Rh1CG266500

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012160
Physical Location & Seq
Reverse (-)
53176041 .. 53179483
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG266500.1

Sequence Viewer

Length: 882 bp
ATGACCAGTCAAGGGACCAGCTTAATTCTGGAAGGCAGACATAATGCTGATATTGGGTGGATCTCAGACCTTAGAATAGCAGGAGACGCTTGGGTATTGCCTAGAATTGTTCTGGAAGCTTTTCCAGCAGAGCTGCTTACAAAGAAAAAGCAGAGGAGTAAGGCCATTGATCTTATAGTAAGCGAGTGCAAGGAAATGGGCTATGATGGAATTGTGCTGGAATCTTGGTCAAGGTGGGCAGCTTACCGTGTTTTGCATGATCCAAAGACGCGGAATTTGGCATTAAAGTTTATAAAAGATCTTGGAGATGCACTGCATGCTGTGACTTCAGAGAGGAACAATAAGCACCGCTTGCAGTTGGTGTATGTTATAGGCCCACCACATTCAGAGAAGCTCCAAGTGCATGATTTTGGACCTAAAGATCTTCATAGCTTGAGTGATGCTGTGGATGGATTCTCACTTATGACATATGACTTCTCAGGGCCTCATAATCCAGGTCCCAATGCACCTTTGAAGTGGATCGATTCCACCCTCCAGCTGCTTCTTGGTACCAATAAAAACAGTGCTCTGGCCAGCAAGATACTTCTCGGCATCAATTTCTATGGAAATGATTACATCCTTTCAGGAGGTCCTGGTGGTGGTGCTATCACTGGAAGAGATTACATCTCCTTGTTGGAGAAGCACAAGCCTGCATTTCGATGGGAAAAGAACAGCGCAGAACATTTGTTCTTCTACACTGATAATGATCATAACAATCATGCTGTGTTCTACCCATCGCTACTGTCAATTTCCATGCGGCTAGAGGAAGCTCGTAAATGGGGTTGTGGCATCTCGATATGGGAAATTGGGCAAGGTCTGGATTACTTTTACGATCTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

293

Amino Acids

32.89

Weight (kDa)

