pycom01g10710

Chitinase domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
11509634 .. 11513434
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10710.2

Sequence Viewer

Length: 1257 bp
ATGACTCCGTTAAACATTCCCCCGCCTTTCGACATAAAAATGGCCAAGAAAAGAGAGCGCCGAGTCGCCCCGAGTGCGAAACGCGGCTACGATCGAGTCGAACCGCCGGACCAGTTCTGCAGCGCAATCCGGAAGCACACAATCACCGCATTTCTCTTCTTCTGCGTCGCTGTAGCGACCGGCGTGCTCGCGTACCGCATCAAATATGCTCCGACGGCGAACCTGGCGGATTCCTACCCCGTCCACGAGCGAGGAATCGAAAATGGAAAGGTTTCCGAAAATACGAGTAGGAGGCACTTTGAATATCCTGTATTGGCCTACATTACTCCATGGAATTCCAAGGGCTATGATATGGCAAAAAGGTTCAACTCCAAGTTTACTCATTTATCTCCAATTTGGTATGACTTAAAGAGGCATAATGCTGATACGGGATGGATCTCAGAGATTAGGATGGCAGGCGATGCTAGGGTATTGCCTAGAGTCGTTCTGGAAGCATTTCCAGCAGAGCTGCTTACAAAGAAGAAGCAGAGGAGTAAAGCTATTAATCTTATAGTAAACGAGTGCAAGGAGATGGGATATGATGGTATTGTGCTGGAATCTTGGTCAAGGTGGGCAGCGTTCAGAATTTTGCATGATCCAAGCATGCGGAATATGGCATTGCAGTTTATTAAAGAGCTTGGAGATGCACTACATGGTGTGAGCTTAGAGAAGAATGATAAGCAACGGTTGCAATTAGTCTATGTTATAGGTCCACCACAATCAGAGAAGCTCCAACCGCATGATTTTGGACCAAAAGATCTTCGGAGCTTGGATGATGCTGTGGATGGGTTCTCACTTATGACGTATGATTTCTCTGGGCCCCATAATCCAGGTCCCAATGCACCTTTGAAGTGGATTCATTCCACCCTGTGGCTGCTCCTTGGTACCGATGAAGATTGTGCTCGAGCTCGCAGAATATTTCTTGGCATCAATTTCTACGGCAATGATTTCCTCCTCAAAGGAGGTCCGGGTGGTGGTGCTATCACTGGAAGGGATTACCTGTCCTTGTTGGAGAAGCACAAGCCCCAGTTGCAATGGGAAAAGAACAGTGCAGAACATTTGTTCTATTACTCCGACGATGAAAATAACTACCACGCCGTGTTCTATCCGTCACCGATGTCAATTTCCGTGCGGCTAGAGGTAGGTCGCTACTGGGGATGCGGCATCTCGATATGGGAAATTGGGCAAGGTCTGGATTTCTTTTTCGATCTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

419

Amino Acids

47.74

Weight (kDa)

