
Sau96I GGNCC 5 cut(s) 432, 791, 830, 899, 914
SchI GAGTC 3 cut(s) 69, 218, 433
ScrFI CCNGG 1 cut(s) 912
SfaNI GCATC 5 cut(s) 675, 715, 847, 1017, 1254
SinI GGWCC 2 cut(s) 830, 914
SphI GCATGC 1 cut(s) 737
Sse9I AATT 7 cut(s) 250, 346, 386, 441, 691, 1012, 1203
SseBI AGGCCT 1 cut(s) 231
SspMI CTAG 2 cut(s) 519, 1217
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 910
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 3 cut(s) 665, 705, 1200
TaiI ACGT 3 cut(s) 219, 249, 887
TaqI TCGA 4 cut(s) 63, 106, 647, 1114
TaqII GACCGA 1 cut(s) 72
TasI AATT 7 cut(s) 250, 346, 386, 441, 691, 1012, 1203
TauI GCSGC 5 cut(s) 24, 51, 73, 177, 1216
TfiI GAWTC 3 cut(s) 638, 870, 941
Tru1I TTAA 3 cut(s) 237, 378, 440
Tru9I TTAA 3 cut(s) 237, 378, 440
TscAI CASTG 4 cut(s) 274, 735, 985, 1159
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 2 cut(s) 550, 955
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 1 cut(s) 1021
TspGWI ACGGA 3 cut(s) 221, 330, 1035
TspRI CASTG 4 cut(s) 274, 735, 985, 1159
Tth111I GACNNNGTC 2 cut(s) 59, 208
VpaK11BI GGWCC 2 cut(s) 830, 914
XapI RAATTY 3 cut(s) 346, 386, 691
XceI RCATGY 2 cut(s) 284, 737
XcmI CCANNNNNNNNNTGG 2 cut(s) 442, 959
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 519, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.