6.45

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 45 - 284 7.2e-18 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AccII CGCG 1 cut(s) 271
AciI CCGC 3 cut(s) 271, 349, 796
AclWI GGATC 3 cut(s) 68, 254, 527
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 12, 638
AgsI TTSAA 1 cut(s) 514
AjnI CCWGG 2 cut(s) 493, 631
AluBI AGCT 8 cut(s) 21, 119, 133, 242, 394, 432, 538, 809
AluI AGCT 8 cut(s) 21, 119, 133, 242, 394, 432, 538, 809
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 3 cut(s) 68, 254, 527
AoxI GGCC 4 cut(s) 162, 373, 482, 570
ApeKI GCWGC 3 cut(s) 133, 239, 538
ApoI RAATTY 1 cut(s) 274
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
Asp700I GAANNNNTTC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 6 cut(s) 15, 374, 413, 482, 497, 629
AvaII GGWCC 4 cut(s) 15, 413, 497, 629
BalI TGGCCA 1 cut(s) 572
BanI GGYRCC 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 3 cut(s) 120, 251, 525
BccI CCATC 4 cut(s) 200, 443, 693, 781
BciT130I CCWGG 2 cut(s) 495, 633
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 102, 800
BglII AGATCT 2 cut(s) 298, 421
BisI GCNGC 4 cut(s) 134, 240, 539, 797
BlsI GCNGC 4 cut(s) 135, 241, 540, 798
Bme1390I CCNGG 2 cut(s) 495, 633
Bme18I GGWCC 4 cut(s) 15, 413, 497, 629
BmgT120I GGNCC 6 cut(s) 15, 374, 413, 482, 497, 629
BmiI GGNNCC 3 cut(s) 16, 499, 550
BmrFI CCNGG 2 cut(s) 495, 633
BmsI GCATC 4 cut(s) 298, 430, 600, 837
BpmI CTGGAG 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 454
Bsa29I ATCGAT 1 cut(s) 522
BsaBI GATNNNNATC 1 cut(s) 744
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 638
Bse1I ACTGG 2 cut(s) 6, 655
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 2 cut(s) 495, 633
BseCI ATCGAT 1 cut(s) 522
BseGI GGATG 2 cut(s) 454, 615
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 2 cut(s) 12, 638
BseMII CTCAG 2 cut(s) 78, 492
BseNI ACTGG 2 cut(s) 6, 655
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 3 cut(s) 120, 251, 525
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 4 cut(s) 164, 375, 484, 572
BshNI GGYRCC 1 cut(s) 548
BshVI ATCGAT 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 568
BslFI GGGAC 2 cut(s) 28, 483
BslI CCNNNNNNNGG 2 cut(s) 12, 638
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 28, 483
BsnI GGCC 4 cut(s) 164, 375, 484, 572
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
BspACI CCGC 3 cut(s) 271, 349, 796
BspANI GGCC 4 cut(s) 164, 375, 484, 572
BspCNI CTCAG 2 cut(s) 77, 491
BspDI ATCGAT 1 cut(s) 522
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 3 cut(s) 16, 499, 550
BspPI GGATC 3 cut(s) 68, 254, 527
BspT107I GGYRCC 1 cut(s) 548
BsrI ACTGG 2 cut(s) 6, 655
BssMI GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
Bst2UI CCWGG 2 cut(s) 495, 633
Bst4CI ACNGT 3 cut(s) 248, 563, 783
Bst6I CTCTTC 1 cut(s) 649
BstAPI GCANNNNNTGC 2 cut(s) 317, 352
BstC8I GCNNGC 4 cut(s) 318, 353, 574, 690
BstDEI CTNAG 3 cut(s) 64, 71, 478
BstF5I GGATG 2 cut(s) 454, 615
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 8 cut(s) 63, 172, 262, 301, 424, 522, 748, 874
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
BstMWI GCNNNNNNNGC 5 cut(s) 86, 125, 317, 352, 400
BstNI CCWGG 2 cut(s) 495, 633
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 493, 631
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 120, 251, 525
BstX2I RGATCY 3 cut(s) 60, 298, 421
BstYI RGATCY 3 cut(s) 60, 298, 421
Bsu15I ATCGAT 1 cut(s) 522
BsuRI GGCC 4 cut(s) 164, 375, 484, 572
BsuTUI ATCGAT 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 759
BtsCI GGATG 2 cut(s) 454, 615
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 4 cut(s) 311, 568, 648, 735
Cac8I GCNNGC 4 cut(s) 318, 353, 574, 690
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 6 cut(s) 15, 374, 413, 482, 497, 629
ClaI ATCGAT 1 cut(s) 522
CseI GACGC 2 cut(s) 95, 277
Csp6I GTAC 1 cut(s) 549
CviAII CATG 5 cut(s) 257, 317, 404, 758, 793
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 3 cut(s) 64, 71, 478
DpnI GATC 8 cut(s) 62, 171, 261, 300, 423, 521, 747, 873
DpnII GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 649
EarI CTCTTC 1 cut(s) 649