8.74

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012160)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 923
AccB1I GGYRCC 1 cut(s) 923
AccB7I CCANNNNNTGG 1 cut(s) 909
AccII CGCG 2 cut(s) 84, 191
AccIII TCCGGA 1 cut(s) 129
AclWI GGATC 2 cut(s) 443, 629
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 2 cut(s) 334, 624
AdeI CACNNNGTG 2 cut(s) 909, 1138
AfaI GTAC 2 cut(s) 194, 925
AfiI CCNNNNNNNGG 2 cut(s) 909, 1013
AgsI TTSAA 3 cut(s) 302, 367, 889
AjnI CCWGG 2 cut(s) 222, 868
AluBI AGCT 7 cut(s) 508, 539, 676, 702, 769, 807, 947
AluI AGCT 7 cut(s) 508, 539, 676, 702, 769, 807, 947
Alw21I GWGCWC 3 cut(s) 189, 943, 949
AlwI GGATC 2 cut(s) 443, 629
Ama87I CYCGRG 2 cut(s) 70, 942
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 3 cut(s) 42, 315, 857
ApaI GGGCCC 1 cut(s) 861
ApeKI GCWGC 4 cut(s) 120, 508, 614, 913
ApoI RAATTY 2 cut(s) 334, 624
AseI ATTAAT 1 cut(s) 543
Asp700I GAANNNNTTC 2 cut(s) 271, 495
Asp718I GGTACC 1 cut(s) 923
AspLEI GCGC 2 cut(s) 60, 125
AspS9I GGNCC 7 cut(s) 109, 749, 788, 857, 858, 872, 1004
AsuC2I CCSGG 1 cut(s) 1008
AsuHPI GGTGA 2 cut(s) 136, 1143
AvaI CYCGRG 2 cut(s) 70, 942
AvaII GGWCC 5 cut(s) 109, 749, 788, 872, 1004
BaeGI GKGCMC 1 cut(s) 861
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 2 cut(s) 861, 949
BauI CACGAG 1 cut(s) 245
Bbv12I GWGCWC 3 cut(s) 189, 943, 949
BbvI GCAGC 4 cut(s) 132, 495, 626, 900
BccI CCATC 5 cut(s) 426, 445, 565, 575, 818
BceAI ACGGC 3 cut(s) 231, 994, 1121
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 2 cut(s) 224, 870
BcnI CCSGG 1 cut(s) 1008
BfaI CTAG 3 cut(s) 465, 477, 1175
BfmI CTRYAG 2 cut(s) 118, 171
BfoI RGCGCY 1 cut(s) 61
BglII AGATCT 1 cut(s) 796
BisI GCNGC 7 cut(s) 85, 121, 509, 615, 914, 1172, 1201
BlsI GCNGC 7 cut(s) 86, 122, 510, 616, 915, 1173, 1202
Bme1390I CCNGG 3 cut(s) 224, 870, 1008
Bme18I GGWCC 5 cut(s) 109, 749, 788, 872, 1004
BmeT110I CYCGRG 2 cut(s) 70, 942
BmgT120I GGNCC 7 cut(s) 109, 749, 788, 857, 858, 872, 1004
BmiI GGNNCC 4 cut(s) 859, 860, 874, 925
BmrFI CCNGG 3 cut(s) 224, 870, 1008
BmrI ACTGGG 2 cut(s) 1060, 1201
BmsI GCATC 7 cut(s) 207, 451, 673, 805, 975, 1187, 1212
BmuI ACTGGG 2 cut(s) 1060, 1201
BpuMI CCSGG 1 cut(s) 1008
BsaJI CCNNGG 3 cut(s) 329, 339, 919
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 909, 1013
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 4 cut(s) 112, 1030, 1066, 1196
Bse3DI GCAATG 3 cut(s) 656, 988, 1079
BseAI TCCGGA 1 cut(s) 129
BseBI CCWGG 2 cut(s) 224, 870
BseDI CCNNGG 3 cut(s) 329, 339, 919
BseGI GGATG 5 cut(s) 437, 456, 817, 829, 1202
BseLI CCNNNNNNNGG 2 cut(s) 909, 1013
BseMI GCAATG 3 cut(s) 656, 988, 1079
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 4 cut(s) 112, 1030, 1066, 1196
BseRI GAGGAG 2 cut(s) 544, 983
BseSI GKGCMC 1 cut(s) 861
BseXI GCAGC 4 cut(s) 132, 495, 626, 900
BsgI GTGCAG 1 cut(s) 1110
Bsh1236I CGCG 2 cut(s) 84, 191
Bsh1285I CGRYCG 2 cut(s) 94, 180
BshFI GGCC 3 cut(s) 44, 317, 859
BshNI GGYRCC 1 cut(s) 923
BsiEI CGRYCG 2 cut(s) 94, 180
BsiHKAI GWGCWC 3 cut(s) 189, 943, 949
BsiHKCI CYCGRG 2 cut(s) 70, 942
BsiSI CCGG 4 cut(s) 107, 130, 180, 1007
BslFI GGGAC 1 cut(s) 858
BslI CCNNNNNNNGG 2 cut(s) 909, 1013
BsmFI GGGAC 1 cut(s) 858
BsnI GGCC 3 cut(s) 44, 317, 859
BsoBI CYCGRG 2 cut(s) 70, 942
Bsp120I GGGCCC 1 cut(s) 857
Bsp1286I GDGCHC 4 cut(s) 189, 861, 943, 949
Bsp13I TCCGGA 1 cut(s) 129
Bsp143I GATC 5 cut(s) 91, 435, 634, 796, 1246
Bsp19I CCATGG 1 cut(s) 329
BspANI GGCC 3 cut(s) 44, 317, 859
BspCNI CTCAG 1 cut(s) 452
BspEI TCCGGA 1 cut(s) 129
BspFNI CGCG 2 cut(s) 84, 191
BspLI GGNNCC 4 cut(s) 859, 860, 874, 925
BspMAI CTGCAG 1 cut(s) 122
BspPI GGATC 2 cut(s) 443, 629
BspT107I GGYRCC 1 cut(s) 923
BsrDI GCAATG 3 cut(s) 656, 988, 1079
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 4 cut(s) 112, 1030, 1066, 1196
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 329, 339, 919
BssMI GATC 5 cut(s) 91, 435, 634, 796, 1246
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 3 cut(s) 329, 339, 919
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 224, 870
Bst4CI ACNGT 2 cut(s) 726, 1088
Bst6I CTCTTC 1 cut(s) 161
BstAPI GCANNNNNTGC 2 cut(s) 461, 727
BstC8I GCNNGC 5 cut(s) 185, 189, 457, 644, 949
BstDEI CTNAG 2 cut(s) 439, 703
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 5 cut(s) 437, 456, 817, 829, 1202
BstFNI CGCG 2 cut(s) 84, 191
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 2 cut(s) 60, 125
BstKTI GATC 5 cut(s) 94, 438, 637, 799, 1249
BstMBI GATC 5 cut(s) 91, 435, 634, 796, 1246
BstMCI CGRYCG 2 cut(s) 94, 180
BstMWI GCNNNNNNNGC 8 cut(s) 74, 215, 224, 461, 500, 727, 775, 1069
BstNI CCWGG 2 cut(s) 224, 870
BstNSI RCATGY 1 cut(s) 646
BstSCI CCNGG 3 cut(s) 222, 868, 1006
BstSFI CTRYAG 2 cut(s) 118, 171
BstSLI GKGCMC 1 cut(s) 861
BstUI CGCG 2 cut(s) 84, 191
BstV1I GCAGC 4 cut(s) 132, 495, 626, 900
BstX2I RGATCY 2 cut(s) 435, 796
BstYI RGATCY 2 cut(s) 435, 796
BsuRI GGCC 3 cut(s) 44, 317, 859
BtgI CCRYGG 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 5 cut(s) 437, 456, 817, 829, 1202
BtsIMutI CAGTG 2 cut(s) 1023, 1093
Cac8I GCNNGC 5 cut(s) 185, 189, 457, 644, 949
CfoI GCGC 2 cut(s) 60, 125
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 7 cut(s) 109, 749, 788, 857, 858, 872, 1004
CseI GACGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 193, 924
CviAII CATG 5 cut(s) 330, 632, 643, 692, 779
CviQI GTAC 2 cut(s) 193, 924
DdeI CTNAG 2 cut(s) 439, 703
DpnI GATC 5 cut(s) 93, 437, 636, 798, 1248
DpnII GATC 5 cut(s) 91, 435, 634, 796, 1246
DraIII CACNNNGTG 2 cut(s) 909, 1138
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 947
Eco130I CCWWGG 3 cut(s) 329, 339, 919
Eco24I GRGCYC 2 cut(s) 861, 949
Eco47I GGWCC 5 cut(s) 109, 749, 788, 872, 1004
Eco53kI GAGCTC 1 cut(s) 947
Eco88I CYCGRG 2 cut(s) 70, 942