Eco47I GGWCC 4 cut(s) 15, 413, 497, 629
Eco57I CTGAAG 1 cut(s) 312
EcoO109I RGGNCCY 3 cut(s) 482, 497, 629
EcoRII CCWGG 2 cut(s) 493, 631
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 5 cut(s) 260, 320, 407, 761, 796
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 2 cut(s) 28, 483
FatI CATG 5 cut(s) 256, 316, 403, 757, 792
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 134, 240, 539, 797
FokI GGATG 2 cut(s) 461, 602
Fsp4HI GCNGC 4 cut(s) 134, 240, 539, 797
FspBI CTAG 2 cut(s) 102, 800
GlaI GCGC 1 cut(s) 715
GluI GCNGC 4 cut(s) 134, 240, 539, 797
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 4 cut(s) 164, 375, 484, 572
HgaI GACGC 2 cut(s) 95, 277
HhaI GCGC 1 cut(s) 716
Hin1II CATG 5 cut(s) 260, 320, 407, 761, 796
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 3 cut(s) 221, 453, 524
Hpy188I TCNGA 3 cut(s) 67, 331, 388
Hpy188III TCNNGA 5 cut(s) 29, 113, 624, 832, 857
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 248, 563, 783
HpyCH4V TGCA 8 cut(s) 189, 256, 311, 316, 355, 403, 506, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 125, 317, 352, 400
HpyF3I CTNAG 3 cut(s) 64, 71, 478
Hsp92II CATG 5 cut(s) 260, 320, 407, 761, 796
HspAI GCGC 1 cut(s) 714
KpnI GGTACC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 3 cut(s) 120, 251, 525
LweI GCATC 4 cut(s) 298, 430, 600, 837
MaeI CTAG 2 cut(s) 102, 800
MaeIII GTNAC 1 cut(s) 322
MalI GATC 8 cut(s) 62, 171, 261, 300, 423, 521, 747, 873
MboI GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
MboII GAAGA 4 cut(s) 416, 666, 721, 866
MflI RGATCY 3 cut(s) 60, 298, 421
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 572
MluCI AATT 7 cut(s) 24, 105, 210, 274, 595, 786, 843
MluNI TGGCCA 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 654
MnlI CCTC 6 cut(s) 147, 327, 495, 542, 620, 796
Mox20I TGGCCA 1 cut(s) 572
MroXI GAANNNNTTC 1 cut(s) 120
MscI TGGCCA 1 cut(s) 572
MseI TTAA 2 cut(s) 23, 284
MslI CAYNNNNRTG 1 cut(s) 697
Msp20I TGGCCA 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 538
MspR9I CCNGG 2 cut(s) 495, 633
MvaI CCWGG 2 cut(s) 495, 633
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 5 cut(s) 86, 125, 317, 352, 400
NdeI CATATG 1 cut(s) 469
NdeII GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
NlaIII CATG 5 cut(s) 260, 320, 407, 761, 796
NlaIV GGNNCC 3 cut(s) 16, 499, 550
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 221, 453, 524
PkrI GCNGC 4 cut(s) 135, 241, 540, 798
PpuMI RGGWCCY 2 cut(s) 497, 629
PsiI TTATAA 1 cut(s) 293
Psp5II RGGWCCY 2 cut(s) 497, 629
Psp6I CCWGG 2 cut(s) 493, 631
PspGI CCWGG 2 cut(s) 493, 631
PspN4I GGNNCC 3 cut(s) 16, 499, 550
PspPI GGNCC 6 cut(s) 15, 374, 413, 482, 497, 629
PspPPI RGGWCCY 2 cut(s) 497, 629
PsuI RGATCY 3 cut(s) 60, 298, 421
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 697
SaqAI TTAA 2 cut(s) 23, 284
SatI GCNGC 4 cut(s) 134, 240, 539, 797
Sau3AI GATC 8 cut(s) 60, 169, 259, 298, 421, 519, 745, 871
Sau96I GGNCC 6 cut(s) 15, 374, 413, 482, 497, 629
ScrFI CCNGG 2 cut(s) 495, 633
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 4 cut(s) 298, 430, 600, 837
SinI GGWCC 4 cut(s) 15, 413, 497, 629
SmiMI CAYNNNNRTG 1 cut(s) 697
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
SphI GCATGC 1 cut(s) 320
Sse9I AATT 7 cut(s) 24, 105, 210, 274, 595, 786, 843
SsiI CCGC 3 cut(s) 271, 349, 796
SspMI CTAG 2 cut(s) 102, 800
StyD4I CCNGG 2 cut(s) 493, 631
TaaI ACNGT 3 cut(s) 248, 563, 783
TaqI TCGA 3 cut(s) 522, 697, 833
TasI AATT 7 cut(s) 24, 105, 210, 274, 595, 786, 843
TauI GCSGC 1 cut(s) 799
TfiI GAWTC 3 cut(s) 221, 453, 524
Tru1I TTAA 2 cut(s) 23, 284
Tru9I TTAA 2 cut(s) 23, 284
TscAI CASTG 4 cut(s) 318, 568, 655, 742
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 3 cut(s) 133, 239, 538
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 416
TspRI CASTG 4 cut(s) 318, 568, 655, 742
VpaK11BI GGWCC 4 cut(s) 15, 413, 497, 629
XapI RAATTY 1 cut(s) 274
XceI RCATGY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 2 cut(s) 25, 542
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 102, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.