EcoICRI GAGCTC 1 cut(s) 947
EcoO109I RGGNCCY 2 cut(s) 858, 872
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 222, 868
EcoT14I CCWWGG 3 cut(s) 329, 339, 919
EcoT38I GRGCYC 2 cut(s) 861, 949
ErhI CCWWGG 3 cut(s) 329, 339, 919
FaeI CATG 5 cut(s) 333, 635, 646, 695, 782
FaqI GGGAC 1 cut(s) 858
FatI CATG 5 cut(s) 329, 631, 642, 691, 778
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 7 cut(s) 85, 121, 509, 615, 914, 1172, 1201
FokI GGATG 5 cut(s) 444, 463, 824, 836, 1209
FriOI GRGCYC 2 cut(s) 861, 949
Fsp4HI GCNGC 7 cut(s) 85, 121, 509, 615, 914, 1172, 1201
FspBI CTAG 3 cut(s) 465, 477, 1175
GlaI GCGC 2 cut(s) 59, 124
GluI GCNGC 7 cut(s) 85, 121, 509, 615, 914, 1172, 1201
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 3 cut(s) 44, 317, 859
HapII CCGG 4 cut(s) 107, 130, 180, 1007
HgaI GACGC 1 cut(s) 154
HhaI GCGC 2 cut(s) 60, 125
Hin1II CATG 5 cut(s) 333, 635, 646, 695, 782
Hin6I GCGC 2 cut(s) 58, 123
HinP1I GCGC 2 cut(s) 58, 123
HinfI GANTC 8 cut(s) 4, 63, 96, 230, 255, 480, 596, 895
HpaII CCGG 4 cut(s) 107, 130, 180, 1007
HphI GGTGA 2 cut(s) 136, 1143
Hpy166II GTNNAC 4 cut(s) 244, 378, 556, 752
Hpy188I TCNGA 7 cut(s) 213, 277, 442, 623, 763, 804, 1114
Hpy188III TCNNGA 4 cut(s) 130, 488, 1207, 1232
Hpy8I GTNNAC 4 cut(s) 244, 378, 556, 752
Hpy99I CGWCG 3 cut(s) 170, 217, 1118
HpyAV CCTTC 1 cut(s) 1023
HpyCH4III ACNGT 2 cut(s) 726, 1088
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 9 cut(s) 120, 564, 631, 661, 686, 730, 881, 1072, 1091
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 215, 224, 461, 500, 727, 775, 1069
HpyF3I CTNAG 2 cut(s) 439, 703
HpySE526I ACGT 1 cut(s) 842
Hsp92II CATG 5 cut(s) 333, 635, 646, 695, 782
HspAI GCGC 2 cut(s) 58, 123
Kpn2I TCCGGA 1 cut(s) 129
KpnI GGTACC 1 cut(s) 927
Kzo9I GATC 5 cut(s) 91, 435, 634, 796, 1246
LmnI GCTCC 4 cut(s) 214, 774, 804, 921
Lsp1109I GCAGC 4 cut(s) 132, 495, 626, 900
LweI GCATC 7 cut(s) 207, 451, 673, 805, 975, 1187, 1212
MaeI CTAG 3 cut(s) 465, 477, 1175
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 1 cut(s) 1149
MalI GATC 5 cut(s) 93, 437, 636, 798, 1248
MboI GATC 5 cut(s) 91, 435, 634, 796, 1246
MboII GAAGA 7 cut(s) 148, 151, 532, 721, 791, 944, 1241
MflI RGATCY 2 cut(s) 435, 796
MhlI GDGCHC 4 cut(s) 189, 861, 943, 949
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 7 cut(s) 334, 393, 624, 731, 970, 1161, 1218
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 3 cut(s) 72, 105, 489
MmeI TCCRAC 4 cut(s) 236, 796, 1029, 1137
MnlI CCTC 8 cut(s) 245, 285, 405, 522, 995, 1001, 1004, 1171
Mox20I TGGCCA 1 cut(s) 44
MroI TCCGGA 1 cut(s) 129
MroXI GAANNNNTTC 2 cut(s) 271, 495
MscI TGGCCA 1 cut(s) 44
MseI TTAA 4 cut(s) 11, 407, 543, 669
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 4 cut(s) 107, 130, 180, 1007
MspR9I CCNGG 3 cut(s) 224, 870, 1008
MvaI CCWGG 2 cut(s) 224, 870
MvnI CGCG 2 cut(s) 84, 191
MwoI GCNNNNNNNGC 8 cut(s) 74, 215, 224, 461, 500, 727, 775, 1069
NciI CCSGG 1 cut(s) 1008
NcoI CCATGG 1 cut(s) 329
NdeII GATC 5 cut(s) 91, 435, 634, 796, 1246
NlaIII CATG 5 cut(s) 333, 635, 646, 695, 782
NlaIV GGNNCC 4 cut(s) 859, 860, 874, 925
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 1149
NspI RCATGY 1 cut(s) 646
PaeI GCATGC 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 942
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 271, 495
PfeI GAWTC 4 cut(s) 230, 255, 596, 895
PflMI CCANNNNNTGG 1 cut(s) 909
PkrI GCNGC 7 cut(s) 86, 122, 510, 616, 915, 1173, 1202
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 3 cut(s) 71, 104, 488
PpsI GAGTC 3 cut(s) 71, 104, 488
PpuMI RGGWCCY 1 cut(s) 872
PshBI ATTAAT 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 949
Psp5II RGGWCCY 1 cut(s) 872
Psp6I CCWGG 2 cut(s) 222, 868
PspGI CCWGG 2 cut(s) 222, 868
PspN4I GGNNCC 4 cut(s) 859, 860, 874, 925
PspOMI GGGCCC 1 cut(s) 857
PspPI GGNCC 7 cut(s) 109, 749, 788, 857, 858, 872, 1004
PspPPI RGGWCCY 1 cut(s) 872
PspXI VCTCGAGB 1 cut(s) 942
PstI CTGCAG 1 cut(s) 122
PsuI RGATCY 2 cut(s) 435, 796
PvuI CGATCG 1 cut(s) 94
RsaI GTAC 2 cut(s) 194, 925
RsaNI GTAC 2 cut(s) 193, 924
RseI CAYNNNNRTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 949
SaqAI TTAA 4 cut(s) 11, 407, 543, 669
SatI GCNGC 7 cut(s) 85, 121, 509, 615, 914, 1172, 1201
Sau3AI GATC 5 cut(s) 91, 435, 634, 796, 1246
Sau96I GGNCC 7 cut(s) 109, 749, 788, 857, 858, 872, 1004
SchI GAGTC 3 cut(s) 72, 105, 489
ScrFI CCNGG 3 cut(s) 224, 870, 1008
SduI GDGCHC 4 cut(s) 189, 861, 943, 949
SfaNI GCATC 7 cut(s) 207, 451, 673, 805, 975, 1187, 1212
SfcI CTRYAG 2 cut(s) 118, 171
Sfr274I CTCGAG 1 cut(s) 942
SinI GGWCC 5 cut(s) 109, 749, 788, 872, 1004
SlaI CTCGAG 1 cut(s) 942
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
SphI GCATGC 1 cut(s) 646
Sse9I AATT 7 cut(s) 334, 393, 624, 731, 970, 1161, 1218
SspI AATATT 1 cut(s) 957
SspMI CTAG 3 cut(s) 465, 477, 1175
SstI GAGCTC 1 cut(s) 949
StyD4I CCNGG 3 cut(s) 222, 868, 1006
StyI CCWWGG 3 cut(s) 329, 339, 919
TaaI ACNGT 2 cut(s) 726, 1088
TaiI ACGT 1 cut(s) 845
TaqI TCGA 7 cut(s) 30, 94, 99, 258, 943, 1208, 1245
TasI AATT 7 cut(s) 334, 393, 624, 731, 970, 1161, 1218
TauI GCSGC 3 cut(s) 87, 1174, 1203
TfiI GAWTC 4 cut(s) 230, 255, 596, 895
Tru1I TTAA 4 cut(s) 11, 407, 543, 669
Tru9I TTAA 4 cut(s) 11, 407, 543, 669
TscAI CASTG 2 cut(s) 1030, 1093
TseFI GTSAC 1 cut(s) 1149
TseI GCWGC 4 cut(s) 120, 508, 614, 913
Tsp45I GTSAC 1 cut(s) 1149
TspDTI ATGAA 3 cut(s) 887, 945, 1134
TspGWI ACGGA 2 cut(s) 1137, 1156
TspRI CASTG 2 cut(s) 1030, 1093
Van91I CCANNNNNTGG 1 cut(s) 909
VpaK11BI GGWCC 5 cut(s) 109, 749, 788, 872, 1004
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 2 cut(s) 334, 624
XceI RCATGY 1 cut(s) 646
XhoI CTCGAG 1 cut(s) 942
XmnI GAANNNNTTC 2 cut(s) 271, 495
XspI CTAG 3 cut(s) 465, 477, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.